BAC Information

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BAC

Clone NameB6Ng01-252P23
Chromosome15 (Build37)
Map Location 100,283,353 - 100,427,583
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1
Upstream geneC230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252P23.bB6Ng01-252P23.g
ACCGA059848GA059849
length1,102479
definitionB6Ng01-252P23.b B6Ng01-252P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,426,480 - 100,427,583)(100,283,353 - 100,283,837)
sequence
gaattccaggacagacaaggctattcagagagaccctgtatctgagagga
gagggaggagaagaaaaacaaaactggtataaactcttattcccctccaa
gacttactttgacattgtaactttagtacttgggcagtcattccatgaga
gagcaaatgcttccacgtccaggaccataaataatcaagtaaataaaatt
ataacagagatcttttacatttcataatgttttatgatttaaaccatctt
gtactcatgctttatttcagttaaaataatagcaatagtaggatggggga
atgtaactccatagtgccagtccatcactctttcccaaggtcccatcagc
taagagcgtgcacctgaaacctcagcacttgggcttgagaggcagggaga
ctggaagtttgcagtcatcagggatagggagttccaggccaggctggaat
acattgcaaccttgtctcaacaaacaaacaattcaaccatacaataacaa
aacacttaaccagcatttgtgtgttaggccctatggaaaatgcttgacat
cagtgcttctcaattcctttgaacaggggtcaagccctttcacaagggtt
gcatattggatatttacattgctgttcacaacagtagcaaaattagagtt
aggaaagagcaatgaaataattttaaagttggggagtcaccacaacacga
ggaactgtattaaagggctgcggcattgggaaggttgagaaccgctgtct
tccataaatattaccaattcaaagttggacatagtgacacaggggtgtag
tgatcacatgattgaacctagttacatagagaaacccaggccgaaaaatg
ttaccacgggggctggggatatggcccaatcctttgagagcattgctgct
ctagcagagggcccagggttctgttcccagcggccacatggcccctccca
cctgcctgtaaaatccgaagcagggaaatccacagagaaagcagctgaga
agtctcaaggctggaaaagggagtgcccgaagagatgtaaaattccttta
agtcattgaaaatactctggaactagaaagtgctatgctggccaacattg
tc
ttttcagaagcaagaagataaaataatgacgctttccagaaagtaggtag
acatgcagttttactaaatgaagtggctcagactcagagaggggagtacc
gtatcttctctcatctgcagatcctatatttgaatttttatatatgtgta
tacaaagccatgaaaagaagagagaggtattaaggaaggaaataagagag
agaaagacggtaacaaaatatatgtgacacaagagtggaaaggggacact
ttggaggggtttaagggtccaaggagggtcagggaagatggaagaaggag
atgccagaggaggatcaccagaaacacagtatgaactaccacaataaagg
ccatcactttgtatactaatttaaaaacaaagaagggcctgcaagatggc
tcagagggcaaaggtgcttgcaaccaaatctaaggatctgagttcatgtc
ttggaactcctgttgggggggaggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100426480_100427583
seq2: B6Ng01-252P23.b_46_1147 (reverse)

seq1  GACAATGTTGCGCAGCCATTAGCAC-TTCTAGTCCAAGAGTATTTTCAAT  49
      ||||||||||  ||||   |||||| ||||||| | ||||||||||||||
seq2  GACAATGTTGGCCAGC--ATAGCACTTTCTAGTTCCAGAGTATTTTCAAT  48

seq1  GACCTAAAAGGAAATTTTACATCTCTTCGGGCACTCCCCTTTCCAGCCTG  99
      ||| ||||  | |||||||||||||||||||||||||| |||||||||| 
seq2  GACTTAAA--GGAATTTTACATCTCTTCGGGCACTCCCTTTTCCAGCCTT  96

seq1  GGAACTTCCTCAGCTGCTTTCTCTGTGGATTTCCCTGCTTCGGATTTTAC  149
      |  |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTT-CTCAGCTGCTTTCTCTGTGGATTTCCCTGCTTCGGATTTTAC  145

seq1  AGGCAGGTGGGAGGGGCCATGTGGCCGCTGGGAACAGAA-CCTGGGCCCT  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCAGGTGGGAGGGGCCATGTGGCCGCTGGGAACAGAACCCTGGGCCCT  195

seq1  CTGCTAGAGCAGCAATGCTCTC-AAGGATTGGGCCATATCCCCAGCCCCC  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGCTAGAGCAGCAATGCTCTCAAAGGATTGGGCCATATCCCCAGCCCCC  245

seq1  GTGGTAACATTTTTCGGCCTGGGTTTCTCTATGTAACTAGGTTCAATCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAACATTTTTCGGCCTGGGTTTCTCTATGTAACTAGGTTCAATCAT  295

seq1  GTGATCACTACACCCCTGTGTCACTATGTCCAACTTTGAATTGGTAATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACTACACCCCTGTGTCACTATGTCCAACTTTGAATTGGTAATAT  345

seq1  TTATGGAAGACAGCGGTTCTCAACCTTCCCAATGCCGCAGCCCTTTAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAAGACAGCGGTTCTCAACCTTCCCAATGCCGCAGCCCTTTAATA  395

seq1  CAGTTCCTCGTGTTGTGGTGACTCCCCAACTTTAAAATTATTTCATTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTCGTGTTGTGGTGACTCCCCAACTTTAAAATTATTTCATTGCT  445

