BAC Information

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BAC

Clone NameB6Ng01-252K09
Chromosome15 (Build37)
Map Location 102,655,865 - 102,793,085
singlet/doubletdoublet
Overlap geneHoxc13, Hoxc12, Hoxc11
Upstream geneLOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
Downstream geneHoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K09.bB6Ng01-252K09.g
ACCGA059588GA059589
length1,0701,087
definitionB6Ng01-252K09.b B6Ng01-252K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,792,003 - 102,793,085)(102,655,865 - 102,656,942)
sequence
ggaattccaaagttcgctatcctagtcagtctgactgcttcccggctctt
cggaaaccgaccagttatttaactttacttatggaattgaaaccagacca
cacacaccccagagagacgcattgggaggaggagcccaaggggagggtga
cttgggggaagaccctggtccccactttaatggtttgtttctgagttact
ccaataggtcagatttccagtcagtgtcgactgtggttgggcttctttac
tcctgagggtaaaaaaccggattctccttcactagctaaatttccctttt
gaaggtctgttttggttttgttgttgttgtctttatttttcttttctttc
ttcctttcctttccttttcattttccagctttctcttctttttctatttt
tctccttcttttttctttgtaattttcccctcaagattttaatttattgt
tccctcattttcattttcttttattataaactttatcctttgttttcttc
ttcttcttcttttccttcctctcccccaaggctttcttatttttctctat
tgtgctgtgttatgtgagaaggaaaatgacaagttggatccttcttattc
tagttgctcgggcttggagttgaccttctgccttcaggctcggctcagct
cctcacaaggcgaagtgtagaacagtcagccagcaaaggtgggcaggcct
cagagtcgccattagagggatgggaatgccgactcagaagcacacctccc
cctaccccacccccagtcagtgccaaaggctccttgatccttgaaatgcc
tggctccatgtcttcatttcatcacactaaagaaacttggtccaccagac
ccacaattagagagaacttcccttatctttgttctgccggaactggaaac
tgcatagactaagtttagctcatttatgctctcagcactggcgatagaaa
gtgagagagtgaggctctgtcagagagggtagaggcagtccaaaggtcat
atgtaagtggcatttcagcatgtcctaccaagtactttggttctctaata
aagactcaggagactgagcc
gaattcccaagcacagatgtctgggattctttttgtcagcaccttccaaa
ggttgagcaagtaacagcacacagaacagcacaggagaggaaagtttcat
gacaagagtcaactaatacgtttattagcaagaattctaagatccagtca
ttttatcccaacttctgatctcagagtgactgcaggagtaacggagaaga
cattcaatgccttccagtctcactgctttcttagcaaagtatattgatga
gacatcgttcttaacccagataactgagatttgacacagtcattttagat
aggaggtggagtctctgatgttctttctcacttgcgagccctgattcaat
ttcaaccaggtctaggcttcttatagctgggcaaagcagttacagcctca
gaggaaattatagctctccaacagcttgggctttctcttgggaaacctta
ggcaggtcatctcttggggcggtggagcaagggtaggtggtgacggtgtg
tgggtgtctgggatgcgatgagttattaaggagattttttgcacttctcc
atttcttcctgtcctcatggctgtctacacagccccccaaaacaagcact
tagccaggactaactgcttgagtatataatctaggggcttttcctttctt
tattctagtaaatttagagggaggaaaaaggatttttcatttatccaaca
atcgtctctttcttgcttggtagccctggcaaaccttgacactcactatg
cagctagctctcatttagctttgaactttttgtcagtttccacaagtgcg
tgccaccacaaccagttcaactcacattttttaaaaaaatatccattata
aataacacattaggctatttgctgcagaataagaaatgatcaactgtctt
gaagacaaggagaacgttcatgttaagagagaggcaaagaatctaggtgg
atgaattttgaggctgaaggaatgctaagactttaattacgcacaatttc
tcgggggaagttcaccagtaaatgtccctggttggggtttggaaggacct
tgtacttggacttttcttatcctccagaattggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102792003_102793085
seq2: B6Ng01-252K09.b_45_1113 (reverse)

seq1  GGCTACAGTCCTCCTGAGTCTTTTATAGAGAACAAAAGTACTTGTGTAGG  50
      |||| |||| |||||||||||||  |||||||| |||||||||| ||| |
seq2  GGCT-CAGT-CTCCTGAGTCTTTATTAGAGAACCAAAGTACTTG-GTA-G  46

seq1  GACATGGCCTTGAAATGCCAACTTACATATGACCCTTTGGACCTGCCCTC  100
      ||||||    ||||||||| |||||||||||| |||||||| ||| ||||
seq2  GACATG---CTGAAATGCC-ACTTACATATGA-CCTTTGGA-CTG-CCTC  89

seq1  TACCCTCTCTGACAGAGCCTCACTCTCTCACTTTCCTATCGCCAGTGCTG  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACCCTCTCTGACAGAGCCTCACTCTCTCACTTT-CTATCGCCAGTGCTG  138

