BAC Information

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BAC

Clone NameB6Ng01-249N12
Chromosome15 (Build37)
Map Location 97,065,236 - 97,221,806
singlet/doubletdoublet
Overlap geneAmigo2, BC038822, LOC100043354
Upstream geneLOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
Downstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249N12.bB6Ng01-249N12.g
ACCGA057557GA057558
length1,206897
definitionB6Ng01-249N12.b B6Ng01-249N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,220,617 - 97,221,806)(97,065,236 - 97,066,126)
sequence
gaattcaagccatcatgcttacaagtcaaatgctttccctactgagccat
ctcccatctctaactatattagactgtattcatcccccacactgtattca
cgtagtacttacttcatccaacatttggagaaaggtgttattattatata
caaagtaaaagacattatgtgattacagacttttagttgatattttaatg
tggctttgaataaatttaaccctttggtagactatgagggtttagtgtgc
tgcgtagtcatctaccatgcaggtttagtctccttgttgattcctgtgag
aaggttccagaccccagtgttaaggaatcgcttagcagctgggtgtggtg
gctgccttttggtggaggcagagacaggaagagcagtcagagtcctcctc
agctagaggcagagcttgaggcttaccacatgagcctttgtctcaaaaac
ccaaacccaacccaacccaaaggaaatcaaaggaaaaaatgaagaaatgc
cttaggaaggtagactctctctccctcctcccttaaacactcttgtataa
tgtaggtttcttgtctagactttccttatctgtatatcttcatatctgta
gccatgagaattaaatgtctttctggatacaaaataatctttttttttaa
aaattgagttaacaaatatgcattggccaataaacttgtagaagactggc
ccactaggatatcatgtgttaactcacacagacatgccaataaatacctt
cagttaactatgtagataattgctggctggtgaggaaagatgaagtccca
caatgtagatgatgtcacatgcaaaggatgcctccaggctccccctcccc
catcagcatccatagtaagggatgatttttatagtcttatctaatggcca
tctattggctccttctgatccttcagaccaagagtactttgccctctatc
agtactcctccttttctgtgggcccatttctttgtcgccaattccggtgt
tgcgccttctttcaacccaccgtctgtgtaatactgggacctcctttcct
gggtgtttccaaagccctagatctatgaagaaccttcattcattacaatc
acgtccagaatgttccatgtttcagttgctggctcttggtttgctaaagt
tcaagcttacggaatgagtgtctggcctcactctcacctgtcataacaca
tcatgg
gaattctttgacctcatcagagcatttcagcgacgagacatctactccac
agtaaagctctgcatggcttcaaagcctgggagtggtttgactgttgtta
tactctgtttgaggatgaagaaagttacatactgggctttatatatataa
tttatttattatttctatgaatacactgtagctgtcttcagacgcacacc
agaagtgggcatcagatcccattacagatggttgtgagctaccatgtggt
tgctgggaattgaactcaggaactctggaagaacagtcagtgctcttatc
cactgagccatctctccagcccccataactaggttttcaataatgtttct
tggatgggtgggtgaatgaaattgaaatagaaatgcctgttatgtgctaa
gtctttggcttaagagacagatgacaggacgaggaccgagtcaggaagat
gaggacataaaaagaagaagaaaggccgtagtgatggaaggcagactcag
atgggtgtgtgggaaagggcagtctctgcaaggctggaaaatatagtcgg
accacagaagggaaagcagcctccgtacagaaatgcagcaagagcaaagc
cctcttgtggagaggaacggtactgcagactaatggactaaggtcatggt
tctcaacctctgggtccatatcctgcacatcagatacttacagtttcata
atagttagcaaaagtacagttattaaagtagtgatgaaaacaattttatc
gttggggggatctgaagtggtatcttgagggttcttttggagagtcagtt
gttttggatggcgttttgctggggcaagcatgtgaaggattgttacgtga
atgacacgttgatgaaggaatcctttgctaacaacagaattgtattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_97220617_97221806
seq2: B6Ng01-249N12.b_50_1255 (reverse)

seq1  CCATGATG---TATGACA---GTGAGTGAGGCCAGACACCTCATTCCGGT  44
      ||||||||   |||||||   | ||||||||||||||| |||||||| ||
seq2  CCATGATGTGTTATGACAGGTGAGAGTGAGGCCAGACA-CTCATTCC-GT  48

seq1  TAGCTTGACCTCTACCAA--CAAGAGCCAGGCACTG-AACAT-GAACATC  90
       ||||||| || || |||  ||||||||||  |||| ||||| |||||| 
seq2  AAGCTTGAACTTTAGCAAACCAAGAGCCAGCAACTGAAACATGGAACATT  98

