BAC Information

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BAC

Clone NameB6Ng01-249M02
Chromosome15 (Build37)
Map Location 11,805,727 - 11,968,538
singlet/doubletdoublet
Overlap geneNpr3, LOC381002, Sub1, LOC100040027
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
Downstream geneZfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M02.bB6Ng01-249M02.g
ACCGA057491GA057492
length1,1051,068
definitionB6Ng01-249M02.b B6Ng01-249M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,805,727 - 11,806,829)(11,967,473 - 11,968,538)
sequence
gaattcattatgttgccccggttgacctggaacttgtagtgatcttcttg
ccctggtttctcaagtaccaggatcatggacatgtaccaccaaacccacc
aagaaagcttttgaaaattaaatatataacagacattttcaaattcagta
gtttggaaaataaagttagaaaaatctctcagaaaggaaaagaaaaaggc
agaagtagaactaacacttgctttgacagcatttgtactagaagatgaga
cagaaaatatcaggaccagctaaggatgactaacactcagctctaaaatt
tatggaaggagggcatgacatcaagatttttaaatacacataccaagtcc
agcacagtggctcatatctgtaatctcagcacttgggaaactaagacatt
aaacttgccacagttccacagtctgcactacatatagaattccaacctac
ccagggctacagtgcaagaccttatcccccccaaaatattttttaaaaag
gggaggggaataagcgaacacacatcaggacattaaactacaattttata
cccagctaaactgtcaacttaatgttgacattattattagtagtataata
caaaatgttgtataatatacaaagtattaaaacctttttctcattgatgc
tcttttccttcaaaacaagaattttaagaatcaaaagggagaagtgatat
ccaagaaaaggatcatgcaatacaagaaagaactaaaagacagttccaaa
ctgatgttaaaataagaaattactccaaactggagcagaaagataaggtt
aaaaacattaatgtcattacataaaaccctttattgagggactaaaataa
aatagtaagaactatgtgaaatcaaataagataacagtcattaaactcca
gagaaggtacaggagaaacaacatgtgctcataaaacaacatatgattat
gctgtaaatgtttacaaaagcataatagtaaaaaaaaatctctgaatata
attctttttagcttttcttcaagctttatttttatgaaaacatttttaac
cagaaaagaaaaatataagcagagaacgaatgtgtcaaataatttcatct
ttttc
gaattcagctccatcagcaggactcattggaccgctgtgcttggctgcca
gggctgccctgattttaactttgatgattatatatacaccctgtcctagg
cacactcgctgtctcactatccgctcccctgctgttttatttatttttgc
tgttatttttattttggagtcagggtctcactgtacagcccaggctgttc
ttgaactcagaatcctcctgcttcagtcctttaagcactggatttacaag
catgtcccaccatgcccaaccgcccctcccccctctttcccgcttccctt
ctccctcttgctttgaccctgctggctccgccccctgctggctccgcccc
tgctggctccgcccccaacctctctcttgttttgttgctttacatttcta
actgggctccttgccataaagactcccagcttccctgagaagcaggctgg
tggcacatgtctttaatcctagcgcttgagtggcagaggcaggcggattt
ccgagtttgaggccagcctggcctacagagtgagtttcaggacagtcagg
gctacacagagaaaccctgtctcgacaaacaaacaaacaacaaaaacaac
agaaagagagagagagagagagagagagagagagagagagagagagagag
agagagagagaatcaaacccagataaccacaccattggcttctgaacagc
tgctctaccagctatttttgctgttgcagagttgggctactgtcaggtat
catggctcacatctgaaagtcccagtatgtgggaagctgaggcaggagga
tagctacaagtctggggtgagcctaggctacacagtgagttttaagctag
cctgagctacgaactcagatgctgtcttacctccctgcccaaagccaggc
ggtaataagtggagaagaagctgattaagccaatagaatcgtggatttat
taagacattatggtagcaatacatgaaatgcaggaagcaggcatgtgctc
tctagaagtggagtctggatctcgaccgtccacttttagaactctatttt
aacctgagggggaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_11805727_11806829
seq2: B6Ng01-249M02.b_46_1150

seq1  GAATTCATTATGTTGCCCCGGTTGACCTGGAACTTGTAGTGATCTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTTGCCCCGGTTGACCTGGAACTTGTAGTGATCTTCTTG  50

seq1  CCCTGGTTTCTCAAGTACCAGGATCATGGACATGTACCACCAAACCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTCTCAAGTACCAGGATCATGGACATGTACCACCAAACCCACC  100

seq1  AAGAAAGCTTTTGAAAATTAAATATATAACAGACATTTTCAAATTCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCTTTTGAAAATTAAATATATAACAGACATTTTCAAATTCAGTA  150

