BAC Information

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BAC

Clone NameB6Ng01-255I22
Chromosome15 (Build37)
Map Location 98,797,212 - 98,976,419
singlet/doubletdoublet
Overlap geneEG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
Upstream geneTmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a
Downstream geneKcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255I22.bB6Ng01-255I22.g
ACCGA061736GA061737
length1,172760
definitionB6Ng01-255I22.b B6Ng01-255I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,975,234 - 98,976,419)(98,797,212 - 98,797,971)
sequence
gaattctcagctcctcttccaggaccccgccatgcttcccaccttgatga
actgaacagtcccgccagggactgaacctccgtatctgtgtacgcctcaa
tcaaacgttgtcctttataagagttaccttgtcatggtgtctcttcccag
caacagacaccctaactaagacaagaacacttgctgctcttgcagaagac
tcaggttcaattcccagcacccatacggcggctcacaattggtctgcatc
tcgagtccacaggatccaatgccttcttctagtctccacaggcaccaggc
ttgcaagtggtcaccagacatacatgcagaaaaaacatccataaacataa
aaatgtttacattcttaatgtacagtttgcaattacaattaaacataact
tctgcaggaaaattaaaaccacttcagaaaaaaactagctgtctccaaca
gaatgggaaaggcatagtggaagagaagagcagcaggggagggcaaggca
gtgcagacctacagaaaagtaattgctttccccatcctgtgaggacttcc
aaatagacattttgaaagtgctagctttcatctgctaagtcactaaaaca
ccctgaattatttagcagcagtttaattaacctttcttcacttttttcta
gatagttaaatgtttgttttagaaaataccaagaaaaatatagtcataat
ttagtaaggcaccttaaggaataaaatatatatcctgttttatgatgatt
ctttacatagtgaataatacaggtatttgaaactatgcttaagatttatt
tttattttattatgtgcatgagtgttttgaaagcatgttaaatgcaccgc
acgcacgcagcagggcacgcagcgcccagaagaaagcaaccagatccctt
gaaactggcgtttctaggagtgagaaacccaaggtccttacaagatcaga
gcagcaaatgctcttagcccctacccaagactactccatgcactgaacta
tctcagagccttgcatcactatctgattaattcataaaagaaagaatagg
tggggccacacctcagttccagcacctggagctgagcaggagactgctgg
gcgtcagctactggatacacagcagaaatctcttttggaaaaaatccgac
catctatctaacccatatgcac
gaattcagaattttatttatttgaaaatcagaactttaattttcagtttt
tttgtttgttttttttaaagaccagatcttgctcaagatggcttcaaatt
cacagcaatccttttacctctgcctctcaagtgctgggattacagatgtg
cagtatgtgagcgtgttggagaagggaaagagggtctctcactagctgac
tcactgcttagcctagatcaacttcaaaatcttgacgaccttcccgtcag
cctctcagttgctgtaattgtaggagacagaattttttttttacatttaa
aatttttttctgtgtatgagttttacacacatacacacacacacacacac
acacacacacacatgtagtcgcatcttctacagaatcaagtgatcctaac
ttctaagccctctctccagccctgtgtttagttttgagagagtgtttctg
gtagttgaggctgactttgaacttgatatttagctaaggatggtcttcag
ctcctaatccaacccctccatccatagtgctggaagtccatgagtgtatc
tccccaataacaggagcgaatttccatttcagaagtaaaacttggggctg
gccactaggaattagaccatgctccagtgagtatatggagtttttctttt
cttttttggggcgttggtggtggtggtggtgatcacagaaggtggggagc
aagcatgggaatactgggaggtgagcgcgatggattggggtgcatgattt
gagattccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98975234_98976419
seq2: B6Ng01-255I22.b_43_1214 (reverse)

seq1  GTGCATTATGGGTTAGATAGATGGTTTTGGTTTTTTTCAAAAGGAGA-TT  49
      ||||| ||||||||||||||||||  | || ||||||| ||| |||| ||
seq2  GTGCA-TATGGGTTAGATAGATGG--TCGGATTTTTTCCAAAAGAGATTT  47

seq1  CTGCTGTGTATCCCAGGTTAGCCTTGGACGCCCAGCAGTCTTCTTGCTTC  99
      ||||||||||| ||||  ||||    |||||||||||||| || ||| ||
seq2  CTGCTGTGTAT-CCAG--TAGC---TGACGCCCAGCAGTC-TCCTGC-TC  89

