BAC Information

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BAC

Clone NameB6Ng01-251J06
Chromosome15 (Build37)
Map Location 86,257,997 - 86,375,840
singlet/doubletdoublet
Overlap geneTbc1d22a
Upstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251J06.bB6Ng01-251J06.g
ACCGA058803GA058804
length1,0811,058
definitionB6Ng01-251J06.b B6Ng01-251J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,374,767 - 86,375,840)(86,257,997 - 86,259,056)
sequence
gaattcaaaacacggagacagtgaatcgtgactgttcgtgcccccaaggg
acaggtttcttcactcaatgcccatactatcccagctcagctgtctactt
catccctggaccggaggcctctgtggcacggcagcctcctgagaccctaa
acccatcacagtctttcttagtaacacggattgtgcagaagaactgctat
gagaaatgaaggcagaattcccccaccaagtagaggccaggtccttctac
tgggcttgtttacctcatttcctagatctggagaggcctgcttcagggaa
agcacatgggatggcccatcttatctaagactcaaggagaggagatagga
gaagacccaattcccatgctcacctgccctacctggaccatgcaagacaa
cacagtgttagtgtcaaaatagatagacctggaccacaatgtcactgtgt
cagaataggtcttgacagaacactcacccagcagtggtaacaagagggag
gggaaggagacttggggctgccagcagacactgtgcgactgtagtgttac
aacccagcttggcaaggtagacacgcagcaggagacagccgttcctcttc
ccctcagcctgacctcctgctctgcatactggagctgccttccctggaca
ccttatcaactgcagcaaaatatgtctgtctgcacatccatctgcaagcc
agcctcctgccagggcctgtcagataacagcaatacagacagataaagta
ccttggggacatgagctgggcaggctgctgagaggcccaaggagctatca
tgtataggagaacacagatgtgccattctggtgtcagccttcaaggtgaa
cccttggtcacttgcctctttccaaggatacccaggaaactccaaccagt
ggcctcctcctggttccagcacctccagatgaaaccagctctgtgcatca
gtcacacactgcacaaggggtcactagctatcactgggcttatcttcttg
tactggtggatctaggaggttccaggatgggtcttgtccaatttgtcatg
aattcaccatgcaacaatgaaactgcctctc
gaattccaatggaggaataagccaggagccaagaggccctctgaagaaag
tgggccacgtggaaggggcaggagggaggcccagcctctcagagcacctg
tgctctttctcctctcactttagaagcatggattgctttatttaaatatt
aaaccaaagcacaccaagttatgaaacctgtccttgaaaaccagagtaaa
actgattttttttttaaaaaaagcctaaactccatcaagtctgtgcttta
atcgcccaaagaaaactccatcagatagactttctagcagttgtagtgtg
cagtccttgtagaagatagcttagccaaaaaacaaattctagtaataaaa
aataaaaaataaaattaagagcactattcaataaacattcacagcagtaa
tattagtgttgttttgaaactgtttacacggactgaaatgcatacttaca
tatgtatattagggaaaaacaaataagtaattatgataatgctataggaa
ttaagatttttaataccagagagaagagactcaagcatgaattcaaagaa
ttaaaatatatataatatcttaaatatgacttaagacttggcttgaaatt
atggtgcatttttttctttttaaaaaatgaaattttaatgcctagttctt
catgcgaaatcactgtatccaaaaggaatgtggggagggtcccagtcctg
cctcagccctccaccatgtcctgtgagaagagaccagggcttcttaggat
gccctggtgagcctgcaacaggaatcacaaaaagtggcacctctggcaaa
gccccaggcagggtcctgtcagcaccctgataaaaggggcattaggaggc
cttcctcagggccatttactggggcagtctttgtctatggattcattgta
atttctaaagcaaaccctagtttcctttagaggcagctaagtcaccagct
gggtagaagaagagaaagattcgggcatgcatgttgttctcctgttgact
agcagcttttggaaggggcacgctttcttcagcagagtgcagtgtagtgc
cagagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_86374767_86375840
seq2: B6Ng01-251J06.b_46_1126 (reverse)

seq1  GAGAGGCAG-TTCATTG-TGCATGGTGAATTCATGACAAA-TGGACAAGA  47
      ||||||||| ||||||| |||||||||||||||||||||| |||||||||
seq2  GAGAGGCAGTTTCATTGTTGCATGGTGAATTCATGACAAATTGGACAAGA  50

seq1  CCCATCCTGG-ACCTCCTAGATCCACCAGTAC-AGAAGATAAG-CCAGTG  94
      |||||||||| ||||||||||||||||||||| |||||||||| ||||||
seq2  CCCATCCTGGAACCTCCTAGATCCACCAGTACAAGAAGATAAGCCCAGTG  100

