BAC Information

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BAC

Clone NameB6Ng01-256A16
Chromosome15 (Build37)
Map Location 71,893,993 - 72,052,755
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256A16.bB6Ng01-256A16.g
ACCGA062100GA062101
length1,1781,155
definitionB6Ng01-256A16.b B6Ng01-256A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,051,579 - 72,052,755)(71,893,993 - 71,895,154)
sequence
gaattctgtgaactaggaaaaaaacaaaaaaaaacaataaacaaacaaac
aaacaaaacaaaacataaaacaaccagagtgaagagacaagttacaaagt
gaaaaaggatttgtcaattatacaactgatatctgcccccttcccactca
ccgacctcatcaaatccaattggtgctgcccatgaacacgtagatgtgtg
gtcttcaactggggcttaagaaatactgcccccagcctccatcagccatc
acttgccaatagctccttatctagggggtaggacctgctaagtccaaagg
aaactaaagcagtgtgctgaggagatgctcacattcccacgtccactgtt
gtgttgtccacactagccaaagagagtcaacccaagtgctcatcaacgga
gaaacaacaggcagcagctgacacaccctggagtcctctccaaccacaaa
atatgtgtatgaaatgctttccatggaaggaactggagatcgttgtcaaa
tgagatcaggcggacatgaaaagacaaagttccatctgtcactcacacag
acacttgaaaatgttcattgagactccgacaagaactttagagaagttag
aatacaagagtggctatcaggggttgtggagaggacagagagaacaccct
gaagaggccaatcaacagatgccatgttagttagttgttctgtgtgctac
tgcatggtaaggaaaccacccaagtgcaattatgtactatatatctacta
tatccatcactggagattgcacattataaagatacaaattcatgagaata
ttttcttttacttagaattacatcagacagggggatctatttccaggcac
tctgccttgtcgttcccatgttttctcttcacggggtcctgtgagaggtg
cagctagcctgctctgttactaggacaaataaggagactccatcttgact
attcatgggttctgcagcacaaacaaggcacctcaccaacttgcatgggc
ttgtgtcttctcatccaaacacaaacagagacacacgtgagtctcaggtt
ggcttaggcatcctgtattttctctgtcttagtccatgttccatccaatc
ccacttagcttgtatcttacttctcctccacctctaaccatgtcaaggag
accagttctggttacttgacccatactt

gaattccatatgtaacgtttttgtttgggaaatgatgctttgtgaacgcc
aatatgtagattggattttgtggagactcaggcctcttgcaggatcctgt
tacccataaggattagcatgcttaatagttctctccacaacaggagatag
cactttttttcttgttgtttgacaccacctttcccccaaggacattcaaa
cagtaatgtattctagaacagtccttccctggattagacacacattgaaa
aaccaaacactctcttccccgtagagaattacagtgtccactggggaaga
aaatcctcttttccctacttttctatttttttatgtgttttctagtccaa
aaataatttatattcaaaactgttgaaatacatctgataacagaatggct
tattggcagggtatttgctgacattttgtgagctttggttgttttagaat
aaatttatagaataaatcataaatcattggaatgatgtcactatcctagt
gcgaatgggacttggagctgagagatggtttgtctgaagctaacaagtaa
atttcatccctggaaatacaaatccccatctggctggctccaaagtcctg
tgccctagataaacctattttgttggccacatagatttgggtttgtaaat
gagtttggctgtttaagctgagttttccgttcttgctgtttgaaggattg
tatcttgtatatcagcaaaagaaactaaacttaacgtttgggtctccagg
agggatgtgcaaaatgctgatcctttcattgcttcaaattcttgccagga
ctggcaaggcacaaaacctctcaatgaaggtaaagaaatagagaaaacat
agaccttgtctgagcatctaggtgccatgttcaggcagggtgggatgcac
agagacacaccagcatgtgtgagtcacatgttgtcactggggcagggctc
atgttaacatttttgtactgctgtctctttgatgaacccctttgcttctg
aagtctcagctgcttgttcttctccctttgttcttgcagccattttagga
attttggctgcagcaagcccattgagccatccagctgtttttattgtgga
agcttggctatgcctttaacttgagattaatgttatggttttctccaaat
gtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_72051579_72052755
seq2: B6Ng01-256A16.b_46_1223 (reverse)

