BAC Information

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BAC

Clone NameB6Ng01-250P24
Chromosome15 (Build37)
Map Location 80,745,196 - 80,746,312
singlet/doubletsinglet
Overlap geneTnrc6b
Upstream geneCbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250P24.bB6Ng01-250P24.g
ACCGA058385GA058386
length1,2171,106
definitionB6Ng01-250P24.b B6Ng01-250P24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcataggcctactgtcacacttctctgactgtggaatga
gttctttggtcagaagcaatactgtgtgggataccatgatggtggataaa
acattctgtcagtccacaaatggcagttttggcagaaacattacgggcag
gaaagacaaatctataaccagaataagtacctactccagtatgaataaaa
cattgtcctttccacagaggaggtagtccaatgtagtcatcctgccacca
ggttgctagctggtcacctcgaggaatggtgcatatctggggctcagtgt
tggtcccttctgttggcagatgtggcattcagcagcagctgtagccaggt
cagccttggtgagtggaagtctgtgttgctgagcccaagcataacctcca
tctcgaccaccatggccactttgttcatgtgcccattgagcaatgacagg
gatggctggggaaagaggctgactatccacagaacgggtcatcttatcca
cttgattactgaactcctcctcagctgaagtcaccttttggtgagcattt
atttgggacacaaatatcttcacatcctttgcccatttgaggagatttgt
ctacatatttcttccccagatgtctttctcaccaatttttcaatcatggt
ctttccaagtccctgaccatccaaccaattcattggctacagcccatgag
tcagtgaacagttgtacatctggccatttcctcttctaaatgaactgcaa
taccatttgtattgcccaaagttctgtccactgtgaagatttcccttcac
ccatatctttccaggttgtcctagaaagggattgtaatgctgcagctgtc
catttctgggtggggcctgcataacgtgcagagccatcagtaaaccaggt
cctagtcttctctttcctcggtcagctgattgtagggcacatgccatgaa
ggctgtaggcgcttgctttggcagcaacttggcattgtaacaggagtaga
aaccattaggcatttgagcaccttctttcacattaacttgcttgtaccct
ttcaggacctactcgggaccctgatcgtgtttataccaccctctaatttt
gttattgaagacttgcctacctgtgtcgcaatcttacctttatgtgatgc
agtcctggataccacagctcatggatgtgcaagtctcagagtgcacctag
cgtggctgacactcgtg
gaattctttttttgtttgttttttgtttttgttttttcgagacagggttt
ctctgtatagccctggctgtcctggaactcactctgtagaccaggatggc
ctcgaactcagaaatctgcctgcctctgcctcccaagtgctgggattaaa
ggcatgtgccaccatgcccggcatagatgagaattcttaaggtttaaact
ttgttcagagccccttgttctctgtgagttagtgtccctccagacagcat
ctgagtcatactggattagccttgcctgtccatcatttcctttcagagct
tcttcatttccctagaaaacagataagaagtctagaccttcttccagcct
tcaatgcaatgcttgtttcatttgtcaatatttcatttggattcagagtt
gtctccatgagaatcaatatagataagtgtctggtgttcctgctgcagag
cctcagcagtcttaacccagccagctcattcaggtttctgttataaaccc
tctttaataagcccattataaaacttctttaataacccccatgcagagac
tgggaaagaagccacccagagctctctgcctgtcccattaagcatgatca
aaatcaagaataatttactgaaattataaaggctgttttatggactgagt
aaccctagtcttgggtcatccatagctctgggcactttaataacttcctc
aggctagtgatttgccaggtctggataataaatataaataaaatggcatg
ctaaaagatacctcagtacagtatcctctttccttatcagaaaatgtaga
tcatgttttcccatttccttggcagtcaatccccaagataattgagcatt
tcattctgcactacctcactgtgctgtacctcaggtgtgagccacactgt
ccacagaaaagcaaatgtcctcttagaggatggagacactaataatattc
cttagtctaaccaacagattgcttactcagttatttattatagcatttta
ttatcctgaaatcattctatgtgctcatgatcacccacttctagactatg
cctcaataagtaaaaatatggctatttttacttaatgaacgttagccttc
aacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80745196_80746312
seq2: B6Ng01-250P24.g_67_1172

seq1  GAATTCTTTTTTTGTTTGTTTTTTGTTTTTGTTTTTTCGAGACAGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTGTTTGTTTTTTGTTTTTGTTTTTTCGAGACAGGGTTT  50

