BAC Information

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BAC

Clone NameB6Ng01-260F22
Chromosome15 (Build37)
Map Location 30,102,252 - 30,222,143
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260F22.bB6Ng01-260F22.g
ACCGA065310GA065311
length1,178485
definitionB6Ng01-260F22.b B6Ng01-260F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,220,980 - 30,222,143)(30,102,252 - 30,102,736)
sequence
gaattcttcaatgtacatagttcctggagatttctttcacatatctatta
atttattaacactctttaaagccaggcagcttcctacgactttttttctg
tcagataaatcattgaggtggttataaataaagcattataccttaaatcc
ctcagttcctaacccagaaagctaagtgccattgggtttcagaagaaatg
ttaggaaaactaattgatgctgatatttcagttctcctctaacactaaaa
gtgcgggagcaaggcagttacagaaagtctctcacactagacaatgaaaa
ggaaaactctgtatctattctaggaactcattttggacaaaaatccactg
acatcttttagagagagagagagagagagagagagagagagagggaatca
gatagaaggaaggaaaaaggaaaagaaaaggcaagtcctccttgggacac
ttttccttctgatttagctggttttacggtaacaatattttaatgttatt
atactaaatgatattctcctaatattcaaatagagtttcaggaagaaata
agatcattaagatgtccaaggaatactaagtgtgatgatattgatgttca
gattgtcagattcttgaattagttaggcaacaagtccacaggcataccta
tgagggactacagagcctctgagcatgcctgtaagggactatggtgagcc
cgtcaaactagggtggaaagacttactccaacagtattcaacaccatacc
ctaatttccattccaggactgcacagacccaaaccaacaatccagattgg
cagtgattcctcactctgtatcctgactgtggacgtgatgtgacctctgc
ttttacagtctcccgccaccttgactcacctgccatgctgggtggtaccc
ttaaactctgacaaagaatagagccttgctcactgacattccttttgtcc
agaatatttgttcacagcaacagacaagaataactaacttccacagaaag
tgacattacacaagtgaaaaaaccacaatctatttcctgcagaagctgga
cgtttacggctgtttgagatgttggtgaatgaaatcgattctcacggatc
cattcataaagaacttcttgggcctattcacacttggttagcagttattg
agacctcgcaattgggcagagaagaaca
cgtggcgaggcgccgcgctctctcggcggcactgggcatgctccgcaccc
ggggcaggtttcggtggtggggcggacgctcgctcgctcactagccaagc
gccggagccggccgccgcggctgagccggaggctgagctgcggcgcgcgg
cgggaggagcctcgctctcggcggcggcggcggcggcggcgacacaggtg
gcgcgggcggcgcgcagggcgcagctcgagagcgctcggcgccgggcgcc
agggcggcccaggctcgcgcccgcggcggcaaccggccgagcggagcggc
gggcgcggcggctcggtagcccggcccgagcccggggagccccgcgaaac
cctgagcatcccgcggcgcccgccgagtcgggcagggggcgctacgctcg
ccgcgctctgaggggcggccgggccgggcgcttgcactcacgtccggagc
tgcctctcgcctgccgcgctcgacccctgctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30220980_30222143
seq2: B6Ng01-260F22.b_44_1221 (reverse)

seq1  TGTTCTTCTCT-CCCATTTGCGA-GTCTCAATAACCTGCCTACTA---GT  45
      ||||||||||| |||| |||||| |||||||||| ||||  || |   ||
seq2  TGTTCTTCTCTGCCCAATTGCGAGGTCTCAATAA-CTGCTAACCAAGTGT  49

seq1  GAATAG--CCCAGAGGT--CTTATGCATGGAT-CGTGAG-ATCGATTCCA  89
      ||||||  || ||| ||   ||||| |||||| |||||| ||||||| ||
seq2  GAATAGGCCCAAGAAGTTCTTTATGAATGGATCCGTGAGAATCGATTTCA  99