seq1  AAGTA--GGTCAAGTAA-CAGAAACTGTTTCCTGGACATTGTTAGAGGT-  46
      |||||  |||||||||| |||||   || |||| ||||| ||||||||| 
seq2  AAGTATGGGTCAAGTAACCAGAACTGGTCTCCTTGACATGGTTAGAGGTG  50

seq1  GAGGAGAAGT-AGATACAAGGTTAGTGGGAATTGGATGGAACATGGGACT  95
      |||||||||| ||||||||| | |||||| |||||||||||||| |||||
seq2  GAGGAGAAGTAAGATACAAGCTAAGTGGG-ATTGGATGGAACAT-GGACT  98

seq1  AAGAACAGAG-AAATACAGGATGCCTAAAGCCAAACTGAAGACTCACGTT  144
      ||| |||||| ||||||||||||||| ||||||| ||| ||||||||| |
seq2  AAG-ACAGAGAAAATACAGGATGCCT-AAGCCAACCTG-AGACTCACG-T  144

seq1  GTGTCTCTGTTTGTGTTTGGATGAGAAGACACAAGCCCATGCAAGTTGGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGTCTCTGTTTGTGTTTGGATGAGAAGACACAAGCCCATGCAAGTT-GG  193

seq1  TGAGGTGCCTTGTTTGTGCTGCAGAA-CCATGAATAGTCAAGATGGAGTC  243
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAGGTGCCTTGTTTGTGCTGCAGAACCCATGAATAGTCAAGATGGAGTC  243

seq1  TCCTTATTTGTCCTAGTAACAGAGCAGGCTAGCTGCACCTCTCACAGGAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTTGTCCTAGTAACAGAGCAGGCTAGCTGCACCTCTCACAGGAC  293

seq1  CCCGTGAAGAGAAAACATGGGAACGACAAGGCAGAGTGCCTGGAAATAGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGAAGAGAAAACATGGGAACGACAAGGCAGAGTGCCTGGAAATAGA  343

seq1  T-CCCCTGTCTGATGTAATTCTAAGTAAAAGAAAATATTCTCATGAATTT  392
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGTCTGATGTAATTCTAAGTAAAAGAAAATATTCTCATGAATTT  393

seq1  GTATCTTTATAATGTGCAATCTCCAGTGATGGATATAGTAGATATATAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTATAATGTGCAATCTCCAGTGATGGATATAGTAGATATATAGT  443

seq1  ACATAATTGCACTTGGGTGGTTTCCTTACCATGCAGTAGCACACAGAACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTGCACTTGGGTGGTTTCCTTACCATGCAGTAGCACACAGAACA  493

seq1  ACTAACTAACATGGCATCTGTTGATTGGCCTCTTCAGGGTGTTCTCTCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAACATGGCATCTGTTGATTGGCCTCTTCAGGGTGTTCTCTCTG  543

seq1  TCCTCTCCACAACCCCTGATAGCCACTCTTGTATTCTAACTTCTCTAAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCACAACCCCTGATAGCCACTCTTGTATTCTAACTTCTCTAAAG  593

seq1  TTCTTGTCGGAGTCTCAATGAACATTTTCAAGTGTCTGTGTGAGTGACAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCGGAGTCTCAATGAACATTTTCAAGTGTCTGTGTGAGTGACAG  643

seq1  ATGGAACTTTGTCTTTTCATGTCCGCCTGATCTCATTTGACAACGATCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTTTGTCTTTTCATGTCCGCCTGATCTCATTTGACAACGATCTC  693