seq1  AGAGCATAAATGAGCTAAACTTTAGTCTATGCAGTTTTCCAGTTCCGGCA  200
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  AGAGCATAAATGAGCTAAAC-TTAGTCTATGCAG-TTTCCAGTTCCGGCA  186

seq1  GAACAAAGATAAGGGAAGTTCTCTCTAATTGTGGGTCTGGTGGACCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGATAAGGGAAGTTCTCTCTAATTGTGGGTCTGGTGGACCAAGT  236

seq1  TTCTTTAGTGTGATGAAATGAAGACATGGAGCCAGGCATTTCAAGGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGTGTGATGAAATGAAGACATGGAGCCAGGCATTTCAAGGATCA  286

seq1  AGGAGCCTTTGGCACTGACTGGGGGTGGGGTAGGGGGAGGTGTGCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTTTGGCACTGACTGGGGGTGGGGTAGGGGGAGGTGTGCTTCTG  336

seq1  AGTCGGCATTCCCATCCCTCTAATGGCGACTCTGAGGCCTGCCCACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGCATTCCCATCCCTCTAATGGCGACTCTGAGGCCTGCCCACCTTT  386

seq1  GCTGGCTGACTGTTCTACACTTCGCCTTGTGAGGAGCTGAGCCGAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGACTGTTCTACACTTCGCCTTGTGAGGAGCTGAGCCGAGCCTG  436

seq1  AAGGCAGAAGGTCAACTCCAAGCCCGAGCAACTAGAATAAGAAGGATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAGGTCAACTCCAAGCCCGAGCAACTAGAATAAGAAGGATCCA  486

seq1  ACTTGTCATTTTCCTTCTCACATAACACAGCACAATAGAGAAAAATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCATTTTCCTTCTCACATAACACAGCACAATAGAGAAAAATAAGA  536

seq1  AAGCCTTGGGGGAGAGGAAGGAAAAGAAGAAGAAGAAGAAAACAAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGGGGGAGAGGAAGGAAAAGAAGAAGAAGAAGAAAACAAAGGAT  586

seq1  AAAGTTTATAATAAAAGAAAATGAAAATGAGGGAACAATAAATTAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTATAATAAAAGAAAATGAAAATGAGGGAACAATAAATTAAAATC  636

seq1  TTGAGGGGAAAATTACAAAGAAAAAAGAAGGAGAAAAATAGAAAAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAAAATTACAAAGAAAAAAGAAGGAGAAAAATAGAAAAAGAAG  686

seq1  AGAAAGCTGGAAAATGAAAAGGAAAGGAAAGGAAGAAAGAAAAGAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGGAAAATGAAAAGGAAAGGAAAGGAAGAAAGAAAAGAAAAAT  736

seq1  AAAGACAACAACAACAAAACCAAAACAGACCTTCAAAAGGGAAATTTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAACAACAACAAAACCAAAACAGACCTTCAAAAGGGAAATTTAGC  786

seq1  TAGTGAAGGAGAATCCGGTTTTTTACCCTCAGGAGTAAAGAAGCCCAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGGAGAATCCGGTTTTTTACCCTCAGGAGTAAAGAAGCCCAACC  836

seq1  ACAGTCGACACTGACTGGAAATCTGACCTATTGGAGTAACTCAGAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCGACACTGACTGGAAATCTGACCTATTGGAGTAACTCAGAAACAA  886

seq1  ACCATTAAAGTGGGGACCAGGGTCTTCCCCCAAGTCACCCTCCCCTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAAAGTGGGGACCAGGGTCTTCCCCCAAGTCACCCTCCCCTTGGG  936

seq1  CTCCTCCTCCCAATGCGTCTCTCTGGGGTGTGTGTGGTCTGGTTTCAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCCAATGCGTCTCTCTGGGGTGTGTGTGGTCTGGTTTCAATT  986

seq1  CCATAAGTAAAGTTAAATAACTGGTCGGTTTCCGAAGAGCCGGGAAGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTAAAGTTAAATAACTGGTCGGTTTCCGAAGAGCCGGGAAGCAG  1036

seq1  TCAGACTGACTAGGATAGCGAACTTTGGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  TCAGACTGACTAGGATAGCGAACTTTGGAATTC  1069

seq1: chr15_102655865_102656942
seq2: B6Ng01-252K09.g_70_1156

seq1  GAATTCCCAAGCACAGATGTCTGGGATTCTTTTTGTCAGCACCTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGCACAGATGTCTGGGATTCTTTTTGTCAGCACCTTCCAAA  50

seq1  GGTTGAGCAAGTAACAGCACACAGAACAGCACAGGAGAGGAAAGTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGCAAGTAACAGCACACAGAACAGCACAGGAGAGGAAAGTTTCAT  100

seq1  GACAAGAGTCAACTAATACGTTTATTAGCAAGAATTCTAAGATCCAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGTCAACTAATACGTTTATTAGCAAGAATTCTAAGATCCAGTCA  150

