BAC Information

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BAC

Clone NameB6Ng01-250G20
Chromosome15 (Build37)
Map Location 92,866,675 - 92,987,891
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042529, Cntn1, Pdzrn4, LOC100042552
Downstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250G20.bB6Ng01-250G20.g
ACCGA057977GA057978
length1,0731,130
definitionB6Ng01-250G20.b B6Ng01-250G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,866,675 - 92,867,745)(92,986,771 - 92,987,891)
sequence
gaattctctacccaaacccatcttagggcgatggttgggtcacatcttca
agacacacctggggaacacacctctgctaaaagagaggcattcttgggag
ggtgagggggaatcttacaggcccacagaaggcaaaaatcaagtgaagcc
agagaggttcctaatacacaaagaagggaagagtgagctatgaaaagagc
tctggctgacagcagacgtttggataccccaaagtcaaagctggcataag
ccaaaggtgaggcgagagtctgaagtcaacagagcctcgcccagatatgt
aactagtttaacagcgccctgttttgaagacccagaaaccacacctcttt
ctttcctttatttccgtgtaattgattcttagaggccatcactatgagtc
tgtgatactgtggcttttaattgttaatgttgctatcttttgatttgtct
gcatattttggcctaaagtttcgtggttttccatttttttaaattctact
tcatcttaagttatgtgtgtgctcgtgtgagttttgactttatagaactc
tcttcagtaggattgctactcttggttctgtgaccactggttgtggattt
gtgggctgtaatagattttgtgtgcatttttaaattcactttatatcctt
ccagtccacccctcccccatgcccccatcccttctcctctgagagagtgg
ggcctccctgagtattccccaaccctagcacattaagtctctgtgaaact
gggtgcatcttctcccactgaggccagacaaggcagcccagctagaacat
attccacagacaggcagcaactttagggatcgccctgctccagtggtttg
gggcccacaggaagactgagctgcacatcagctgcatatgtgtggggggc
ctaggtccagtctgtggtatgatctttgattgggctgttcagtttctgag
aggccccagggggtttcagttagttaactctgttggtcttcctgtggagt
ttctatccctttggggttctcaattccttctgggtctggtttacttcact
caagatgatattcgcagttccat

gaattccacagtgctacagagtgcgaagggtggggagctggtggggagag
agtgagcctgagatttcatactgagtgtgtttgatgaggtagttagtctt
tccatgtcctgactagggaagctctggcaggagctgagaactcaatggca
caaggtcacatctttatctctatgggattcatctggagcagtcacactgg
cagtagtgaagatttttctcattttaagggagagagttttcaagaagaga
agcccctggagcctcactggatatagtcagaggtactctgggcagcgtct
gtctgggaccactcaggagagcatccaaagacctgctacattgttggatg
taggcggtttgccaagctcagtgagtgtcttctctgttgggatttctctc
tcctgagtaggagcaatagataaaagtgcacacctatcagccacagtgag
tgctatccatccaaacctcagaagcatcataaatctgctataagctgagg
ccgtggatgcggctgctttcttgagtgcatgtttaataggatgcatggat
ttgggaaactgtggaattcccacttacggaaggcagacgtagtgctctgg
gcttctcaagtgcaatggaaccctggaccgccagcatctctctaaatgtt
ctgttattagcttctgggagctgtatttcttctcccagtgtgaacgatcg
ataaggaccctgtacctcccctgcagttaagagcctaggcattgtggtta
aggaaagctagctggaagctggcttccattaactcccaatcatttgccgt
cgggcaaaggacttcatgttatatctgagcatcatttttcctctgacgtg
gtatggaaagatgatagtacttacattatcaatatgttgtggaaaaataa
acacacaccttgtgtgtatataaaccttatttataaagttgaacagttta
actacttttatctttcatatcacatttaccttgagtaagcttctttggga
aaaaaaaaatcagatatagccagcgagtgcttcgaattttggacatattc
cttgaacactatctgaagtactggtgatgtctattggatgaccatgcagc
tcagaatagtcttctcatggagcgcattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92866675_92867745
seq2: B6Ng01-250G20.b_46_1118

seq1  GAATTCTCTACCCAAACCCATCTTAGGGCGATGGTTGGGTCACATCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACCCAAACCCATCTTAGGGCGATGGTTGGGTCACATCTTCA  50

seq1  AGACACACCTGGGGAACACACCTCTGCTAAAAGAGAGGCATTCTTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCTGGGGAACACACCTCTGCTAAAAGAGAGGCATTCTTGGGAG  100

seq1  GGTGAGGGGGAATCTTACAGGCCCACAGAAGGCAAAAATCAAGTGAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGGGAATCTTACAGGCCCACAGAAGGCAAAAATCAAGTGAAGCC  150

seq1  AGAGAGGTTCCTAATACACAAAGAAGGGAAGAGTGAGCTATGAAAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTTCCTAATACACAAAGAAGGGAAGAGTGAGCTATGAAAAGAGC  200