seq1  CAGTTCCTTCCATGGAAAGCATTTCATACACATATTTTGTGGTTGGAGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTTCCATGGAAAGCATTTCATACACATATTTTGTGGTTGGAGAG  743

seq1  GACTCCAGGGTGTGTCAGCTGCTGCCTGTTGTTTCTCCGTTGATGAGCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGGGTGTGTCAGCTGCTGCCTGTTGTTTCTCCGTTGATGAGCAC  793

seq1  TTGGGTTGACTCTCTTTGGCTAGTGTGGACAACACAACAGTGGACGTGGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGACTCTCTTTGGCTAGTGTGGACAACACAACAGTGGACGTGGG  843

seq1  AATGTGAGCATCTCCTCAGCACACTGCTTTAGTTTCCTTTGGACTTAGCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGCATCTCCTCAGCACACTGCTTTAGTTTCCTTTGGACTTAGCA  893

seq1  GGTCCTACCCCCTAGATAAGGAGCTATTGGCAAGTGATGGCTGATGGAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTACCCCCTAGATAAGGAGCTATTGGCAAGTGATGGCTGATGGAGG  943

seq1  CTGGGGGCAGTATTTCTTAAGCCCCAGTTGAAGACCACACATCTACGTGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCAGTATTTCTTAAGCCCCAGTTGAAGACCACACATCTACGTGT  993

seq1  TCATGGGCAGCACCAATTGGATTTGATGAGGTCGGTGAGTGGGAAGGGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCAGCACCAATTGGATTTGATGAGGTCGGTGAGTGGGAAGGGGG  1043

seq1  CAGATATCAGTTGTATAATTGACAAATCCTTTTTCACTTTGTAACTTGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCAGTTGTATAATTGACAAATCCTTTTTCACTTTGTAACTTGTC  1093

seq1  TCTTCACTCTGGTTGTTTTATGTTTTGTTTTGTTTGTTTGTTTGTTTATT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCTGGTTGTTTTATGTTTTGTTTTGTTTGTTTGTTTGTTTATT  1143

seq1  GTTTTTTTTTGTTTTTTTCCTAGTTCACAGAATTC  1177
      |||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTGTTTTTTTCCTAGTTCACAGAATTC  1178


seq1: chr15_71893993_71895154
seq2: B6Ng01-256A16.g_64_1218

seq1  GAATTCCATATGTAACGTTTTTGTTTGGGAAATGATGCTTTGTGAACGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTAACGTTTTTGTTTGGGAAATGATGCTTTGTGAACGCC  50

seq1  AATATGTAGATTGGATTTTGTGGAGACTCAGGCCTCTTGCAGGATCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAGATTGGATTTTGTGGAGACTCAGGCCTCTTGCAGGATCCTGT  100

seq1  TACCCATAAGGATTAGCATGCTTAATAGTTCTCTCCACAACAGGAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATAAGGATTAGCATGCTTAATAGTTCTCTCCACAACAGGAGATAG  150

seq1  CACTTTTTTTCTTGTTGTTTGACACCACCTTTCCCCCAAGGACATTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTTCTTGTTGTTTGACACCACCTTTCCCCCAAGGACATTCAAA  200

seq1  CAGTAATGTATTCTAGAACAGTCCTTCCCTGGATTAGACACACATTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGTATTCTAGAACAGTCCTTCCCTGGATTAGACACACATTGAAA  250

seq1  AACCAAACACTCTCTTCCCCGTAGAGAATTACAGTGTCCACTGGGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACACTCTCTTCCCCGTAGAGAATTACAGTGTCCACTGGGGAAGA  300

seq1  AAATCCTCTTTTCCCTACTTTTCTATTTTTTTATGTGTTTTCTAGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCTTTTCCCTACTTTTCTATTTTTTTATGTGTTTTCTAGTCCAA  350

seq1  AAATAATTTATATTCAAAACTGTTGAAATACATCTGATAACAGAATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTATATTCAAAACTGTTGAAATACATCTGATAACAGAATGGCT  400