seq1  TTGACCGTGATTGTATGAAATGAA-GTTCTCAATAGAATCTAGGGCTTTG  139
       ||  ||||||||||   |||||| |||||  |||| |||||||||||||
seq2  CTGGACGTGATTGTAATGAATGAAGGTTCTTCATAG-ATCTAGGGCTTTG  147

seq1  AAACAACCCAGG-AAGGA-GTCCCAGTATTAACACAGACG--TGGTTG-A  184
       ||  ||||||| ||||| ||||||||||| |||||||||   ||||| |
seq2  GAAACACCCAGGAAAGGAGGTCCCAGTATT-ACACAGACGGTGGGTTGAA  196

seq1  AGTAAGCGCAACACCGG-ATTGGCGACAAAGAAATTGGCCCCACAG-AAA  232
      || | |||||||||||| |||||||||||||||| ||| ||||||| |||
seq2  AGAAGGCGCAACACCGGAATTGGCGACAAAGAAA-TGGGCCCACAGAAAA  245

seq1  GGA-GAGTACTGATAGAGGGC-AAGTACTCTTGGTCTG-AGGATCAGAAG  279
      ||| ||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GGAGGAGTACTGATAGAGGGCAAAGTACTCTTGGTCTGAAGGATCAGAAG  295

seq1  GAGCCAATAGATGGCCATTAGATAAGACTATAAAAATCATCCCTTACTAT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATAGATGGCCATTAGATAAGACTATAAAAATCATCCCTTACTAT  345

seq1  GGATGCTGATGGGGGAGGGGGAGCCTGGAGGCATCCTTTGCATGTGACAT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGATGGGGGAGGGGGAGCCTGGAGGCATCCTTTGCATGTGACAT  395

seq1  CATCTACATTGTGGGACTTCATCTTTCCTCACCAGCCAGCAATTATCTAC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATTGTGGGACTTCATCTTTCCTCACCAGCCAGCAATTATCTAC  445

seq1  ATAGTTAACTGAAGGTATTTATTGGCATGTCTGTGTGAGTTAACACATGA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAACTGAAGGTATTTATTGGCATGTCTGTGTGAGTTAACACATGA  495

seq1  TATCCTAGTGGGCCAGTCTTCTACAAGTTTATTGGCCAATGCATATTTGT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGTGGGCCAGTCTTCTACAAGTTTATTGGCCAATGCATATTTGT  545

seq1  TAACTCAATTTTTAAAAAAAAAGATTATTTTGTATCCAGAAAGACATTTA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAATTTTTAAAAAAAAAGATTATTTTGTATCCAGAAAGACATTTA  595

seq1  ATTCTCATGGCTACAGATATGAAGATATACAGATAAGGAAAGTCTAGACA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATGGCTACAGATATGAAGATATACAGATAAGGAAAGTCTAGACA  645

seq1  AGAAACCTACATTATACAAGAGTGTTTAAGGGAGGAGGGAGAGAGAGTCT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTACATTATACAAGAGTGTTTAAGGGAGGAGGGAGAGAGAGTCT  695

seq1  ACCTTCCTAAGGCATTTCTTCATTTTTTCCTTTGATTTCCTTTGGGTTGG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTAAGGCATTTCTTCATTTTTTCCTTTGATTTCCTTTGGGTTGG  745

seq1  GTTGGGTTTGGGTTTTTGAGACAAAGGCTCATGTGGTAAGCCTCAAGCTC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTTGGGTTTTTGAGACAAAGGCTCATGTGGTAAGCCTCAAGCTC  795

seq1  TGCCTCTAGCTGAGGAGGACTCTGACTGCTCTTCCTGTCTCTGCCTCCAC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAGCTGAGGAGGACTCTGACTGCTCTTCCTGTCTCTGCCTCCAC  845

seq1  CAAAAGGCAGCCACCACACCCAGCTGCTAAGCGATTCCTTAACACTGGGG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCAGCCACCACACCCAGCTGCTAAGCGATTCCTTAACACTGGGG  895

seq1  TCTGGAACCTTCTCACAGGAATCAACAAGGAGACTAAACCTGCATGGTAG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCTTCTCACAGGAATCAACAAGGAGACTAAACCTGCATGGTAG  945

seq1  ATGACTACGCAGCACACTAAACCCTCATAGTCTACCAAAGGGTTAAATTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTACGCAGCACACTAAACCCTCATAGTCTACCAAAGGGTTAAATTT  995

seq1  ATTCAAAGCCACATTAAAATATCAACTAAAAGTCTGTAATCACATAATGT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGCCACATTAAAATATCAACTAAAAGTCTGTAATCACATAATGT  1045

seq1  CTTTTACTTTGTATATAATAATAACACCTTTCTCCAAATGTTGGATGAAG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTTGTATATAATAATAACACCTTTCTCCAAATGTTGGATGAAG  1095

