BAC Information

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BAC

Clone NameB6Ng01-248C13
Chromosome15 (Build37)
Map Location 44,316,166 - 44,473,545
singlet/doubletdoublet
Overlap genePkhd1l1, Ebag9
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream gene5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248C13.bB6Ng01-248C13.g
ACCGA056306GA056307
length1,1121,098
definitionB6Ng01-248C13.b B6Ng01-248C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,316,166 - 44,317,285)(44,472,444 - 44,473,545)
sequence
gaattcatgaccaattctgctgttgtattcttaaatttagcatttttttc
ttctcactgtgtatactgcaaatatatagatcttttaatcccttaaggtt
ttattaacacatattagttatacataacagttcattgtgacatttcaaac
aagtatacaatgtaattttcaaattcactccgttatggttttcctcctgc
ctctagctaccattgcacagcttttaaatcctgactgagcttcctcccct
ctgtctctgcgaacattccacgcctgaacatttcagataagattgctggt
cgggaattccttcttcccctggtcttcactctcagaccttcctttccttt
tctttgaaagccttatcgcaaaggttagttctctgtcattgctctggact
aactatgctctcgcctagatactatgctgggttaggagaaggacatgcac
tatattttcacggtatctgcaacagcgtgtcaacgctccaaaaaatcagt
agcttttgaatgactgaatgaaaagatttcagggtagtacacacatgcat
cttttatcattcattatttgtaatagtattttgtcagcttttccaattat
aacttcaaaatacccacttgtatattttgcattgtaatactttaaaatat
tccaattttcatttctttaaggctttatagatcaagtatactctttataa
gtttctgtaaatattaatcagcctttaatgtggaattattgttcttttct
gattgagaatttaattgtgtattttaattaattccaggtcaccacaatgt
cagcttcatcttagatagtgattatggaaaggtaggccattttgtaaata
atgattttcataatgtattcaaatggataaataaagtatatgtttatttt
gttctattaatgaggagattaaagggattaatcattttttttctcaccaa
attaattcaaagagtccataactcctgtgaaccctatactttgtgcctca
caaaacaaacacacaaaatgacagcggaagaaaaacctttctttatggat
gaatgaaatgatgaacgacatttagctgtgatatgaagacattaatttat
gtccttccttat

gaattccactcaattttgagtactgaagatataatgaacacagtaactga
gaccgaagggaagacttggaggttaagagcactggctgctcttctagaag
tcctgagttcaattcgcagcacccacatgatggctataatgagatcctgt
acccttttctggcctgaaggtgtaaatgcagggaaaacattgtatacata
ataaacaaataataaatacagtaactgacaatgtggtctgtaactcaaaa
actccaaccacagttaaattcaacttagtgtgaaagcagaagctaaatgt
ttaaaagtatcaatgcaaagttattgattttgctatgaagtattgcctta
attcaaatatattatatatggcctatacactgtatatgacattttaaagc
ctcacaaaacgttaatcctaggcaataactgtgaagaaaataaaaaatct
tcaacaattccaaagccacagaaaatcagttatatttcaatggtggaaaa
aatttaatgtattttaaactgtgagatgtgctttgttttccataaaacac
aatatgcaattatttctttaaatcaaccaatatcacaaacaaaaatattt
atatcttggtttgtaatgaaatcagtaatgttatctagctaaaagaatag
gtaccctgcattatattatgtaagattaaaaacaaaacaaacccaaaaca
aaacaaaacaaaatagagaactcttcaagaatcacttaaaaaaaaaaaat
caatgaaaactgaaggctttccacatttgaaaatggcttttaaggatgga
cactgttaccatcttgacatctgtaatgaaagagaaaagctactgatcct
agttcttgtcacacaaagttgtcattgcagctgatttttcaacatttata
catgcaatatataaattacagctctgtataacattataatactggtttaa
aagaaaaataaggatatacaaaatatttgataaataaaaattattgcatt
aatgttatttttcttaaaaacccaaatatcatattctaatgtgtacgaac
aatgccagtcaaatatagaaatgtatgtcaacagtacttgaaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44316166_44317285
seq2: B6Ng01-248C13.b_46_1157

seq1  GAATTCATGACCAATTCTGCTGTTGTATTCTTAAATTTAGCATTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCAATTCTGCTGTTGTATTCTTAAATTTAGCATTTTTTTC  50

seq1  TTCTCACTGTGTATACTGCAAATATATAGATCTTTTAATCCCTTAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGTGTATACTGCAAATATATAGATCTTTTAATCCCTTAAGGTT  100

seq1  TTATTAACACATATTAGTTATACATAACAGTTCATTGTGACATTTCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACACATATTAGTTATACATAACAGTTCATTGTGACATTTCAAAC  150

seq1  AAGTATACAATGTAATTTTCAAATTCACTCCGTTATGGTTTTCCTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACAATGTAATTTTCAAATTCACTCCGTTATGGTTTTCCTCCTGC  200