seq1  TATTGGCAGGGTATTTGCTGACATTTTGTGAGCTTTGGTTGTTTTAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCAGGGTATTTGCTGACATTTTGTGAGCTTTGGTTGTTTTAGAAT  450

seq1  AAATTTATAGAATAAATCATAAATCATTGGAATGATGTCACTATCCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAGAATAAATCATAAATCATTGGAATGATGTCACTATCCTAGT  500

seq1  GCGAATGGGACTTGGAGCTGAGAGATGGTTTGTCTGAAGCTAACAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATGGGACTTGGAGCTGAGAGATGGTTTGTCTGAAGCTAACAAGTAA  550

seq1  ATTTCATCCCTGGAAATACAAATCCCCATCTGGCTGGCTCCAAAGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCCCTGGAAATACAAATCCCCATCTGGCTGGCTCCAAAGTCCTG  600

seq1  TGCCCTAGATAAACCTATTTTGTTGGCCACATAGATTTGGGTTTGTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAGATAAACCTATTTTGTTGGCCACATAGATTTGGGTTTGTAAAT  650

seq1  GAGTTTGGCTGTTTAAGCTGAGTTTTCCGTTCTTGCTGTTTGAAGGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGCTGTTTAAGCTGAGTTTTCCGTTCTTGCTGTTTGAAGGATTG  700

seq1  TATCTTGTATATCAGCAAAAGAAACTAAACTTAACGTTTGGGTCTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTATATCAGCAAAAGAAACTAAACTTAACGTTTGGGTCTCCAGG  750

seq1  AGGGATGTGCAAAATGCTGATCCTTTCATTGCTTCAAATTCTTGCCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGCAAAATGCTGATCCTTTCATTGCTTCAAATTCTTGCCAGGA  800

seq1  CTGGCAAGGCACAAAACCTCTCAATGAAGGTAAAGAAATAGAGAAAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGGCACAAAACCTCTCAATGAAGGTAAAGAAATAGAGAAAACAT  850

seq1  AGACCTTGTCTGAGCATCTAGGTGCCATGTTCAGGCAGGGTGGGATGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTCTGAGCATCTAGGTGCCATGTTCAGGCAGGGTGGGATGCAC  900

seq1  AGAGACACACCAGCATGTGTGAGTCACATGTTGTCACTGGGGCAGGGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACACCAGCATGTGTGAGTCACATGTTGTCACTGGGGCAGGGCTC  950

seq1  ATGTTAACATTTTTTGTACTGCTGTCTCTTTGATGAACCCCTTTTGCTTC  1000
      ||||||||| ||||||||||||||||||||||||||||||| ||||||| 
seq2  ATGTTAACA-TTTTTGTACTGCTGTCTCTTTGATGAACCCC-TTTGCTT-  997

seq1  CTGAAGGTCTCAGCTGCCTTGTTCTTCTCCCTTTTGTTCTTTGCAGCCCA  1050
      ||||| |||||||||| |||||||||||||| ||||||| |||||| |||
seq2  CTGAA-GTCTCAGCTG-CTTGTTCTTCTCCC-TTTGTTC-TTGCAG-CCA  1042

seq1  TTTAAGAAATTTTGCCTGCAGCAAGGCCATGGAGGCATTCAGCTG-TTTT  1099
      ||| || ||||||| |||||||||| |||| ||| ||| |||||| ||||
seq2  TTTTAGGAATTTTGGCTGCAGCAAGCCCATTGAGCCATCCAGCTGTTTTT  1092

seq1  ATTGT-GAAGCTTGGTTATTGCTTTAACTTTTAGATTAATGTTATGGTTT  1148
      ||||| ||||||||| |||  ||||||| || ||||||||||||||||||
seq2  ATTGTGGAAGCTTGGCTATGCCTTTAAC-TTGAGATTAATGTTATGGTTT  1141

seq1  TCCTCAAATGTGTT  1162
      ||  |||||||| |
seq2  TCTCCAAATGTGGT  1155


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