BAC Information

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BAC

Clone NameB6Ng01-250A03
Chromosome15 (Build37)
Map Location 97,027,916 - 97,150,023
singlet/doubletdoublet
Overlap geneAmigo2, BC038822, LOC100043354
Upstream geneLOC100043335, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
Downstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250A03.bB6Ng01-250A03.g
ACCGA057675GA057676
length5651,170
definitionB6Ng01-250A03.b B6Ng01-250A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,027,916 - 97,028,487)(97,148,843 - 97,150,023)
sequence
taaagctgccaggtagccaaagggggggggtcatgatgtctcctggattt
cttcattcctggcaagacggtcacaccggcacctggagatgttcaacagc
agcggtgacagtctcaccggtcatagcgtatctcagatgacaccgatact
cactcgtcaaacatctgtgggagacccactgtatgccagtgctatagaaa
tgagcaagcctagagccccatctgcaaggagcagagacccagcagagcag
agtggggacccgtgttcatggacacagcggtgtaaagctttgggctacgt
gcaagttccttagtgaggagtccacgcaaaggcctgggaaacccaaacaa
cagggaccgcaaccgtctgtgtgtcccccaacacaaagggcaggtaggca
gcccaagccaggtgcatctgctctgtgatgacatccaacctgggctttgt
tctcttcccactggtcttcccggcttggaaggatttgtgatcatacctgt
ttcctggtgattgttagacggcagtcatgcaaggtggcgggaaggaggat
aaaggaggatgaaga
gaattcattggcctatagagaaccatttctcaaccattgtgtgttaggga
ttcatggaaagtcctcttatgcccagtgtcaggatcgcagtatccaaaat
taaaagacaaggtccttgttgtcagggagcttcggtgttaaaaggacgta
agttttctgtagcgcgtgctgagtacacaccgggttgcatttcagtgtgt
gtgctacctttaatccataactgctgtgcggcagatgacatcactttacg
cagaggaagctgatgctacagacgccaggtcttgtctaacatagatagca
tgatgcttcatcggaaacgcagcagaacagaaaacccatgcaggccgccc
ctttctctgcttcacaagaacgcctaaagagagctctcatcacagagaca
tttgacaagacagaagtgaacacggggtgctctgttcaacacacacacgg
ccagcgttgtgtgggaaaggttgtggaaggcttcctggagaagatggagt
ctccacagaatggaatacggataggtgctaaatggtgctaaggcacaagc
aactgtgcgtgcctgtgttcagagaaccaggagactggggcagtatggtt
ggagactgtcacccacagcgcctggcgcaaagttggaccctctcatcaaa
aagacatttaccttacccagcaatatcaagcaaatgaaaaccttcccatc
tcgtcaacacggtgcggggagagaaagggttacgttctaaaccttccatt
ccagtttgacggactagtgccatggcaacccagcagcagcctcctgtgtc
aaggctctttctttgggcacaggaataaacagtgataaaacattaccttg
gggctttatattttgccatcagttaaaatcccgttcttagctatggcgaa
gacttcaaagaaaaagcaaagtactttcttccctcagaaaggtaaagcca
gcagagggatgatgactctgcacctcgcagcagcagcaacgcgctgcatg
agctctgtgagagagagcgccacccccctcactgttccttttctttatgc
agagatgagcagaagtctccgcattacttgcttgttgacgctgcatgaat
ggtgagaacttgtttctaaacattcccacaaatattagattgataccgat
tccaccacgctcaactcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_97027916_97028487
seq2: B6Ng01-250A03.b_43_613

seq1  GAATTCTAAAGCTGCCAGGTAGCCAAAGGGGGGGGGGTCATGATGTCTCC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTAAAGCTGCCAGGTAGCCAAA-GGGGGGGGGTCATGATGTCTCC  49

seq1  TGGATTTCTTCATTCCTGGCAAGACGGTCACACCGGCACCTGGAGATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTTCATTCCTGGCAAGACGGTCACACCGGCACCTGGAGATGTT  99