seq1  CTCTAGCTACCATTGCACAGCTTTTAAATCCTGACTGAGCTTCCTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTACCATTGCACAGCTTTTAAATCCTGACTGAGCTTCCTCCCCT  250

seq1  CTGTCTCTGCGAACATTCCACGCCTGAACATTTCAGATAAGATTGCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCGAACATTCCACGCCTGAACATTTCAGATAAGATTGCTGGT  300

seq1  CGGGAATTCCTTCTTCCCCTGGTCTTCACTCTCAGACCTTCCTTTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATTCCTTCTTCCCCTGGTCTTCACTCTCAGACCTTCCTTTCCTTT  350

seq1  TCTTTGAAAGCCTTATCGCAAAGGTTAGTTCTCTGTCATTGCTCTGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAAGCCTTATCGCAAAGGTTAGTTCTCTGTCATTGCTCTGGACT  400

seq1  AACTATGCTCTCGCCTAGATACTATGCTGGGTTAGGAGAAGGACATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCTCTCGCCTAGATACTATGCTGGGTTAGGAGAAGGACATGCAC  450

seq1  TATATTTTCACGGTATCTGCAACAGCGTGTCAACGCTCCAAAAAATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCACGGTATCTGCAACAGCGTGTCAACGCTCCAAAAAATCAGT  500

seq1  AGCTTTTGAATGACTGAATGAAAAGATTTCAGGGTAGTACACACATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAATGACTGAATGAAAAGATTTCAGGGTAGTACACACATGCAT  550

seq1  CTTTTATCATTCATTATTTGTAATAGTATTTTGTCAGCTTTTCCAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCATTCATTATTTGTAATAGTATTTTGTCAGCTTTTCCAATTAT  600

seq1  AACTTCAAAATACCCACTTGTATATTTTGCATTGTAATACTTTAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAATACCCACTTGTATATTTTGCATTGTAATACTTTAAAATAT  650

seq1  TCCAATTTTCATTTCTTTAAGGCTTTATAGATCAAGTATACTCTTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTTCATTTCTTTAAGGCTTTATAGATCAAGTATACTCTTTATAA  700

seq1  GTTTCTGTAAATATTAATCAGCCTTTAATGTGGAATTATTGTTCTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTAAATATTAATCAGCCTTTAATGTGGAATTATTGTTCTTTTCT  750

seq1  GATTGAGAATTTAATTGTGTATTTTAATTAATTCCAGGTCACCACAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGAATTTAATTGTGTATTTTAATTAATTCCAGGTCACCACAATGT  800

seq1  CAGCTTCATCTTAGATAGTGATTATGG-AAGGTAGGCCATTTTGTAAATA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGCTTCATCTTAGATAGTGATTATGGAAAGGTAGGCCATTTTGTAAATA  850

seq1  ATGATTTTCATAATGTATTCAAATGGATAAATAAAGTATATGTTTATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTCATAATGTATTCAAATGGATAAATAAAGTATATGTTTATTTT  900

seq1  GTTCTATTAATGAGGAGATTAAA-GGATTAATCA--TTTTTTCTCACCAA  946
      ||||||||||||||||||||||| ||||||||||  ||||||||||||||
seq2  GTTCTATTAATGAGGAGATTAAAGGGATTAATCATTTTTTTTCTCACCAA  950

seq1  AATTAAATTCAAAGAGTCCATAACTCCTGTGAA-CCTATAACTTGTGCCT  995
      |  | |||||||||||||||||||||||||||| ||||||  ||||||||
seq2  A--TTAATTCAAAGAGTCCATAACTCCTGTGAACCCTATACTTTGTGCCT  998

seq1  CACAAAAACAAACACACAAAATGAACAAGCG--AGAAAAACCCTTTCTAT  1043
      ||| ||||||||||||||||||||   ||||  ||||||| ||||||| |
seq2  CAC-AAAACAAACACACAAAATGA--CAGCGGAAGAAAAA-CCTTTCTTT  1044

seq1  ATGGGAATTGAAATGAAATGATGAAAAGGACATTTTAGCTGTGATATGAA  1093
      ||||  ||   ||||||||||||  || |||| ||||||||||||||| |
seq2  ATGG--AT--GAATGAAATGATG--AACGACA-TTTAGCTGTGATATG-A  1086

seq1  AGACCATTATTTTATGTCTCTTCTTAT  1120
      ||| ||||| ||||||||  | |||||
seq2  AGA-CATTAATTTATGTCCTTCCTTAT  1112


seq1: chr15_44472444_44473545
seq2: B6Ng01-248C13.g_64_1161 (reverse)

seq1  TTTGTTTTCAGGTACTGTTGACATACATTTTCTATAATTTGAACTGGCAT  50
      |||||||||| |||||||||||||||| ||||||| ||||| ||||||||
seq2  TTTGTTTTCAAGTACTGTTGACATACA-TTTCTAT-ATTTG-ACTGGCAT  47

