BAC Information

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BAC

Clone NameB6Ng01-252G19
Chromosome15 (Build37)
Map Location 60,321,445 - 60,462,529
singlet/doubletdoublet
Overlap genenone
Upstream geneNsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094
Downstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252G19.bB6Ng01-252G19.g
ACCGA059424GA059425
length1,1241,184
definitionB6Ng01-252G19.b B6Ng01-252G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,321,445 - 60,322,565)(60,461,338 - 60,462,529)
sequence
gaattcaattcccaagtaagcctggaaagtaatcttttgtgctaggttgt
tctcctggattttgattattcaggaattccaagatagatcattgcaaact
tctgaggacctctggctttctcatacagaaacttcattttctcctcaata
gtaaattaaactattttctatgaattaattactaattattactaaatatt
aacagtaagcccattacattgggttttcatcaatgacctctttttattag
tctgagacttataggtaagaacattctgaaactttagtgtcattttatac
ttttcagtctgaagatataccattttgtaagttcatctcctcattaatag
acatattcatcattcactttaagtgaagaatattattccattttatcagc
tctgtgccacattatgagggtgtagcatccatatgttcatatatgtatgg
atatgattcaagtgaaggcttgggctgtttggtctgaattggcttatttc
aactgcttgtagaagagcacgtttccataagaacaatgaaggcatggact
tgaatttgaagtatagacagttacaagtatgtattgtttccagtgtttat
tgccatcccaggaaagatatcacttagcttggctcacagttccatgtcct
ctatactgatgtgatggtctgcattgtccattcctgggctgtttggtcag
ggaatattgaacacgttcataagtgcacacttaacccattgtaaaaagca
tttccatgtttgccatgagtttggcaacagagaacccccaaccttctgaa
taaacagtgtctattttgcttatcttggcatatgctaaatttattttcac
tttgaataataatgactactatgtgaaattttccctatgtttaaattttt
ataggagtttcagaatgtatggggagcagaaataaaaaaaaaaacaacaa
ttcagtattgagcattttcaacttgtttgcctacttgaaatgaaactgct
gactccaagaaaacaagatgctcttgttctactggactggggacccatga
cctcctcatccctttcttctcagtattcttgactgctttgagccttcttc
ctgaccttctaaatgaaggacaga

gaattctttccaacttttgttggcagaaagactggctggcagttcctggg
gggagccaggcattcttgtgtcttgcagccaagtagttgcagtgagctcc
ctggtgctcatcaaccttctgtgcctctcatgagtggcttggatgctgcc
ttgacttgaggaaacacctccttctccttgctttgtttgagtccaatatt
ttccccgtctctagtatgcaagacatggtagaaatgtgctttaaaaggtt
gtgaaaatttctgatctattgaaagaataaaattcagtctgtagttacaa
gtggaatcaataggaaaggatatataaactgagttctcggttgagaaaaa
tgttagtcagtgatggatggtggcagatgtcatggttgtcctactttcat
gctggagacacaggtgggagctgagaacaaataactagctgatggtctca
caaccaaattgcagaagataatacagaagccatggatttgaatctcaggt
tcgacttggggcatgaaggctaatgcctataattccagcactcaggaggt
tgagctaagagaacttccatgagatcaagggcagattaagatacttagtg
aattccagaccaagtagggttacagaatgagacactgtctatgggaaaca
gggggagtcctgagtgaatgtgtattatgagcatgaacattgccatgaca
agaatcccaatgtctcagacccatgagaatagcaaggtcttcccttataa
ggctccaagaaaagacaaagcaaaaccttccttaggctgagtactgatgg
tgacattatgtgtagagagtttcaatgtagctttcctctcctacagggat
ctaccaaatgtggctacaaaccacctactcatgcttgctgtgtataacag
gtaagtttccagtttgtatctctccatcaaagcacatagcccacccagcc
ccagtgtgtgtgtgtcattcttcttcaatctctgcatcccagtcgggtca
gttctaaagctgtgctggtcacagcaactatgtcaaaaaataaatctgtc
aagctgtatccaaataatattttctgcagatgtataacccagaatccctc
aactgtcagatgccagaaaacattgtccatcataaacaggtcctgttctc
cgaggttcaggaactttctggagggagaaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_60321445_60322565
seq2: B6Ng01-252G19.b_50_1173

seq1  GAATTCAATTCCCAAGTAAGCCTGGAAAGTAATCTTTTGTGCTAGGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAAGTAAGCCTGGAAAGTAATCTTTTGTGCTAGGTTGT  50

seq1  TCTCCTGGATTTTGATTATTCAGGAATTCCAAGATAGATCATTGCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGATTTTGATTATTCAGGAATTCCAAGATAGATCATTGCAAACT  100

seq1  TCTGAGGACCTCTGGCTTTCTCATACAGAAACTTCATTTTCTCCTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACCTCTGGCTTTCTCATACAGAAACTTCATTTTCTCCTCAATA  150