seq1  CAACAGCAGCGGTGACAGTCTCACCGGTCATAGCGTATCTCAGATGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAGCGGTGACAGTCTCACCGGTCATAGCGTATCTCAGATGACAC  149

seq1  CGATACTCACTCGTCAAACATCTGTGGGAGACCCACTGTATGCCAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACTCACTCGTCAAACATCTGTGGGAGACCCACTGTATGCCAGTGCT  199

seq1  ATAGAAATGAGCAAGCCTAGAGCCCCATCTGCAAGGAGCAGAGACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGAGCAAGCCTAGAGCCCCATCTGCAAGGAGCAGAGACCCAGC  249

seq1  AGAGCAGAGTGGGGACCCGTGTTCATGGACACAGCGGTGTAAAGCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGTGGGGACCCGTGTTCATGGACACAGCGGTGTAAAGCTTTGG  299

seq1  GCTACGTGCAAGTTCCTTAGTGAGGAGTCCACGCAAAGGCCTGGGAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTGCAAGTTCCTTAGTGAGGAGTCCACGCAAAGGCCTGGGAAACC  349

seq1  CAAACAACAGGGACCGCAACCGTCTGTGTGTCCCCCAACACAAAGGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAGGGACCGCAACCGTCTGTGTGTCCCCCAACACAAAGGGCAG  399

seq1  GTAGGCAGCCCAAGCCAGGTGCATCTGCTCTGTGATGACATCCAACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGCCCAAGCCAGGTGCATCTGCTCTGTGATGACATCCAACCTGG  449

seq1  GCTTTGTTCTCTTCCCACTGGTCTTCCCGGCTTGGAAGGATTTGTGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTCTCTTCCCACTGGTCTTCCCGGCTTGGAAGGATTTGTGATCA  499

seq1  TACCTGTTTCCTGGTGATTGTTAGACGGCAGTCATGCAAGGTGGCGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTTCCTGGTGATTGTTAGACGGCAGTCATGCAAGGTGGCGGGAA  549

seq1  GGAGGATAAAGGAGGATGAAGA  572
      ||||||||||||||||||||||
seq2  GGAGGATAAAGGAGGATGAAGA  571

seq1: chr15_97148843_97150023
seq2: B6Ng01-250A03.g_67_1236 (reverse)

seq1  CCCGAGTTGAGCGTGGTTTGGAGATCGGTACTAAATCTAAATATTTGT-G  49
      ||||||||||||||||  |||| ||||||| | ||||| ||||||||| |
seq2  CCCGAGTTGAGCGTGG--TGGA-ATCGGTA-TCAATCT-AATATTTGTGG  45

seq1  GATTGTTTTAGGAAAACAAGTTCTCACCCATCACGCAGCTGTCACACAGC  99
      || || |||||  |||||||||||||||  ||| ||||| ||||   |||
seq2  GAATG-TTTAG--AAACAAGTTCTCACCATTCATGCAGC-GTCAACAAGC  91

seq1  -AGTAATTGCGAGAC-TCTGCTCATCTCTGGCATAAAGAAAGGGAACAGT  147
       ||||||   ||||| ||||||||||||| ||||||||||| ||||||||
seq2  AAGTAATGCGGAGACTTCTGCTCATCTCT-GCATAAAGAAAAGGAACAGT  140

seq1  GAGGGGGTGGCCGCTCTCTCTCCACAGAGCTCATTGCAGCGGCGTTGCTG  197
      |||||||  | |||||||||| ||||||||||| |||||| |||||||||
seq2  GAGGGGGGTGGCGCTCTCTCT-CACAGAGCTCA-TGCAGC-GCGTTGCTG  187

seq1  CTGCTGCGAGGTGCAGAGTCATCCATCCCTCTGCTGGCCTTTACCTTTCT  247
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  CTGCTGCGAGGTGCAGAGTCAT-CATCCCTCTGCTGG-CTTTACCTTTCT  235

seq1  GAGGGAAG-AAGTACTTTGCTTTTTCTTTGAAGTCTTCGCCATAGCTAAG  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGAAAGTACTTTGCTTTTTCTTTGAAGTCTTCGCCATAGCTAAG  285