seq1  GTTTGGAAAATAAAGTTAGAAAAATCTCTCAGAAAGGAAAAGAAAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAAATAAAGTTAGAAAAATCTCTCAGAAAGGAAAAGAAAAAGGC  200

seq1  AGAAGTAGAACTAACACTTGCTTTGACAGCATTTGTACTAGAAGATGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGAACTAACACTTGCTTTGACAGCATTTGTACTAGAAGATGAGA  250

seq1  CAGAAAATATCAGGACCAGCTAAGGATGACTAACACTCAGCTCTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATATCAGGACCAGCTAAGGATGACTAACACTCAGCTCTAAAATT  300

seq1  TATGGAAGGAGGGCATGACATCAAGATTTTTAAATACACATACCAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGAGGGCATGACATCAAGATTTTTAAATACACATACCAAGTCC  350

seq1  AGCACAGTGGCTCATATCTGTAATCTCAGCACTTGGGAAACTAAGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTGGCTCATATCTGTAATCTCAGCACTTGGGAAACTAAGACATT  400

seq1  AAACTTGCCACAGTTCCACAGTCTGCACTACATATAGAATTCCAACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGCCACAGTTCCACAGTCTGCACTACATATAGAATTCCAACCTAC  450

seq1  CCAGGGCTACAGTGCAAGACCTTATCCCCCCCAAAATATTTTTTAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACAGTGCAAGACCTTATCCCCCCCAAAATATTTTTTAAAAAG  500

seq1  GGGAGGGGAATAAGCGAACACACATCAGGACATTAAACTACAATTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAATAAGCGAACACACATCAGGACATTAAACTACAATTTTATA  550

seq1  CCCAGCTAAACTGTCAACTTAATGTTGACATTATTATTAGTAGTATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAAACTGTCAACTTAATGTTGACATTATTATTAGTAGTATAATA  600

seq1  CAAAATGTTGTATAATATACAAAGTATTAAAACCTTTTTCTCATTGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTTGTATAATATACAAAGTATTAAAACCTTTTTCTCATTGATGC  650

seq1  TCTTTTCCTTCAAAACAAGAATTTTAAGAATCAAAAGGGAGAAGTGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTCAAAACAAGAATTTTAAGAATCAAAAGGGAGAAGTGATAT  700

seq1  CCAAGAAAAGGATCATGCAATACAAGAAAGAACTAAAAGACAGTTCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAAGGATCATGCAATACAAGAAAGAACTAAAAGACAGTTCCAAA  750

seq1  CTGATGTTAAAATAAGAAATTACTCCAAACTGGAGCAGAAAGATAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTAAAATAAGAAATTACTCCAAACTGGAGCAGAAAGATAAGGTT  800

seq1  AAAAACATTAATGTCATTACATAAAACCCTTTATTGAGGGACTAAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTAATGTCATTACATAAAACCCTTTATTGAGGGACTAAAATAA  850

seq1  AATAGTAAGAACTATGTGAAATCAAATAAGATAACAGTCATTAAACTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAGAACTATGTGAAATCAAATAAGATAACAGTCATTAAACTCCA  900

seq1  GAGAAGGTACAGGAGAAACAACATGTGCTCATAAAACAACATATGATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTACAGGAGAAACAACATGTGCTCATAAAACAACATATGATTAT  950

seq1  GCTGTAAATGTTTACAAAAGCATAATAGT-AAAAAAAATCTCTGAATATA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGTAAATGTTTACAAAAGCATAATAGTAAAAAAAAATCTCTGAATATA  1000

seq1  ATTC-TTTTAGCTTTTCTTCAAGCTTTA-TTTTATGAAAACATTTTTAAC  1047
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTCTTTTTAGCTTTTCTTCAAGCTTTATTTTTATGAAAACATTTTTAAC  1050

seq1  AAGAAAAGAAAATATTAAGCAGAGAAAGGAATGTGTCAAATAATTTCATC  1097
       |||||||||||   ||||||||| || ||||||||||||||||||||||
seq2  CAGAAAAGAAAAATATAAGCAGAG-AACGAATGTGTCAAATAATTTCATC  1099

seq1  TTTTTC  1103
      ||||||
seq2  TTTTTC  1105

seq1: chr15_11967473_11968538
seq2: B6Ng01-249M02.g_67_1134 (reverse)

seq1  GATCCT-CCCCTCA-GTTAAAAT-GAGTTCATAAAGTGGGCCGTCCGAGA  47
      |||||| ||||||| |||||||| ||||||  ||||||| | || |||||
seq2  GATCCTCCCCCTCAGGTTAAAATAGAGTTCTAAAAGTGGACGGT-CGAGA  49