seq1  TCTGGCTGACAGCAGACGTTTGGATACCCCAAAGTCAAAGCTGGCATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGACAGCAGACGTTTGGATACCCCAAAGTCAAAGCTGGCATAAG  250

seq1  CCAAAGGTGAGGCGAGAGTCTGAAGTCAACAGAGCCTCGCCCAGATATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTGAGGCGAGAGTCTGAAGTCAACAGAGCCTCGCCCAGATATGT  300

seq1  AACTAGTTTAACAGCGCCCTGTTTTGAAGACCCAGAAACCACACCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTTAACAGCGCCCTGTTTTGAAGACCCAGAAACCACACCTCTTT  350

seq1  CTTTCCTTTATTTCCGTGTAATTGATTCTTAGAGGCCATCACTATGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTATTTCCGTGTAATTGATTCTTAGAGGCCATCACTATGAGTC  400

seq1  TGTGATACTGTGGCTTTTAATTGTTAATGTTGCTATCTTTTGATTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATACTGTGGCTTTTAATTGTTAATGTTGCTATCTTTTGATTTGTCT  450

seq1  GCATATTTTGGCCTAAAGTTTCGTGGTTTTCCATTTTTTTAAATTCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTGGCCTAAAGTTTCGTGGTTTTCCATTTTTTTAAATTCTACT  500

seq1  TCATCTTAAGTTATGTGTGTGCTCGTGTGAGTTTTGACTTTATAGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAAGTTATGTGTGTGCTCGTGTGAGTTTTGACTTTATAGAACTC  550

seq1  TCTTCAGTAGGATTGCTACTCTTGGTTCTGTGACCACTGGTTGTGGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTAGGATTGCTACTCTTGGTTCTGTGACCACTGGTTGTGGATTT  600

seq1  GTGGGCTGTAATAGATTTTGTGTGCATTTTTAAATTCACTTTATATCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGTAATAGATTTTGTGTGCATTTTTAAATTCACTTTATATCCTT  650

seq1  CCAGTCCACCCCTCCCCCATGCCCCCATCCCTTCTCCTCTGAGAGAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCACCCCTCCCCCATGCCCCCATCCCTTCTCCTCTGAGAGAGTGG  700

seq1  GGCCTCCCTGAGTATTCCCCAACCCTAGCACATTAAGTCTCTGTGAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCTGAGTATTCCCCAACCCTAGCACATTAAGTCTCTGTGAAACT  750

seq1  GGGTGCATCTTCTCCCACTGAGGCCAGACAAGGCAGCCCAGCTAGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCATCTTCTCCCACTGAGGCCAGACAAGGCAGCCCAGCTAGAACAT  800

seq1  ATTCCACAGACAGGCAGCAACTTTAGGGATCGCCCTGCTCCAGTGGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAGACAGGCAGCAACTTTAGGGATCGCCCTGCTCCAGTGGTTTG  850

seq1  GGGCCCACAGGAAGACTGAGCTGCACATCAGCTGCATATGTGTGGGGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCACAGGAAGACTGAGCTGCACATCAGCTGCATATGTGTGGGGGGC  900

seq1  CTAGGTCCAGTCTGT-GTATGATCTTTGATT-GGCTGTTCAGTTTCTGAG  948
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CTAGGTCCAGTCTGTGGTATGATCTTTGATTGGGCTGTTCAGTTTCTGAG  950

seq1  AGGCCCCAGGGG--TTCAGGTTAGTTAACTCTGTTGGTCTTCCTGTGGAG  996
      ||||||||||||  |||| |||||||||||||||||||||||||||||||
seq2  AGGCCCCAGGGGGTTTCA-GTTAGTTAACTCTGTTGGTCTTCCTGTGGAG  999

seq1  TTCCTATCCCCTTTGGGGTCCTCAA-TCCTTCTGGGTCTGGGTTACCTCA  1045
      || |||| ||||||||||| ||||| ||||||||||||||| |||| |||
seq2  TTTCTAT-CCCTTTGGGGTTCTCAATTCCTTCTGGGTCTGGTTTACTTCA  1048

seq1  CTCAGGATGATATTCGCAAGTTCCAT  1071
      |||| |||||||||||| ||||||||
seq2  CTCAAGATGATATTCGC-AGTTCCAT  1073


seq1: chr15_92986771_92987891
seq2: B6Ng01-250G20.g_66_1195 (reverse)

seq1  GCAAAGCGCTCCAATGAGAAGGAACTATCTGGAGCTGCATGGTCCTCC-A  49
      |||| ||||||| ||||||||  |||||   ||||||||||||| ||| |
seq2  GCAATGCGCTCC-ATGAGAAG--ACTATTCTGAGCTGCATGGTCATCCAA  47

seq1  TAGACATCCACAGTAC-TCAGTAAGTGTTTCAGGAATATGTCC-AAATTC  97
      ||||||||  |||||| ||||  ||||||  |||||||||||| ||||||
seq2  TAGACATCACCAGTACTTCAGATAGTGTTCAAGGAATATGTCCAAAATTC  97

