BAC Information

Click to search

BAC

Clone NameB6Ng01-258D14
Chromosome15 (Build37)
Map Location 77,105,427 - 77,106,546
singlet/doubletsinglet
Overlap geneRbm9
Upstream geneSpatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6
Downstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258D14.bB6Ng01-258D14.g
ACCGA063717GA063718
length1,1301,185
definitionB6Ng01-258D14.b B6Ng01-258D14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaacctaagatccaagtgaaaagagacaaaactgaggagttgt
ggtctaggaaaggctggaaaccctcagggcagaaggcaggtggatatatg
ctctgagctgcatttgcaaggagacaaccaaagagctgtgtaagcgaaga
gcaacgactgacaatgtgaacatgctgggtgtttctcagcaacactggag
gcatgatggctgctggtgctggctgtgcgtatctgaactcaagactaggc
agacttaatggaaggactctgtaaccttttcagaaatgaagtagctccag
cctgacaaagccaggccttaaaataggtgtgaggagagactacggtcagt
aagaagttaaaccttcccagaggcactggagacttctaagataatggtcc
aagtccgagagctacaagttgtgttttaagtggggaaggggttggtaaga
caaacaagtgacatcagagtgtgagacacctgggactctgccttgaagta
gcgggctcagggatgtttagtggaaaagaagggggagggggagaacctca
cctcccttgatagaagcacccactgcaaggacaggaccctctgaaagaaa
ctgggtttagttaaagaggagtgggactgagtcagtgaagagactcccac
taagcaacaggaaagtggacagagccacggaagattagaaaagcctgaga
agggagcctgggccaggcctgctgtaagctggcaggagcccacagagcta
tgccgtgggccactacaaggtccttaaggattgtcctatgtggtttttcc
cctctatttggccaaatcaaacacatggagtcacttatggcctaataaca
cttaggcttctgacacctccagcagcaatgagtaaccagtaaatatcagt
aaacaggctttattactttcatgactcaagagcttttggtgcctttaatg
aataataaagtaattagtcaattgtttgcccaccctaacatatgcaggga
tccctctgtaccagctgcttgtacccgtcttcgttttattttcagaccta
agaagcacctggtaggagggagaaggctactgatgcctgagtctaagaac
ttgctctgccattcacaatttctttcagga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctctactat
gtttatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aagaatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
gaacccagatatagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtgacacatatgactaccagtacctggagctctgactctagctgca
tatgtatcaaagaatggctagtcgcatcacttgaaagaggaggccatgaa
acgcaaactttatatgccccagtacaggcaacgcagtcaaaaggggaatt
gagtggcttaggggaaagtgtgctccccggactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77105427_77106546
seq2: B6Ng01-258D14.b_41_1170

seq1  GAATTCAAAACCTAAGATCCAAGTGAAAAGAGACAAAACTGAGGAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCTAAGATCCAAGTGAAAAGAGACAAAACTGAGGAGTTGT  50

seq1  GGTCTAGGAAAGGCTGGAAACCCTCAGGGCAGAAGGCAGGTGGATATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGGAAAGGCTGGAAACCCTCAGGGCAGAAGGCAGGTGGATATATG  100

seq1  CTCTGAGCTGCATTTGCAAGGAGACAACCAAAGAGCTGTGTAAGCGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCTGCATTTGCAAGGAGACAACCAAAGAGCTGTGTAAGCGAAGA  150

seq1  GCAACGACTGACAATGTGAACATGCTGGGTGTTTCTCAGCAACACTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGACTGACAATGTGAACATGCTGGGTGTTTCTCAGCAACACTGGAG  200

seq1  GCATGATGGCTGCTGGTGCTGGCTGTGCGTATCTGAACTCAAGACTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATGGCTGCTGGTGCTGGCTGTGCGTATCTGAACTCAAGACTAGGC  250

seq1  AGACTTAATGGAAGGACTCTGTAACCTTTTCAGAAATGAAGTAGCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAATGGAAGGACTCTGTAACCTTTTCAGAAATGAAGTAGCTCCAG  300