seq1  TCCA-CAACATCTCAAACAGCCGTAAACGTCCAGC-TCTGCAGGAAATAG  137
      | || |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCACCAACATCTCAAACAGCCGTAAACGTCCAGCTTCTGCAGGAAATAG  149

seq1  ATTGTGG-TTTGTCACTTGTGTAATGTCACTTTCTGTGGAAGTTAGTTA-  185
      ||||||| ||| ||||||||||||||||||||||||||||||||||||| 
seq2  ATTGTGGTTTTTTCACTTGTGTAATGTCACTTTCTGTGGAAGTTAGTTAT  199

seq1  TCTTGTCTGTTGCTGTGAACAAATATTCTGGACAAAAGGAATGTCAGTGA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTGTTGCTGTGAACAAATATTCTGGACAAAAGGAATGTCAGTGA  249

seq1  GCAAGGCTCTATTCTTTGTCAGAGTTTAAGGGTACCACCCAGCATGGCAG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTCTATTCTTTGTCAGAGTTTAAGGGTACCACCCAGCATGGCAG  299

seq1  GTGAGTCAAGGTGGCGGGAGACTGTAAAAGCAGAGGTCACATCACGTCCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCAAGGTGGCGGGAGACTGTAAAAGCAGAGGTCACATCACGTCCA  349

seq1  CAGTCAGGATACAGAGTGAGGAATCACTGCCAATCTGGATTGTTGGTTTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGATACAGAGTGAGGAATCACTGCCAATCTGGATTGTTGGTTTG  399

seq1  GGTCTGTGCAGTCCTGGAATGGAAATTAGGGTATGGTGTTGAATACTGTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGCAGTCCTGGAATGGAAATTAGGGTATGGTGTTGAATACTGTT  449

seq1  GGAGTAAGTCTTTCCACCCTAGTTTGACGGGCTCACCATAGTCCCTTACA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGTCTTTCCACCCTAGTTTGACGGGCTCACCATAGTCCCTTACA  499

seq1  GGCATGCTCAGAGGCTCTGTAGTCCCTCATAGGTATGCCTGTGGACTTGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCTCAGAGGCTCTGTAGTCCCTCATAGGTATGCCTGTGGACTTGT  549

seq1  TGCCTAACTAATTCAAGAATCTGACAATCTGAACATCAATATCATCACAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACTAATTCAAGAATCTGACAATCTGAACATCAATATCATCACAC  599

seq1  TTAGTATTCCTTGGACATCTTAATGATCTTATTTCTTCCTGAAACTCTAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTCCTTGGACATCTTAATGATCTTATTTCTTCCTGAAACTCTAT  649

seq1  TTGAATATTAGGAGAATATCATTTAGTATAATAACATTAAAATATTGTTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTAGGAGAATATCATTTAGTATAATAACATTAAAATATTGTTA  699

seq1  CCGTAAAACCAGCTAAATCAGAAGGAAAAGTGTCCCAAGGAGGACTTGCC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAAACCAGCTAAATCAGAAGGAAAAGTGTCCCAAGGAGGACTTGCC  749

seq1  TTTTCTTTTCCTTTTTCCTTCCTTCTATCTGATTCCCTCTCTCTCTCTCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCCTTTTTCCTTCCTTCTATCTGATTCCCTCTCTCTCTCTCT  799

seq1  CTCTCTCTCTCTCTCTCTCTAAAAGATGTCAGTGGATTTTTGTCCAAAAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTAAAAGATGTCAGTGGATTTTTGTCCAAAAT  849

seq1  GAGTTCCTAGAATAGATACAGAGTTTTCCTTTTCATTGTCTAGTGTGAGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTAGAATAGATACAGAGTTTTCCTTTTCATTGTCTAGTGTGAGA  899

seq1  GACTTTCTGTAACTGCCTTGCTCCCGCACTTTTAGTGTTAGAGGAGAACT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGTAACTGCCTTGCTCCCGCACTTTTAGTGTTAGAGGAGAACT  949