seq1  AGCCTCCAAGTGCTGGGACTGAGGTGTGCCCCCAACCTTTCTTTCCTTTT  149
      || ||||| ||||||| ||||||||||| ||||| |  |||||| |||||
seq2  AG-CTCCAGGTGCTGGAACTGAGGTGTGGCCCCACCTATTCTTT-CTTTT  137

seq1  ATGAATTAATCAGAATAGTGATGCAAAGGCTCCTGAGATAGTTCAGTGCA  199
      ||||||||||||| |||||||||| |||||| ||||||||||||||||||
seq2  ATGAATTAATCAG-ATAGTGATGC-AAGGCT-CTGAGATAGTTCAGTGCA  184

seq1  TGGAGTAGTCTTGGGTAGGGGCTAAGAGCATTTGCTGCTCTGATCTTGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGTCTTGGGTAGGGGCTAAGAGCATTTGCTGCTCTGATCTTGTA  234

seq1  AGGACC-TGGGTTTCTCACTCCTAG-AACGCCAGTTTCAAGGGATCTGGT  297
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGACCTTGGGTTTCTCACTCCTAGAAACGCCAGTTTCAAGGGATCTGGT  284

seq1  TGCTTTCTTCTGGGCGCTGCGTGCCCTGCCTGCGTGCGTGCGGTGCATTT  347
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCTTTCTTCTGGGCGCTGCGTGCCCTG-CTGCGTGCGTGCGGTGCATTT  333

seq1  AACATGCTTTCAAAACACTCATGCACATAATAAAATAAAAATAAATCTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTTTCAAAACACTCATGCACATAATAAAATAAAAATAAATCTTA  383

seq1  AGCATAGTTTCAAATACCTGTATTATTCACTATGTAAAGAATCATCATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTTCAAATACCTGTATTATTCACTATGTAAAGAATCATCATAA  433

seq1  AACAGGATATATATTTTATTCCTTAAGGTGCCTTACTAAATTATGACTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATATATATTTTATTCCTTAAGGTGCCTTACTAAATTATGACTAT  483

seq1  ATTTTTCTTGGTATTTTCTAAAACAAACATTTAACTATCTAGAAAAAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTGGTATTTTCTAAAACAAACATTTAACTATCTAGAAAAAAGT  533

seq1  GAAGAAAGGTTAATTAAACTGCTGCTAAATAATTCAGGGTGTTTTAGTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGTTAATTAAACTGCTGCTAAATAATTCAGGGTGTTTTAGTGA  583

seq1  CTTAGCAGATGAAAGCTAGCACTTTCAAAATGTCTATTTGGAAGTCCTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGATGAAAGCTAGCACTTTCAAAATGTCTATTTGGAAGTCCTCA  633

seq1  CAGGATGGGGAAAGCAATTACTTTTCTGTAGGTCTGCACTGCCTTGCCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGGGAAAGCAATTACTTTTCTGTAGGTCTGCACTGCCTTGCCCT  683

seq1  CCCCTGCTGCTCTTCTCTTCCACTATGCCTTTCCCATTCTGTTGGAGACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTGCTCTTCTCTTCCACTATGCCTTTCCCATTCTGTTGGAGACA  733

seq1  GCTAGTTTTTTTCTGAAGTGGTTTTAATTTTCCTGCAGAAGTTATGTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTTTTCTGAAGTGGTTTTAATTTTCCTGCAGAAGTTATGTTTA  783

seq1  ATTGTAATTGCAAACTGTACATTAAGAATGTAAACATTTTTATGTTTATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTGCAAACTGTACATTAAGAATGTAAACATTTTTATGTTTATG  833

seq1  GATGTTTTTTCTGCATGTATGTCTGGTGACCACTTGCAAGCCTGGTGCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTTCTGCATGTATGTCTGGTGACCACTTGCAAGCCTGGTGCCT  883

seq1  GTGGAGACTAGAAGAAGGCATTGGATCCTGTGGACTCGAGATGCAGACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACTAGAAGAAGGCATTGGATCCTGTGGACTCGAGATGCAGACCA  933

seq1  ATTGTGAGCCGCCGTATGGGTGCTGGGAATTGAACCTGAGTCTTCTGCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGCCGCCGTATGGGTGCTGGGAATTGAACCTGAGTCTTCTGCAA  983