seq1  CCTGACAAAGCCAGGCCTTAAAATAGGTGTGAGGAGAGACTACGGTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAAGCCAGGCCTTAAAATAGGTGTGAGGAGAGACTACGGTCAGT  350

seq1  AAGAAGTTAAACCTTCCCAGAGGCACTGGAGACTTCTAAGATAATGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTAAACCTTCCCAGAGGCACTGGAGACTTCTAAGATAATGGTCC  400

seq1  AAGTCCGAGAGCTACAAGTTGTGTTTTAAGTGGGGAAGGGGTTGGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCGAGAGCTACAAGTTGTGTTTTAAGTGGGGAAGGGGTTGGTAAGA  450

seq1  CAAACAAGTGACATCAGAGTGTGAGACACCTGGGACTCTGCCTTGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGTGACATCAGAGTGTGAGACACCTGGGACTCTGCCTTGAAGTA  500

seq1  GCGGGCTCAGGGATGTTTAGTGGAAAAGAAGGGGGAGGGGGAGAACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTCAGGGATGTTTAGTGGAAAAGAAGGGGGAGGGGGAGAACCTCA  550

seq1  CCTCCCTTGATAGAAGCACCCACTGCAAGGACAGGACCCTCTGAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTGATAGAAGCACCCACTGCAAGGACAGGACCCTCTGAAAGAAA  600

seq1  CTGGGTTTAGTTAAAGAGGAGTGGGACTGAGTCAGTGAAGAGACTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTAGTTAAAGAGGAGTGGGACTGAGTCAGTGAAGAGACTCCCAC  650

seq1  TAAGCAACAGGAAAGTGGACAGAGCCACGGAAGATTAGAAAAGCCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACAGGAAAGTGGACAGAGCCACGGAAGATTAGAAAAGCCTGAGA  700

seq1  AGGGAGCCTGGGCCAGGCCTGCTGTAAGCTGGCAGGAGCCCACAGAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCTGGGCCAGGCCTGCTGTAAGCTGGCAGGAGCCCACAGAGCTA  750

seq1  TGCCGTGGGCCACTACAAGGTCCTTAAGGATTGTCCTATGTGGTTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGGGCCACTACAAGGTCCTTAAGGATTGTCCTATGTGGTTTTTCC  800

seq1  CCTCTATTTGGCCAAATCAAACACATGGAGTCACTTATGGCCTAATAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTGGCCAAATCAAACACATGGAGTCACTTATGGCCTAATAACA  850

seq1  CTTAGGCTTCTGACACCTCCAGCAGCAATGAGTAACCAGTAAATATCAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTAGGCTTCTGACACCTCCAGCAGCAATGAGTAACCAGTAAATATCA-G  899

seq1  TAAACAGGCTTTATTAC-TTCATGACTCAAGAGC-TTTGGTGCCTTTAAT  948
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TAAACAGGCTTTATTACTTTCATGACTCAAGAGCTTTTGGTGCCTTTAAT  949

seq1  GAATAATAAAGTAAATTAGTCAA-TGTT--GCCAACCTAACAATATGCAG  995
      |||||||||||| |||||||||| ||||   ||| |||||| ||||||||
seq2  GAATAATAAAGT-AATTAGTCAATTGTTTGCCCACCCTAAC-ATATGCAG  997

seq1  GGAT-CCTCTGTACCACCTGC-TGTACCCGTC-TCCTTTAATTTTCAGAC  1042
      |||| ||||||||||| |||| |||||||||| || ||| ||||||||||
seq2  GGATCCCTCTGTACCAGCTGCTTGTACCCGTCTTCGTTTTATTTTCAGAC  1047

seq1  CTAAGAAGCA-CTGGAAGGAGGGAGAAGGC-ACTGA-GCCTGAAGTCAAG  1089
      |||||||||| |||| |||||||||||||| ||||| ||||| |||| | 
seq2  CTAAGAAGCACCTGGTAGGAGGGAGAAGGCTACTGATGCCTG-AGTCTAA  1096

seq1  GAACTTGC-CTGCCATCCACAATT--CTTCAGGA  1120
      |||||||| ||||||| |||||||   |||||||
seq2  GAACTTGCTCTGCCATTCACAATTTCTTTCAGGA  1130