seq1  G-AGCACTCGCTGGCTATATCTGA-TTTTTTTTTCCCAAAG-AGCTTACT  144
      | |||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  GAAGCACTCGCTGGCTATATCTGATTTTTTTTTTCCCAAAGAAGCTTACT  147

seq1  CAAGGT-AATGTGATATG-AAGAATAAAGTAGTT-AACTGTTCAACTTTA  191
      |||||| ||||||||||| ||||  ||||||||| |||||||||||||||
seq2  CAAGGTAAATGTGATATGAAAGATAAAAGTAGTTAAACTGTTCAACTTTA  197

seq1  T-AATAAGGTTTATATACACACAAGGTGTGTGTTTA-TTTTCCACAACAT  239
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAATAAGGTTTATATACACACAAGGTGTGTGTTTATTTTTCCACAACAT  247

seq1  ATTGATAATGTAAGTACTATCATCTTTCCATACCACGTCAGAGG-AAAAT  288
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTGATAATGTAAGTACTATCATCTTTCCATACCACGTCAGAGGAAAAAT  297

seq1  GATGCTCAGATATAACATGAAGTCCTTTGCCCGACGGCAAATGATTGGGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAGATATAACATGAAGTCCTTTGCCCGACGGCAAATGATTGGGA  347

seq1  GTTAATGGAAGCCAGCTTCCAGCTAGCTTTCCTTAACCACAATGCCTAGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGAAGCCAGCTTCCAGCTAGCTTTCCTTAACCACAATGCCTAGG  397

seq1  CTCTTAACTGCAGGGGAGGTACAGGGTCCTTATCGATCGTTCACACTGGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTGCAGGGGAGGTACAGGGTCCTTATCGATCGTTCACACTGGG  447

seq1  AGAAGAAATACAGCTCCCAGAAGCTAATAACAGAACATTTAGAGAGATGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATACAGCTCCCAGAAGCTAATAACAGAACATTTAGAGAGATGC  497

seq1  TGGCGGTCCAGGGTTCCATTGCACTTGAGAAGCCCAGAGCACTACGTCTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTCCAGGGTTCCATTGCACTTGAGAAGCCCAGAGCACTACGTCTG  547

seq1  CCTTCCGTAAGTGGGAATTCCACAGTTTCCCAAATCCATGCATCCTATTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGTAAGTGGGAATTCCACAGTTTCCCAAATCCATGCATCCTATTA  597

seq1  AACATGCACTCAAGAAAGCAGCCGCATCCACGGCCTCAGCTTATAGCAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCACTCAAGAAAGCAGCCGCATCCACGGCCTCAGCTTATAGCAGA  647

seq1  TTTATGATGCTTCTGAGGTTTGGATGGATAGCACTCACTGTGGCTGATAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATGCTTCTGAGGTTTGGATGGATAGCACTCACTGTGGCTGATAG  697

seq1  GTGTGCACTTTTATCTATTGCTCCTACTCAGGAGAGAGAAATCCCAACAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTTTTATCTATTGCTCCTACTCAGGAGAGAGAAATCCCAACAG  747

seq1  AGAAGACACTCACTGAGCTTGGCAAACCGCCTACATCCAACAATGTAGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACTCACTGAGCTTGGCAAACCGCCTACATCCAACAATGTAGCA  797

seq1  GGTCTTTGGATGCTCTCCTGAGTGGTCCCAGACAGACGCTGCCCAGAGTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGGATGCTCTCCTGAGTGGTCCCAGACAGACGCTGCCCAGAGTA  847

seq1  CCTCTGACTATATCCAGTGAGGCTCCAGGGGCTTCTCTTCTTGAAAACTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTATATCCAGTGAGGCTCCAGGGGCTTCTCTTCTTGAAAACTC  897

seq1  TCTCCCTTAAAATGAGAAAAATCTTCACTACTGCCAGTGTGACTGCTCCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTAAAATGAGAAAAATCTTCACTACTGCCAGTGTGACTGCTCCA  947

seq1  GATGAATCCCATAGAGATAAAGATGTGACCTTGTGCCATTGAGTTCTCAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCCCATAGAGATAAAGATGTGACCTTGTGCCATTGAGTTCTCAG  997

seq1  CTCCTGCCAGAGCTTCCCTAGTCAGGACATGGAAAGACTAACTACCTCAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCAGAGCTTCCCTAGTCAGGACATGGAAAGACTAACTACCTCAT  1047

seq1  CAAACACACTCAGTATGAAATCTCAGGCTCACTCTCTCCCCACCAGCTCC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACTCAGTATGAAATCTCAGGCTCACTCTCTCCCCACCAGCTCC  1097

seq1  CCACCCTTCGCACTCTGTAGCACTGTGGAATTC  1121
      |||||||||||||||||||||||||||||||||
seq2  CCACCCTTCGCACTCTGTAGCACTGTGGAATTC  1130


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