seq1  GAAATATCAGCATCAATTAGTTTTCCTAACATTTCTTCTGAAACCCAATG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCAGCATCAATTAGTTTTCCTAACATTTCTTCTGAAACCCAATG  999

seq1  GCACTTAGCTTTCTGGGTTAGGAACTGAGGGATTTAAGGTATAATGCTTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGCTTTCTGGGTTAGGAACTGAGGGATTTAAGGTATAATGCTTT  1049

seq1  ATTTATAACCACCTCAATGATTTATCTGACAGAAAAAAAGTCGTAGGAAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACCACCTCAATGATTTATCTGACAGAAAAAAAGTCGTAGGAAG  1099

seq1  CTGCCTGGCTTTAAAGAGTGTTAATAAATTAATAGATATGTGAAAGAAAT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCTTTAAAGAGTGTTAATAAATTAATAGATATGTGAAAGAAAT  1149

seq1  CTCCAGGAACTATGTACATTGAAGAATTC  1164
      |||||||||||||||||||||||||||||
seq2  CTCCAGGAACTATGTACATTGAAGAATTC  1178

seq1: chr15_30102252_30102736
seq2: B6Ng01-260F22.g_73_557

seq1  CGTGGCGAGGCGCCGCGCTCTCTCGGCGGCACTGGGCATGCTCCGCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCGAGGCGCCGCGCTCTCTCGGCGGCACTGGGCATGCTCCGCACCC  50

seq1  GGGGCAGGTTTCGGTGGTGGGGCGGACGCTCGCTCGCTCACTAGCCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGTTTCGGTGGTGGGGCGGACGCTCGCTCGCTCACTAGCCAAGC  100

seq1  GCCGGAGCCGGCCGCCGCGGCTGAGCCGGAGGCTGAGCTGCGGCGCGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAGCCGGCCGCCGCGGCTGAGCCGGAGGCTGAGCTGCGGCGCGCGG  150

seq1  CGGGAGGAGCCTCGCTCTCGGCGGCGGCGGCGGCGGCGGCGACACAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGAGCCTCGCTCTCGGCGGCGGCGGCGGCGGCGGCGACACAGGTG  200

seq1  GCGCGGGCGGCGCGCAGGGCGCAGCTCGAGAGCGCTCGGCGCCGGGCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGGCGGCGCGCAGGGCGCAGCTCGAGAGCGCTCGGCGCCGGGCGCC  250

seq1  AGGGCGGCCCAGGCTCGCGCCCGCGGCGGCAACCGGCCGAGCGGAGCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGCCCAGGCTCGCGCCCGCGGCGGCAACCGGCCGAGCGGAGCGGC  300

seq1  GGGCGCGGCGGCTCGGTAGCCCGGCCCGAGCCCGGGGAGCCCCGCGGAAC  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGCGCGGCGGCTCGGTAGCCCGGCCCGAGCCCGGGGAGCCCCGCGAAAC  350

seq1  CCTGAGCATCCCGCGGCGCCCGCCGAGTCGGGCAGGGGGCGCTACGCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCATCCCGCGGCGCCCGCCGAGTCGGGCAGGGGGCGCTACGCTCG  400

seq1  CCGCGCTCGGAGGGGCGGCCGGGCCGGGCGCTGCGCACTCGCGTCGGGAG  450
      |||||||| |||||||||||||||||||||||  |||||| |||| ||||
seq2  CCGCGCTCTGAGGGGCGGCCGGGCCGGGCGCT-TGCACTCACGTCCGGAG  449

seq1  CCGCCTCTCGCCTGCCGCGCTCG-CCCCTGCTCCCC  485
      | ||||||||||||||||||||| ||||||||||||
seq2  CTGCCTCTCGCCTGCCGCGCTCGACCCCTGCTCCCC  485