seq1  GTAAATTAAACTATTTTCTATGAATTAATTACTAATTATTACTAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAAACTATTTTCTATGAATTAATTACTAATTATTACTAAATATT  200

seq1  AACAGTAAGCCCATTACATTGGGTTTTCATCAATGACCTCTTTTTATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAGCCCATTACATTGGGTTTTCATCAATGACCTCTTTTTATTAG  250

seq1  TCTGAGACTTATAGGTAAGAACATTCTGAAACTTTAGTGTCATTTTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACTTATAGGTAAGAACATTCTGAAACTTTAGTGTCATTTTATAC  300

seq1  TTTTCAGTCTGAAGATATACCATTTTGTAAGTTCATCTCCTCATTAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTCTGAAGATATACCATTTTGTAAGTTCATCTCCTCATTAATAG  350

seq1  ACATATTCATCATTCACTTTAAGTGAAGAATATTATTCCATTTTATCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCATCATTCACTTTAAGTGAAGAATATTATTCCATTTTATCAGC  400

seq1  TCTGTGCCACATTATGAGGGTGTAGCATCCATATGTTCATATATGTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCACATTATGAGGGTGTAGCATCCATATGTTCATATATGTATGG  450

seq1  ATATGATTCAAGTGAAGGCTTGGGCTGTTTGGTCTGAATTGGCTTATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTCAAGTGAAGGCTTGGGCTGTTTGGTCTGAATTGGCTTATTTC  500

seq1  AACTGCTTGTAGAAGAGCACGTTTCCATAAGAACAATGAAGGCATGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTGTAGAAGAGCACGTTTCCATAAGAACAATGAAGGCATGGACT  550

seq1  TGAATTTGAAGTATAGACAGTTACAAGTATGTATTGTTTCCAGTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGAAGTATAGACAGTTACAAGTATGTATTGTTTCCAGTGTTTAT  600

seq1  TGCCATCCCAGGAAAGATATCACTTAGCTTGGCTCACAGTTCCATGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCCAGGAAAGATATCACTTAGCTTGGCTCACAGTTCCATGTCCT  650

seq1  CTATACTGATGTGATGGTCTGCATTGTCCATTCCTGGGCTGTTTGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTGATGTGATGGTCTGCATTGTCCATTCCTGGGCTGTTTGGTCAG  700

seq1  GGAATATTGAACACGTTCATAAGTGCACACTTAACCCATTGTAAAAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGAACACGTTCATAAGTGCACACTTAACCCATTGTAAAAAGCA  750

seq1  TTTCCATGTTTGCCATGAGTTTGGCAACAGAGAACCCCCAACCTTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGTTTGCCATGAGTTTGGCAACAGAGAACCCCCAACCTTCTGAA  800

seq1  TAAACAGTGTCTATTTTGCTTATCTTGGCATATGCTAAATTTATTTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTGTCTATTTTGCTTATCTTGGCATATGCTAAATTTATTTTCAC  850

seq1  TTTGAATAATAATGACTACTATGTGAAATTTTCCCTATGTTTAAATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAATAATGACTACTATGTGAAATTTTCCCTATGTTTAAATTTTT  900

seq1  ATAGGAGTTTCAGAATGTATGGGGAGCAGAAAATAAAAAAAAAAAACAAC  950
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  ATAGGAGTTTCAGAATGTATGGGGAGCAGAAA--TAAAAAAAAAAACAAC  948

seq1  AATTCAGTATTGAGCATTTTCAACTTGTTTGCCTACTTGAAATGAAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTATTGAGCATTTTCAACTTGTTTGCCTACTTGAAATGAAACTG  998

seq1  CTGACTCCAAGAAAACAAGATGCTCTTG-TCTACTGGACTGGGGACCCAT  1049
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGACTCCAAGAAAACAAGATGCTCTTGTTCTACTGGACTGGGGACCCAT  1048

seq1  GA-CTCCTCATCCCTT--CTCTCAGTA-TCTTGACTGCTTTGGTTGCTTC  1095
      || |||||||||||||   |||||||| ||||||||||||| |   ||||
seq2  GACCTCCTCATCCCTTTCTTCTCAGTATTCTTGACTGCTTT-GAGCCTTC  1097

seq1  TT-CTGACCTCCTAAATGAGGGACAGA  1121
      || ||||||| |||||||| |||||||
seq2  TTCCTGACCTTCTAAATGAAGGACAGA  1124


seq1: chr15_60461338_60462529
seq2: B6Ng01-252G19.g_66_1249 (reverse)

seq1  TCCA-TTCTCCCCTCAGAAAAGTTTCCTGAACCT-TGAGAACAGGACTGT  48
      |||| |||||||  ||||||   |||||||||||  |||||||||||   
seq2  TCCATTTCTCCCTCCAGAAA--GTTCCTGAACCTCGGAGAACAGGACCTG  48

seq1  TTTATGGATGACAAATGTTTTCT-GCATCTTGACCAGTTGAGGGTTTCTG  97
      ||||| ||||   |||||||||| ||||| ||| |||||||||| |||||
seq2  TTTAT-GATGGACAATGTTTTCTGGCATC-TGA-CAGTTGAGGGATTCTG  95