seq1  TCCAG-CT-CACTTCTTAAGAGCACATGCCTGCTTCTTGCATTTCATGTA  95
      ||||| || |||||||  |||||||||||||||||| |||||||||||||
seq2  TCCAGACTCCACTTCTAGAGAGCACATGCCTGCTTCCTGCATTTCATGTA  99

seq1  -TGCTACCATTAATTGTCTTAATAAAATTCCACGTTTCTATTGGCTTAAT  144
       |||||||||  | ||||||||||||  |||||| |||||||||||||||
seq2  TTGCTACCAT--AATGTCTTAATAAA--TCCACGATTCTATTGGCTTAAT  145

seq1  CAGCTTCTTCTCCACTTAATACCGCCTGGCTTTTGGCAGGGAGGTAAGAC  194
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CAGCTTCTTCTCCACTTATTACCGCCTGGCTTTGGGCAGGGAGGTAAGAC  195

seq1  AGCATCTGAGTCTGTAGCTCAGGCTAGCTTAAAACTCACTGTGTAGCCTA  244
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGAGTTCGTAGCTCAGGCTAGCTTAAAACTCACTGTGTAGCCTA  245

seq1  GGCTCACCCCAGACTTGTAGCTATCCTCCTGCCTCAGCTTCCCACATACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACCCCAGACTTGTAGCTATCCTCCTGCCTCAGCTTCCCACATACT  295

seq1  GGGAC-TTCAGATGTGAGCCATGATACCTGACAGTAGCCCAACTCTGCAA  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTCAGATGTGAGCCATGATACCTGACAGTAGCCCAACTCTGCAA  345

seq1  CAGCAAAAATAGCTGGTAGAGCAGCTGTTCAGAAGCCAATGGTGTGGTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAATAGCTGGTAGAGCAGCTGTTCAGAAGCCAATGGTGTGGTTA  395

seq1  TCTGGGTTTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  445

seq1  TCTCTCTCTCTCTCTCTCTTTCTGTTGTTTTTGTTGTTTGTTTGTTTGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTTTCTGTTGTTTTTGTTGTTTGTTTGTTTGTC  495

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGAAACTCACTCTGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGAAACTCACTCTGTA  545

seq1  GGCCAGGCTGGCCTCAAACTCGGAAATCCGCCTGCCTCTGCCACTCAAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTGGCCTCAAACTCGGAAATCCGCCTGCCTCTGCCACTCAAGC  595

seq1  GCTAGGATTAAAGACATGTGCCACCAGCCTGCTTCTCAGGGAAGCTGGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGATTAAAGACATGTGCCACCAGCCTGCTTCTCAGGGAAGCTGGGA  645

seq1  GTCTTTATGGCAAGGAGCCCAGTTAGAAATGTAAAGCAACAAAACAAGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATGGCAAGGAGCCCAGTTAGAAATGTAAAGCAACAAAACAAGAG  695

seq1  AGAGGTTGGGGGCGGAGCCAGCAGGGGCGGAGCCAGCAGGGGGCGGAGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTGGGGGCGGAGCCAGCAGGGGCGGAGCCAGCAGGGGGCGGAGCC  745

seq1  AGCAGGGTCAAAGCAAGAGGGAGAAGGGAAGCGGGAAAGAGGGGGGAGGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTCAAAGCAAGAGGGAGAAGGGAAGCGGGAAAGAGGGGGGAGGG  795

seq1  GCGGTTGGGCATGGTGGGACATGCTTGTAAATCCAGTGCTTAAAGGACTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTGGGCATGGTGGGACATGCTTGTAAATCCAGTGCTTAAAGGACTG  845

seq1  AAGCAGGAGGATTCTGAGTTCAAGAACAGCCTGGGCTGTACAGTGAGACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGGATTCTGAGTTCAAGAACAGCCTGGGCTGTACAGTGAGACC  895

seq1  CTGACTCCAAAATAAAAATAACAGCAAAAATAAATAAAACAGCAGGGGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCAAAATAAAAATAACAGCAAAAATAAATAAAACAGCAGGGGAG  945

seq1  CGGATAGTGAGACAGCGAGTGTGCCTAGGACAGGGTGTATATATAATCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAGTGAGACAGCGAGTGTGCCTAGGACAGGGTGTATATATAATCAT  995

seq1  CAAAGTTAAAATCAGGGCAGCCCTGGCAGCCAAGCACAGCGGTCCAATGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAAAATCAGGGCAGCCCTGGCAGCCAAGCACAGCGGTCCAATGA  1045

seq1  GTCCTGCTGATGGAGCTGAATTC  1066
      |||||||||||||||||||||||
seq2  GTCCTGCTGATGGAGCTGAATTC  1068