seq1  ATAGCTAGTGACCCC-TGTGCAGTGTGTGACTGATGCACAGAGCTGGTTT  143
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGCTAGTGACCCCTTGTGCAGTGTGTGACTGATGCACAGAGCTGGTTT  150

seq1  CATCTGGAGGTGCTGGAACCAGGAGGAGGCCACTGGTTGGAGTTTCCTGG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAGGTGCTGGAACCAGGAGGAGGCCACTGGTTGGAGTTTCCTGG  200

seq1  GTATCCTTGGAAAGAGGCAAGTGACCAAGGGTTCACCTTGAAGGCTGACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTGGAAAGAGGCAAGTGACCAAGGGTTCACCTTGAAGGCTGACA  250

seq1  CCAGAATGGCACATCTGTGTTCTCCTATACATGATAGCTCCTTGGGCCTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGGCACATCTGTGTTCTCCTATACATGATAGCTCCTTGGGCCTC  300

seq1  TCAGCAGCCTGCCCAGCTCATGTCCCCAAGGTACTTTATCTGTCTGTATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCCTGCCCAGCTCATGTCCCCAAGGTACTTTATCTGTCTGTATT  350

seq1  GCTGTTATCTGACAGGCCCTGGCAGGAGGCTGGCTTGCAGATGGATGTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTATCTGACAGGCCCTGGCAGGAGGCTGGCTTGCAGATGGATGTGC  400

seq1  AGACAGACATATTTTGCTGCAGTTGATAAGGTGTCCAGGGAAGGCAGCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACATATTTTGCTGCAGTTGATAAGGTGTCCAGGGAAGGCAGCTC  450

seq1  CAGTATGCAGAGCAGGAGGTCAGGCTGAGGGGAAGAGGAACGGCTGTCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGCAGAGCAGGAGGTCAGGCTGAGGGGAAGAGGAACGGCTGTCTC  500

seq1  CTGCTGCGTGTCTACCTTGCCAAGCTGGGTTGTAACACTACAGTCGCACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCGTGTCTACCTTGCCAAGCTGGGTTGTAACACTACAGTCGCACA  550

seq1  GTGTCTGCTGGCAGCCCCAAGTCTCCTTCCCCTCCCTCTTGTTACCACTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCTGGCAGCCCCAAGTCTCCTTCCCCTCCCTCTTGTTACCACTG  600

seq1  CTGGGTGAGTGTTCTGTCAAGACCTATTCTGACACAGTGACATTGTGGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAGTGTTCTGTCAAGACCTATTCTGACACAGTGACATTGTGGTC  650

seq1  CAGGTCTATCTATTTTGACACTAACACTGTGTTGTCTTGCATGGTCCAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTATCTATTTTGACACTAACACTGTGTTGTCTTGCATGGTCCAGG  700

seq1  TAGGGCAGGTGAGCATGGGAATTGGGTCTTCTCCTATCTCCTCTCCTTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGGTGAGCATGGGAATTGGGTCTTCTCCTATCTCCTCTCCTTGA  750

seq1  GTCTTAGATAAGATGGGCCATCCCATGTGCTTTCCCTGAAGCAGGCCTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGATAAGATGGGCCATCCCATGTGCTTTCCCTGAAGCAGGCCTCT  800

seq1  CCAGATCTAGGAAATGAGGTAAACAAGCCCAGTAGAAGGACCTGGCCTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTAGGAAATGAGGTAAACAAGCCCAGTAGAAGGACCTGGCCTCT  850

seq1  ACTTGGTGGGGGAATTCTGCCTTCATTTCTCATAGCAGTTCTTCTGCACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGGGGGAATTCTGCCTTCATTTCTCATAGCAGTTCTTCTGCACA  900

seq1  ATCCGTGTTACTAAGAAAGACTGTGATGGGTTTAGGGTCTCAGGAGGCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTGTTACTAAGAAAGACTGTGATGGGTTTAGGGTCTCAGGAGGCTG  950

seq1  CCGTGCCACAGAGGCCTCCGGTCCAGGGATGAAGTAGACAGCTGAGCTGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCACAGAGGCCTCCGGTCCAGGGATGAAGTAGACAGCTGAGCTGG  1000

seq1  GATAGTATGGGCATTGAGTGAAGAAACCTGTCCCTTGGGGGCACGAACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATGGGCATTGAGTGAAGAAACCTGTCCCTTGGGGGCACGAACAG  1050

seq1  TCACGATTCACTGTCTCCGTGTTTTGAATTC  1074
      |||||||||||||||||||||||||||||||
seq2  TCACGATTCACTGTCTCCGTGTTTTGAATTC  1081

seq1: chr15_86257997_86259056
seq2: B6Ng01-251J06.g_65_1122

seq1  GAATTCCAATGGAGGAATAAGCCAGGAGCCAAGAGGCCCTCTGAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGGAGGAATAAGCCAGGAGCCAAGAGGCCCTCTGAAGAAAG  50