seq1  GAGCAGCAAGTGTTCTTGTCTTAGTTAGGGTGTCTGTTGCTGGGAAGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAAGTGTTCTTGTCTTAGTTAGGGTGTCTGTTGCTGGGAAGAGA  1033

seq1  CACCATGACAAGGTAACTCTTATAAAGGACAACGTTTGATTGAGGCGTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACAAGGTAACTCTTATAAAGGACAACGTTTGATTGAGGCGTAC  1083

seq1  ACAGATACGGAGGTTCAGTCCCTGGCGGGACTGTTCAGTTCATCAAGGTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACGGAGGTTCAGTCCCTGGCGGGACTGTTCAGTTCATCAAGGTG  1133

seq1  GGAAGCATGGCGGGGTCCTGGAAGAGGAGCTGAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGGCGGGGTCCTGGAAGAGGAGCTGAGAATTC  1172

seq1: chr15_98797212_98797971
seq2: B6Ng01-255I22.g_65_824

seq1  GAATTCAGAATTTTATTTATTTGAAAATCAGAACTTTAATTTTCAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTTTATTTATTTGAAAATCAGAACTTTAATTTTCAGTTTT  50

seq1  TTTGTTTGTTTTTTTTAAAGACCAGATCTTGCTCAAGATGGCTTCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTTTTAAAGACCAGATCTTGCTCAAGATGGCTTCAAATT  100

seq1  CACAGCAATCCTTTTACCTCTGCCTCTCAAGTGCTGGGATTACAGATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATCCTTTTACCTCTGCCTCTCAAGTGCTGGGATTACAGATGTG  150

seq1  CAGTATGTGAGCGTGTTGGAGAAGGGAAAGAGGGTCTCTCACTAGCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTGAGCGTGTTGGAGAAGGGAAAGAGGGTCTCTCACTAGCTGAC  200

seq1  TCACTGCTTAGCCTAGATCAACTTCAAAATCTTGACGACCTTCCCGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTTAGCCTAGATCAACTTCAAAATCTTGACGACCTTCCCGTCAG  250

seq1  CCTCTCAGTTGCTGTAATTGTAGGAGACAGAATTTTTTTTTTACATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTTGCTGTAATTGTAGGAGACAGAATTTTTTTTTTACATTTAA  300

seq1  AATTTTTTTCTGTGTATGAGTTTTACACACATACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCTGTGTATGAGTTTTACACACATACACACACACACACACAC  350

seq1  ACACACACACACATGTAGTCGCATCTTCTACAGAATCAAGTGATCCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATGTAGTCGCATCTTCTACAGAATCAAGTGATCCTAAC  400

seq1  TTCTAAGCCCTCTCTCCAGCCCTGTGTTTAGTTTTGAGAGAGTGTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCCCTCTCTCCAGCCCTGTGTTTAGTTTTGAGAGAGTGTTTCTG  450

seq1  GTAGTTGAGGCTGACTTTGAACTTGATATTTAGCTAAGGATGGTCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGAGGCTGACTTTGAACTTGATATTTAGCTAAGGATGGTCTTCAG  500

seq1  CTCCTAATCCAACCCCTCCATCCATAGTGCTGGAAGTCCATGAGTGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATCCAACCCCTCCATCCATAGTGCTGGAAGTCCATGAGTGTATC  550

seq1  TCCCCAATAACAGGAGCGAATTTCCATTTCAGAAGTAAAACTTGGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAATAACAGGAGCGAATTTCCATTTCAGAAGTAAAACTTGGGGCTG  600

seq1  GCCACTAGGAATTAGACCATGCTCCAGTGAGTATATGGAGTTTTTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAGGAATTAGACCATGCTCCAGTGAGTATATGGAGTTTTTCTTTT  650

seq1  CTTTTTTGGGGCGTTGGTGGTGGTGGTGGTGATCACAGAAGGTGGGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGGGGCGTTGGTGGTGGTGGTGGTGATCACAGAAGGTGGGGAGC  700

seq1  AAGCATGGGAAAACTGGGAGGTGAGCGCGATGGATTGGGGTGCATGATTT  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGGAATACTGGGAGGTGAGCGCGATGGATTGGGGTGCATGATTT  750

seq1  GAGATTCCCA  760
      ||||||||||
seq2  GAGATTCCCA  760