seq1  AACGGGATTTTAACTGATGGCAAAATATAAAGCCCCAAGGTAATGTTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGATTTTAACTGATGGCAAAATATAAAGCCCCAAGGTAATGTTTTA  335

seq1  TCACTGTTTATTCCTGTGCCCAAAGAAAGAGCCTTGACACAGGAGGCTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTTATTCCTGTGCCCAAAGAAAGAGCCTTGACACAGGAGGCTGC  385

seq1  TGCTGGGTTGCCATGGCACTAGTCCGTCAAACTGGAATGGAAGGTTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTTGCCATGGCACTAGTCCGTCAAACTGGAATGGAAGGTTTAGA  435

seq1  ACGTAACCCTTTCTCTCCCCGCACCGTGTTGACGAGATGGGAAGGTTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACCCTTTCTCTCCCCGCACCGTGTTGACGAGATGGGAAGGTTTTC  485

seq1  ATTTGCTTGATATTGCTGGGTAAGGTAAATGTCTTTTTGATGAGAGGGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGATATTGCTGGGTAAGGTAAATGTCTTTTTGATGAGAGGGTC  535

seq1  CAACTTTGCGCCAGGCGCTGTGGGTGACAGTCTCCAACCATACTGCCCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGCGCCAGGCGCTGTGGGTGACAGTCTCCAACCATACTGCCCCA  585

seq1  GTCTCCTGGTTCTCTGAACACAGGCACGCACAGTTGCTTGTGCCTTAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGTTCTCTGAACACAGGCACGCACAGTTGCTTGTGCCTTAGCA  635

seq1  CCATTTAGCACCTATCCGTATTCCATTCTGTGGAGACTCCATCTTCTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGCACCTATCCGTATTCCATTCTGTGGAGACTCCATCTTCTCCA  685

seq1  GGAAGCCTTCCACAACCTTTCCCACACAACGCTGGCCGTGTGTGTGTTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTTCCACAACCTTTCCCACACAACGCTGGCCGTGTGTGTGTTGA  735

seq1  ACAGAGCACCCCGTGTTCACTTCTGTCTTGTCAAATGTCTCTGTGATGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCACCCCGTGTTCACTTCTGTCTTGTCAAATGTCTCTGTGATGAG  785

seq1  AGCTCTCTTTAGGCGTTCTTGTGAAGCAGAGAAAGGGGCGGCCTGCATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTTTAGGCGTTCTTGTGAAGCAGAGAAAGGGGCGGCCTGCATGG  835

seq1  GTTTTCTGTTCTGCTGCGTTTCCGATGAAGCATCATGCTATCTATGTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTCTGCTGCGTTTCCGATGAAGCATCATGCTATCTATGTTAG  885

seq1  ACAAGACCTGGCGTCTGTAGCATCAGCTTCCTCTGCGTAAAGTGATGTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCTGGCGTCTGTAGCATCAGCTTCCTCTGCGTAAAGTGATGTCA  935

seq1  TCTGCCGCACAGCAGTTATGGATTAAAGGTAGCACACACACTGAAATGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGCACAGCAGTTATGGATTAAAGGTAGCACACACACTGAAATGCA  985

seq1  ACCCGGTGTGTACTCAGCACGCGCTACAGAAAACTTACGTCCTTTTAACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGTGTGTACTCAGCACGCGCTACAGAAAACTTACGTCCTTTTAACA  1035

seq1  CCGAAGCTCCCTGACAACAAGGACCTTGTCTTTTAATTTTGGATACTGCG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGCTCCCTGACAACAAGGACCTTGTCTTTTAATTTTGGATACTGCG  1085

seq1  ATCCTGACACTGGGCATAAGAGGACTTTCCATGAATCCCTAACACACAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACACTGGGCATAAGAGGACTTTCCATGAATCCCTAACACACAAT  1135

seq1  GGTTGAGAAATGGTTCTCTATAGGCCAATGAATTC  1181
      |||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAAATGGTTCTCTATAGGCCAATGAATTC  1170