seq1  TGGGCCACGTGGAAGGGGCAGGAGGGAGGCCCAGCCTCTCAGAGCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACGTGGAAGGGGCAGGAGGGAGGCCCAGCCTCTCAGAGCACCTG  100

seq1  TGCTCTTTCTCCTCTCACTTTAGAAGCATGGATTGCTTTATTTAAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTCTCCTCTCACTTTAGAAGCATGGATTGCTTTATTTAAATATT  150

seq1  AAACCAAAGCACACCAAGTTATGAAACCTGTCCTTGAAAACCAGAGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGCACACCAAGTTATGAAACCTGTCCTTGAAAACCAGAGTAAA  200

seq1  ACTGATTTTTTTTTTAAAAAAAGCCTAAACTCCATCAAGTCTGTGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTTTTTTTAAAAAAAGCCTAAACTCCATCAAGTCTGTGCTTTA  250

seq1  ATCGCCCAAAGAAAACTCCATCAGATAGACTTTCTAGCAGTTGTAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCCAAAGAAAACTCCATCAGATAGACTTTCTAGCAGTTGTAGTGTG  300

seq1  CAGTCCTTGTAGAAGATAGCTTAGCCAAAAAACAAATTCTAGTAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTGTAGAAGATAGCTTAGCCAAAAAACAAATTCTAGTAATAAAA  350

seq1  AATAAAAAATAAAATTAAGAGCACTATTCAATAAACATTCACAGCAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATAAAATTAAGAGCACTATTCAATAAACATTCACAGCAGTAA  400

seq1  TATTAGTGTTGTTTTGAAACTGTTTACACGGACTGAAATGCATACTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGTTGTTTTGAAACTGTTTACACGGACTGAAATGCATACTTACA  450

seq1  TATGTATATTAGGGAAAAACAAATAAGTAATTATGATAATGCTATAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATTAGGGAAAAACAAATAAGTAATTATGATAATGCTATAGGAA  500

seq1  TTAAGATTTTTAATACCAGAGAGAAGAGACTCAAGCATGAATTCAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTTTAATACCAGAGAGAAGAGACTCAAGCATGAATTCAAAGAA  550

seq1  TTAAAATATATATAATATCTTAAATATGACTTAAGACTTGGCTTGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATATATAATATCTTAAATATGACTTAAGACTTGGCTTGAAATT  600

seq1  ATGGTGCATTTTTTTCTTTTTAAAAAATGAAATTTTAATGCCTAGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCATTTTTTTCTTTTTAAAAAATGAAATTTTAATGCCTAGTTCTT  650

seq1  CATGCGAAATCACTGTATCCAAAAGGAATGTGGGGAGGGTCCCAGTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGAAATCACTGTATCCAAAAGGAATGTGGGGAGGGTCCCAGTCCTG  700

seq1  CCTCAGCCCTCCACCATGTCCTGTGAGAAGAGACCAGGGCTTCTTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCCTCCACCATGTCCTGTGAGAAGAGACCAGGGCTTCTTAGGAT  750

seq1  GCCCTGGTGAGCCTGCAACAGGAATCACAAAAAGTGGCACCTCTGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTGAGCCTGCAACAGGAATCACAAAAAGTGGCACCTCTGGCAAA  800

seq1  GCCCCAGGCAGGGTCCTGTCAGCACCCTGATAAAAGGGGCATTAGGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCAGGGTCCTGTCAGCACCCTGATAAAAGGGGCATTAGGAGGC  850

seq1  CTTCCTCAGGGCCATTTACTGGGGCAGTCTTTGTCTATGGATTCATTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGGGCCATTTACTGGGGCAGTCTTTGTCTATGGATTCATTGTA  900

seq1  ATTTCTAAAGCAAACCCTAGTTTTCCTTTAGAGGCAGCTAAGTCACCAGC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTCTAAAGCAAACCCTAG-TTTCCTTTAGAGGCAGCTAAGTCACCAGC  949

seq1  T-GGTAG-ACAAGAGGAAAGATTCGGGCATGCATG-TGTTCTCCTGGTGA  997
      | ||||| | |||| |||||||||||||||||||| |||||||||| |||
seq2  TGGGTAGAAGAAGA-GAAAGATTCGGGCATGCATGTTGTTCTCCTGTTGA  998

seq1  CTAGGCAGC-TTTGGAAGGGGCACGCTTTCTTCAGGGAGAAGTGCAGGTG  1046
      ||| ||||| |||||||||||||||||||||||| | || |||||| |||
seq2  CTA-GCAGCTTTTGGAAGGGGCACGCTTTCTTCA-GCAG-AGTGCA-GTG  1044

seq1  TAGGTGCAGAGGGG  1060
      |||   ||||||||
seq2  TAGTGCCAGAGGGG  1058