seq1  TGTTTGGTACAACATTAAGGAATATGATAATTTGGGTTTTTAAG-AAAAT  99
      || || |||| ||||||  ||||||||| ||||||||||||||| |||||
seq2  TG-TTCGTAC-ACATTA--GAATATGAT-ATTTGGGTTTTTAAGAAAAAT  92

seq1  AACATTAAATGCAATAA-TTTTATTTATCAAATATTTTGTATATCCTTA-  147
      |||||| |||||||||| ||||||||||||||||||||||||||||||| 
seq2  AACATT-AATGCAATAATTTTTATTTATCAAATATTTTGTATATCCTTAT  141

seq1  TTTTCTTTTAAA-CAGTATTATAATGTTATACAGAGCTGTAATTTATATA  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTAAACCAGTATTATAATGTTATACAGAGCTGTAATTTATATA  191

seq1  TTGCATGTATAAATGTTG-AAAATCAGCTGCAATGACAACTTTGTGTGAC  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCATGTATAAATGTTGAAAAATCAGCTGCAATGACAACTTTGTGTGAC  241

seq1  AAGAACTAGGATCAGTAGCTTTTCTCTTTCATTACAGATGTCAAGATGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAGGATCAGTAGCTTTTCTCTTTCATTACAGATGTCAAGATGGT  291

seq1  AACAGTGTCCATCCTTAAAAGCCATTTTCAAATGTGGAAAGCCTTCAGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTCCATCCTTAAAAGCCATTTTCAAATGTGGAAAGCCTTCAGTT  341

seq1  TTCATTGATTTTTTTTTTTTAAGTGATTCTTGAAGAGTTCTCTATTTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATTTTTTTTTTTTAAGTGATTCTTGAAGAGTTCTCTATTTTGT  391

seq1  TTTGTTTTGTTTTGGGTTTGTTTTGTTTTTAATCTTACATAATATAATGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGGGTTTGTTTTGTTTTTAATCTTACATAATATAATGC  441

seq1  AGGGTACCTATTCTTTTAGCTAGATAACATTACTGATTTCATTACAAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACCTATTCTTTTAGCTAGATAACATTACTGATTTCATTACAAACC  491

seq1  AAGATATAAATATTTTTGTTTGTGATATTGGTTGATTTAAAGAAATAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATAAATATTTTTGTTTGTGATATTGGTTGATTTAAAGAAATAATT  541

seq1  GCATATTGTGTTTTATGGAAAACAAAGCACATCTCACAGTTTAAAATACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTGTGTTTTATGGAAAACAAAGCACATCTCACAGTTTAAAATACA  591

seq1  TTAAATTTTTTCCACCATTGAAATATAACTGATTTTCTGTGGCTTTGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTTTCCACCATTGAAATATAACTGATTTTCTGTGGCTTTGGAA  641

seq1  TTGTTGAAGATTTTTTATTTTCTTCACAGTTATTGCCTAGGATTAACGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGATTTTTTATTTTCTTCACAGTTATTGCCTAGGATTAACGTT  691

seq1  TTGTGAGGCTTTAAAATGTCATATACAGTGTATAGGCCATATATAATATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCTTTAAAATGTCATATACAGTGTATAGGCCATATATAATATA  741

seq1  TTTGAATTAAGGCAATACTTCATAGCAAAATCAATAACTTTGCATTGATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAAGGCAATACTTCATAGCAAAATCAATAACTTTGCATTGATA  791

seq1  CTTTTAAACATTTAGCTTCTGCTTTCACACTAAGTTGAATTTAACTGTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACATTTAGCTTCTGCTTTCACACTAAGTTGAATTTAACTGTGG  841

seq1  TTGGAGTTTTTGAGTTACAGACCACATTGTCAGTTACTGTATTTATTATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTTTGAGTTACAGACCACATTGTCAGTTACTGTATTTATTATT  891

seq1  TGTTTATTATGTATACAATGTTTTCCCTGCATTTACACCTTCAGGCCAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTATGTATACAATGTTTTCCCTGCATTTACACCTTCAGGCCAGA  941

seq1  AAAGGGTACAGGATCTCATTATAGCCATCATGTGGGTGCTGCGAATTGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTACAGGATCTCATTATAGCCATCATGTGGGTGCTGCGAATTGAA  991

seq1  CTCAGGACTTCTAGAAGAGCAGCCAGTGCTCTTAACCTCCAAGTCTTCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACTTCTAGAAGAGCAGCCAGTGCTCTTAACCTCCAAGTCTTCCC  1041

seq1  TTCGGTCTCAGTTACTGTGTTCATTATATCTTCAGTACTCAAAATTGAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTCTCAGTTACTGTGTTCATTATATCTTCAGTACTCAAAATTGAGT  1091

seq1  GGAATTC  1102
      |||||||
seq2  GGAATTC  1098


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