seq1  CTTTCCTAACTCTAATTTTGCTACTGTTGTGAACAGCAATGTAAATATCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAACTCTAATTTTGCTACTGTTGTGAACAGCAATGTAAATATCC  495

seq1  AATATGCAACCCTTGTGAAAGGGCTTGACCCCTGTTCAAAGGAATTGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAACCCTTGTGAAAGGGCTTGACCCCTGTTCAAAGGAATTGAGA  545

seq1  AGCACTGATGTCAAGCATTTTCCATAGGGCCTAACACACAAATGCTGGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGATGTCAAGCATTTTCCATAGGGCCTAACACACAAATGCTGGTT  595

seq1  AAGTGTTTTGTTATTGTATGGTTGAATTGTTTGTTTGTTGAGACAAGGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTGTTATTGTATGGTTGAATTGTTTGTTTGTTGAGACAAGGTT  645

seq1  GCAATGTATTCCAGCCTGGCCTGGAACTCCCTATCCCTGATGACTGCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTATTCCAGCCTGGCCTGGAACTCCCTATCCCTGATGACTGCAAA  695

seq1  CTTCCAGTCTCCCTGCCTCTCAAGCCCAAGTGCTGAGGTTTCAGGTGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTCTCCCTGCCTCTCAAGCCCAAGTGCTGAGGTTTCAGGTGCAC  745

seq1  GCTCTTAGCTGATGGGACCTTGGGAAAGAGTGATGGACTGGCACTATGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGCTGATGGGACCTTGGGAAAGAGTGATGGACTGGCACTATGGA  795

seq1  GTTACATTCCCCCATCCTACTATTGCTATTATTTTAACTGAAATAAAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTCCCCCATCCTACTATTGCTATTATTTTAACTGAAATAAAGCA  845

seq1  TGAGTACAAGATGGTTTAAATCATAAAACATTATGAAATGTAAAAGATCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACAAGATGGTTTAAATCATAAAACATTATGAAATGTAAAAGATCT  895

seq1  CTGTTATAATTTTATTTACTTGATTATTTATGGTCCTGGACGTGGAAGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATAATTTTATTTACTTGATTATTTATGGTCCTGGACGTGGAAGCA  945

seq1  TTTGCTCTCTCATGGAATGACTGCCCAAGTACTAAAGTTACAATGTCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCTCATGGAATGACTGCCCAAGTACTAAAGTTACAATGTCAAA  995

seq1  GTAAGTCTTGGAGGGGAATAAGAGTTTATACCAGTTTTGTTTTTCTTCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTTGGAGGGGAATAAGAGTTTATACCAGTTTTGTTTTTCTTCTC  1045

seq1  CTCCCTCTCCTCTCAGATACAGGGTCTCTCTGAATAGCCTTGTCTGTCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCCTCTCAGATACAGGGTCTCTCTGAATAGCCTTGTCTGTCCT  1095

seq1  GGAATTC  1104
      |||||||
seq2  GGAATTC  1102

seq1: chr15_100283353_100283837
seq2: B6Ng01-252P23.g_67_551

seq1  GAATTCTTTTCAGAAGCAAGAAGATAAAATAATGACGCTTTCCAGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAGAAGCAAGAAGATAAAATAATGACGCTTTCCAGAAAGT  50

seq1  AGGTAGACATGCAGTTTTACTAAATGAAGTGGCTCAGACTCAGAGAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGACATGCAGTTTTACTAAATGAAGTGGCTCAGACTCAGAGAGGGG  100

seq1  AGTACCGTATCTTCTCTCATCTGCAGATCCTATATTTGAATTTTTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCGTATCTTCTCTCATCTGCAGATCCTATATTTGAATTTTTATATA  150

seq1  TGTGTATACAAAGCCATGAAAAGAAGAGAGAGGTATTAAGGAAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATACAAAGCCATGAAAAGAAGAGAGAGGTATTAAGGAAGGAAATA  200

seq1  AGAGAGAGAAAGACGGTAACAAAATATATGTGACACAAGAGTGGAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGACGGTAACAAAATATATGTGACACAAGAGTGGAAAGGG  250

seq1  GACACTTTGGAGGGGTTTAAGGGTCCAAGGAGGGTCAGGGAAGATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTGGAGGGGTTTAAGGGTCCAAGGAGGGTCAGGGAAGATGGAAG  300

seq1  AAGGAGATGCCAGAGGAGGATCACCAGAAACACAGTATGAACTACCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGCCAGAGGAGGATCACCAGAAACACAGTATGAACTACCACAA  350

seq1  TAAAGGCCATCACTTTGTATACTAATTTAAAAACAAAGAAGGGCCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCATCACTTTGTATACTAATTTAAAAACAAAGAAGGGCCTGCAA  400

seq1  GATGGCTCAGAGGGCAAAGGTGCTTGCAACCAAATCTAAGGATCTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGAGGGCAAAGGTGCTTGCAACCAAATCTAAGGATCTGAGTT  450

seq1  CATGTCTTGGAACTCCTGTTGGGGGGGAGGGGAGA  485
      |||||||||||||||||||||||||||||||||||
seq2  CATGTCTTGGAACTCCTGTTGGGGGGGAGGGGAGA  485