seq1  TAAGTACTACGTGAATACAGTGTGGGGGATGAATACAGTCTAATATAGTT  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTACGTGAATACAGTGTGGGGGATGAATACAGTCTAATATAGTT  1145

seq1  AGAGATGGGAGATGGCTCAGTAGGGAAAGCATTTGACTTGTAAGCATGAT  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGAGATGGCTCAGTAGGGAAAGCATTTGACTTGTAAGCATGAT  1195

seq1  GGCTTGAATTC  1190
      |||||||||||
seq2  GGCTTGAATTC  1206

seq1: chr15_97065236_97066126
seq2: B6Ng01-249N12.g_69_965

seq1  GAATTCTTTGACCTCATCAGAGCATTTCAGCGACGAGACATCTACTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACCTCATCAGAGCATTTCAGCGACGAGACATCTACTCCAC  50

seq1  AGTAAAGCTCTGCATGGCTTCAAAGCCTGGGAGTGGTTTGACTGTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCTCTGCATGGCTTCAAAGCCTGGGAGTGGTTTGACTGTTGTTA  100

seq1  TACTCTGTTTGAGGATGAAGAAAGTTACATACTGGGCTTTATATATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTTGAGGATGAAGAAAGTTACATACTGGGCTTTATATATATAA  150

seq1  TTTATTTATTATTTCTATGAATACACTGTAGCTGTCTTCAGACGCACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATTTCTATGAATACACTGTAGCTGTCTTCAGACGCACACC  200

seq1  AGAAGTGGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCATGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCATGTGGT  250

seq1  TGCTGGGAATTGAACTCAGGAACTCTGGAAGAACAGTCAGTGCTCTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAATTGAACTCAGGAACTCTGGAAGAACAGTCAGTGCTCTTATC  300

seq1  CACTGAGCCATCTCTCCAGCCCCCATAACTAGGTTTTCAATAATGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCTCCAGCCCCCATAACTAGGTTTTCAATAATGTTTCT  350

seq1  TGGATGGGTGGGTGAATGAAATTGAAATAGAAATGCCTGTTATGTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGTGGGTGAATGAAATTGAAATAGAAATGCCTGTTATGTGCTAA  400

seq1  GTCTTTGGCTTAAGAGACAGATGACAGGACGAGGACCGAGTCAGGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGCTTAAGAGACAGATGACAGGACGAGGACCGAGTCAGGAAGAT  450

seq1  GAGGACATAAAAAGAAGAAGAAAGGCCGTAGTGATGGAAGGCAGACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATAAAAAGAAGAAGAAAGGCCGTAGTGATGGAAGGCAGACTCAG  500

seq1  ATGGGTGTGTGGGAAAGGGCAGTCTCTGCAAGGCTGGAAAATATAGTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTGTGGGAAAGGGCAGTCTCTGCAAGGCTGGAAAATATAGTCGG  550

seq1  ACCACAGAAGGGAAAGCAGCCTCCGTACAGAAATGCAGCAAGAGCAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAAGGGAAAGCAGCCTCCGTACAGAAATGCAGCAAGAGCAAAGC  600

seq1  CCTCTTGTGGAGAGGAACGGTACTGCAGACTAATGGACTAAGGTCATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTGGAGAGGAACGGTACTGCAGACTAATGGACTAAGGTCATGGT  650

seq1  TCTCAACCTCTGGGTCCATATCCTGCACATCAGATACTTACAG-TTCATA  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCAACCTCTGGGTCCATATCCTGCACATCAGATACTTACAGTTTCATA  700

seq1  ATAG-TAGCAAAAGTACAGTTA-TAAAGTAGTGATGAAAACAATTTTATC  747
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGTTAGCAAAAGTACAGTTATTAAAGTAGTGATGAAAACAATTTTATC  750

seq1  GTT-GGGGGATCTGAAGTGGTATCTTGAGGGTTC-TTTGGAGAGCCAGTT  795
      ||| |||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GTTGGGGGGATCTGAAGTGGTATCTTGAGGGTTCTTTTGGAGAGTCAGTT  800

seq1  GTATTGGATGGCGTTTTGCTGGGGCAAGCACGTGAAGGAGTGTCACGTGA  845
      || ||||||||||||||||||||||||||| |||||||| ||| ||||| 
seq2  GTTTTGGATGGCGTTTTGCTGGGGCAAGCATGTGAAGGATTGTTACGTG-  849

seq1  AAGGACACG-TGACGAAGG-ATTCTTTGCTAACAACACGATTGTATTG  891
      || |||||| ||| ||||| || ||||||||||||||  |||||||||
seq2  AATGACACGTTGATGAAGGAATCCTTTGCTAACAACAGAATTGTATTG  897