seq1  TGTTAATTACCATCTGCCAGAAAAATATTATTT-GATACAGGCTTGACAG  146
       ||||  || |||||| ||| |||||||||||| |||||| |||||||||
seq2  GGTTA--TA-CATCTG-CAG-AAAATATTATTTGGATACA-GCTTGACAG  139

seq1  ATTTATTTTTTGACATAGTTGCTGTGACCAGCACAGCTTTAGAACTGACC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTGACATAGTTGCTGTGACCAGCACAGCTTTAGAACTGACC  189

seq1  CGACTGGGATGGCAGAGATTGAAGAAGAAATGACACACACACACTGGGGC  246
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  CGACTGGGAT-GCAGAGATTGAAGAAG-AATGACACACACACACTGGGGC  237

seq1  TGGGTGGGCTATGTGCTTTGATGGAGAGATACAAACTGGAAACTTACCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGCTATGTGCTTTGATGGAGAGATACAAACTGGAAACTTACCTG  287

seq1  TTATACACAGCAAGCATGAGTAGGTGGTTTGTAGCCACATTTGGTAGATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACAGCAAGCATGAGTAGGTGGTTTGTAGCCACATTTGGTAGATC  337

seq1  CCTGTAGGAGAGG-AAGCTACATTGAAACTCTCTACACATAATGTCACCA  395
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGAGAGGAAAGCTACATTGAAACTCTCTACACATAATGTCACCA  387

seq1  TCAGTACTCAGCCTAAGGAAGGTTTTGCTTTGTCTTTTCTTGGAGCCTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTCAGCCTAAGGAAGGTTTTGCTTTGTCTTTTCTTGGAGCCTTA  437

seq1  TAAGGGAAGACCTTGCTATTCTCATGGGTCTGAGACATTGGGATTCTTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAGACCTTGCTATTCTCATGGGTCTGAGACATTGGGATTCTTGT  487

seq1  CATGGCAATGTTCATGCTCATAATACACATTCACTCAGGACTCCCCCTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAATGTTCATGCTCATAATACACATTCACTCAGGACTCCCCCTGT  537

seq1  TTCCCATAGACAGTGTCTCATTCTGTAACCCTACTTGGTCTGGAATTCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGACAGTGTCTCATTCTGTAACCCTACTTGGTCTGGAATTCAC  587

seq1  TAAGTATCTTAATCTGCCCTTGATCTCATGGAAGTTCTCTTAGCTCAACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCTTAATCTGCCCTTGATCTCATGGAAGTTCTCTTAGCTCAACC  637

seq1  TCCTGAGTGCTGGAATTATAGGCATTAGCCTTCATGCCCCAAGTCGAACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGAATTATAGGCATTAGCCTTCATGCCCCAAGTCGAACC  687

seq1  TGAGATTCAAATCCATGGCTTCTGTATTATCTTCTGCAATTTGGTTGTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCAAATCCATGGCTTCTGTATTATCTTCTGCAATTTGGTTGTGA  737

seq1  GACCATCAGCTAGTTATTTGTTCTCAGCTCCCACCTGTGTCTCCAGCATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCAGCTAGTTATTTGTTCTCAGCTCCCACCTGTGTCTCCAGCATG  787

seq1  AAAGTAGGACAACCATGACATCTGCCACCATCCATCACTGACTAACATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGACAACCATGACATCTGCCACCATCCATCACTGACTAACATTT  837

seq1  TTCTCAACCGAGAACTCAGTTTATATATCCTTTCCTATTGATTCCACTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCGAGAACTCAGTTTATATATCCTTTCCTATTGATTCCACTTG  887

seq1  TAACTACAGACTGAATTTTATTCTTTCAATAGATCAGAAATTTTCACAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAGACTGAATTTTATTCTTTCAATAGATCAGAAATTTTCACAAC  937

seq1  CTTTTAAAGCACATTTCTACCATGTCTTGCATACTAGAGACGGGGAAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGCACATTTCTACCATGTCTTGCATACTAGAGACGGGGAAAAT  987

seq1  ATTGGACTCAAACAAAGCAAGGAGAAGGAGGTGTTTCCTCAAGTCAAGGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTCAAACAAAGCAAGGAGAAGGAGGTGTTTCCTCAAGTCAAGGC  1037

seq1  AGCATCCAAGCCACTCATGAGAGGCACAGAAGGTTGATGAGCACCAGGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAAGCCACTCATGAGAGGCACAGAAGGTTGATGAGCACCAGGGA  1087

seq1  GCTCACTGCAACTACTTGGCTGCAAGACACAAGAATGCCTGGCTCCCCCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGCAACTACTTGGCTGCAAGACACAAGAATGCCTGGCTCCCCCC  1137

seq1  AGGAACTGCCAGCCAGTCTTTCTGCCAACAAAAGTTGGAAAGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGCCAGCCAGTCTTTCTGCCAACAAAAGTTGGAAAGAATTC  1184


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