seq1  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGATGGC  100

seq1  CTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  150

seq1  GGCATGTGCCACCATGCCCGGCATAGATGAGAATTCTTAAGGTTTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGCCACCATGCCCGGCATAGATGAGAATTCTTAAGGTTTAAACT  200

seq1  TTGTTCAGAGCCCCTTGTTCTCTGTGAGTTAGTGTCCCTCCAGACAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGAGCCCCTTGTTCTCTGTGAGTTAGTGTCCCTCCAGACAGCAT  250

seq1  CTGAGTCATACTGGATTAGCCTTGCCTGTCCATCATTTCCTTTCAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATACTGGATTAGCCTTGCCTGTCCATCATTTCCTTTCAGAGCT  300

seq1  TCTTCATTTCCCTAGAAAACAGATAAGAAGTCTAGACCTTCTTCCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTCCCTAGAAAACAGATAAGAAGTCTAGACCTTCTTCCAGCCT  350

seq1  TCAATGCAATGCTTGTTTCATTTGTCAATATTTCATTTGGATTCAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCAATGCTTGTTTCATTTGTCAATATTTCATTTGGATTCAGAGTT  400

seq1  GTCTCCATGAGAATCAATATAGATAAGTGTCTGGTGTTCCTGCTGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGAGAATCAATATAGATAAGTGTCTGGTGTTCCTGCTGCAGAG  450

seq1  CCTCAGCAGTCTTAACCCAGCCAGCTCATTCAGGTTTCTGTTATAAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCAGTCTTAACCCAGCCAGCTCATTCAGGTTTCTGTTATAAACCC  500

seq1  TCTTTAATAAGCCCATTATAAAACTTCTTTAATAACCCCCATGCAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATAAGCCCATTATAAAACTTCTTTAATAACCCCCATGCAGAGAC  550

seq1  TGGGAAAGAAGCCACCCAGAGCTCTCTGCCTGTCCCATTAAGCATGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGAAGCCACCCAGAGCTCTCTGCCTGTCCCATTAAGCATGATCA  600

seq1  AAATCAAGAATAATTTACTGAAATTATAAAGGCTGTTTTATGGACTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAATAATTTACTGAAATTATAAAGGCTGTTTTATGGACTGAGT  650

seq1  AACCCTAGTCTTGGGTCATCCATAGCTCTGGGCACTTTAATAACTTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGTCTTGGGTCATCCATAGCTCTGGGCACTTTAATAACTTCCTC  700

seq1  AGGCTAGTGATTTGCCAGGTCTGGATAATAAATATAAATAAAATGGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTGATTTGCCAGGTCTGGATAATAAATATAAATAAAATGGCATG  750

seq1  CTAAAAGATACCTCAGTACAGTATCCTCTTTCCTTATCAGAAAATGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATACCTCAGTACAGTATCCTCTTTCCTTATCAGAAAATGTAGA  800

seq1  TCATGTTTTCCCATTTCCTTGGCAGTCAATCCCCAAGATAATTGAGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTCCCATTTCCTTGGCAGTCAATCCCCAAGATAATTGAGCATT  850

seq1  TCATTCTGCACTACCTCACTGTGCTGTACCTCAGGGTGTGAGCCACACTG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATTCTGCACTACCTCACTGTGCTGTACCTCA-GGTGTGAGCCACACTG  899

seq1  TCCACAGAAAAGCAAATGTCCTCTTAGAGGATGGAGACACTAATAATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAAAAGCAAATGTCCTCTTAGAGGATGGAGACACTAATAATATT  949

seq1  CCCTTAGTCTAAACCAAACAGATTGCTTACTCAG-TATTTATATAAGCAT  999
       |||||||||||  | |||||||||||||||||| |||||||   |||||
seq2  -CCTTAGTCTAA--CCAACAGATTGCTTACTCAGTTATTTATTATAGCAT  996

seq1  TTTATTATCCTGAAAATCATTCTATGTGCTCATGATTCACCACTCTAAGA  1049
      |||||||||||| |||||||||||||||||||||||   |||||   |||
seq2  TTTATTATCCTG-AAATCATTCTATGTGCTCATGATCACCCACTTCTAGA  1045

seq1  CTATGCTCAAATTAAAGTAAAAAAATTATGGCTATTTTTTACTTAATGAA  1099
      ||||||   |||  |||||||||   |||||||| |||||||||||||||
seq2  CTATGCCTCAAT--AAGTAAAAA---TATGGCTA-TTTTTACTTAATGAA  1089

seq1  CGTTAAGCTTTCAACTTT  1117
      |||| ||| |||||||||
seq2  CGTT-AGCCTTCAACTTT  1106