seq1  TTTTATCCCAACTTCTGATCTCAGAGTGACTGCAGGAGTAACGGAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCCAACTTCTGATCTCAGAGTGACTGCAGGAGTAACGGAGAAGA  200

seq1  CATTCAATGCCTTCCAGTCTCACTGCTTTCTTAGCAAAGTATATTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATGCCTTCCAGTCTCACTGCTTTCTTAGCAAAGTATATTGATGA  250

seq1  GACATCGTTCTTAACCCAGATAACTGAGATTTGACACAGTCATTTTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCGTTCTTAACCCAGATAACTGAGATTTGACACAGTCATTTTAGAT  300

seq1  AGGAGGTGGAGTCTCTGATGTTCTTTCTCACTTGCGAGCCCTGATTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGAGTCTCTGATGTTCTTTCTCACTTGCGAGCCCTGATTCAAT  350

seq1  TTCAACCAGGTCTAGGCTTCTTATAGCTGGGCAAAGCAGTTACAGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCAGGTCTAGGCTTCTTATAGCTGGGCAAAGCAGTTACAGCCTCA  400

seq1  GAGGAAATTATAGCTCTCCAACAGCTTGGGCTTTCTCTTGGGAAACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATTATAGCTCTCCAACAGCTTGGGCTTTCTCTTGGGAAACCTTA  450

seq1  GGCAGGTCATCTCTTGGGGCGGTGGAGCAAGGGTAGGTGGTGACGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCATCTCTTGGGGCGGTGGAGCAAGGGTAGGTGGTGACGGTGTG  500

seq1  TGGGTGTCTGGGATGCGATGAGTTATTAAGGAGATTTTTTGCACTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCTGGGATGCGATGAGTTATTAAGGAGATTTTTTGCACTTCTCC  550

seq1  ATTTCTTCCTGTCCTCATGGCTGTCTACACAGCCCCCCAAAACAAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCTGTCCTCATGGCTGTCTACACAGCCCCCCAAAACAAGCACT  600

seq1  TAGCCAGGACTAACTGCTTGAGTATATAATCTAGGGGCTTTTCCTTTC-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGCCAGGACTAACTGCTTGAGTATATAATCTAGGGGCTTTTCCTTTCTT  650

seq1  TATTCTAGTAAATTTAGAGGGAGGAAAAAGGATTTTTCATTTATCCAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGTAAATTTAGAGGGAGGAAAAAGGATTTTTCATTTATCCAACA  700

seq1  ATCGTCTCTTTCTTGCTTGGTAGCCCTGGCAAACC-TGACACTCACTATG  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCGTCTCTTTCTTGCTTGGTAGCCCTGGCAAACCTTGACACTCACTATG  750

seq1  CAGCTAGCTCTCA-TTAGCTTTGAAC-TTTTGTCAGTTCCCACAAGTGCG  796
      ||||||||||||| |||||||||||| ||||||||||| |||||||||||
seq2  CAGCTAGCTCTCATTTAGCTTTGAACTTTTTGTCAGTTTCCACAAGTGCG  800

seq1  TGCCACCACAACCAGTTCAACTCACATTTTTTAAAAAAATATCCATTATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACAACCAGTTCAACTCACATTTTTTAAAAAAATATCCATTATA  850

seq1  AATAACACATTAGGCTATTTGCTGCAGAATAAGAAATGATC-ACTGTCTT  895
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATAACACATTAGGCTATTTGCTGCAGAATAAGAAATGATCAACTGTCTT  900

seq1  GAAGACAAGGAG-ACGGTCATGTTAAGAGAGAGGCAAAG-ATCTAGGT-G  942
      |||||||||||| ||| |||||||||||||||||||||| |||||||| |
seq2  GAAGACAAGGAGAACGTTCATGTTAAGAGAGAGGCAAAGAATCTAGGTGG  950

seq1  ATGAATTTTGAGGCTG-AGGAATGCTTAAGACTTTAGTTATGCAGCAGTT  991
      |||||||||||||||| |||||||| |||||||||| ||| ||| || ||
seq2  ATGAATTTTGAGGCTGAAGGAATGC-TAAGACTTTAATTACGCA-CAATT  998

seq1  TCT--GGGGAAGTTCACACAGTAGATGTCCCTGG-TGGGGTTTGGAAGGG  1038
      |||  |||||||||||| ||||| |||||||||| |||||||||||| ||
seq2  TCTCGGGGGAAGTTCAC-CAGTAAATGTCCCTGGTTGGGGTTTGGAA-GG  1046

seq1  ACCTTGACCTTGGACTTCTC-TATTCTCCAGAATTGGAAAA  1078
      ||||||  ||||||||| || ||| ||||||||||||||||
seq2  ACCTTGTACTTGGACTTTTCTTATCCTCCAGAATTGGAAAA  1087