BAC Information

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BAC

Clone NameB6Ng01-260J07
Chromosome15 (Build37)
Map Location 61,967,469 - 62,119,380
singlet/doubletdoublet
Overlap genePvt1, LOC100040584, H2afy3
Upstream geneLOC100040323, Myc
Downstream geneLOC100040430, Tsg101-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260J07.bB6Ng01-260J07.g
ACCGA065466GA065467
length1,2051,110
definitionB6Ng01-260J07.b B6Ng01-260J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,967,469 - 61,968,679)(62,118,253 - 62,119,380)
sequence
gaattcaaacaagtgacaatttccctagatgttgtgaacaaaccctcggg
ctacttcccatatataccccagggcctttgcgtatgctcaaccagtagca
gttttcttactgcacgacataggccaatctaccagcagagtttaagcaga
gagatgggtgttaggtgatagctggtgggtaagggacatccccttctgta
gactcttgggtcagtttagtgaggatcctttctcctcccataactgaact
gactggttctttgtcttttgctctaaccctggtgatatctgcttccctag
cctgtcttcaagaggaatctcatttgatcacttagcccagcatacctgtc
atgagtgatagttcttcctggggattgtctgcatcctgaccccagccttc
cccttgatcagaagaaggcattggatctcattacagatggctgtgagcca
ccatgtagttgctgggaattgaactcaggacctctgggctcttaatcgct
gagccatccctccagccctgcactgtcaacctcactggattaaaaaccat
tgtagagttaataaagcagggcttgaaagtgtctctgagggtgtttcaga
gaggaataattgggaggataaaacccacactgaagataggcagtaccatc
ctttagcctgtgggcctagactccatagaagccagccagcatattctctc
tgtgtgtctctctgtccttttctttcttcattggcatgagctgtgtgctt
cattacaatcttgccacaatggactgaccacaagcagaaaatagcatttt
tccctaatgttatcccaggtactatttcacggcaagaattaataacccct
ctaaatctccaaccgtgatgatctcaaggaagtcctgatctgctttccac
aagcaacactaaggcactctctgggtctagatagctgagctccaaacaag
gacagagggttgccatgcccctgaacacgggtcctctgctcagttttgag
attcaaccatggaatcatcaccaccatcccacccctacccctcccttcca
gtgcatgtggatgaaaggagataaccatcatttctactcagttcatcctg
tctaacttactccacccgccttctgccttgcgccctcctgagtctgcacg
gtgatcctgcatccctttgaaagggacaactgctgcctaatgcctgcctg
ctgtg

gaattctaaaaataggaggatctatttttattgtatttttgtgtacttcc
agttcccaatatctagcagaggactaatatattctaagtactcaaaaaag
aaatacagtttgaaagagacatgcttgagtagtacacccatgagcacaag
tgctagcagagagctggtgactgcatgcaggttcctgaaggcgaatcccg
cattctttccctctgctcccacattggaggaaacacatccgccaatggct
gtgaaacccagtccctagctcagagcccattctcatggcagtcataataa
aacaagcatttggatggatgagacaggaaatgaccaatagccacagctca
gaatgacacagctttagctggcagggggagggaggaaggtcctctggagg
gttgagtttaaggagccacaggaatgtgaagcaggaacatttttaatgat
ttttcaaatgcggtgatacagtgtgccttctagttattctctgctaaact
gaacagtcaccctacaaatttcaaccaccatttagtcagcatgatttctc
cttgcctccaagactcctctggggaaagtggtaagtcaaactcaacagat
gggagaattagaatgtctcatctctagagggaaacagagccttcaagtga
ctcataaatactctagatcctctgcccagaaaaaaaaaaaaaaaaaaaaa
aaaaaaagcctttccacaggatgtttttcatgaccttttgatacagctga
gtgactactgtgaataggtcctcgtaacaagtgggctcaagcaacgggat
gcattttgtagatcctagcatacagaaacgaaaacatctcatctaagcat
tcaagacacagttgcacacagactctgcctctgtattatgtctaatgtca
ttttcactgtctcctaagtagcttgctttacatataagcagacaaagtat
ttgcagccatcgctgttgagtaagtatgtgctcagctgttagtatcagct
cggggagaaatgcatgagtaaaagtatgagattaaggtctgtgcacggag
atgctggcttcaatctgaccctctctgcatgtgtgctgtgaatgccatac
gacagtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61967469_61968679
seq2: B6Ng01-260J07.b_46_1250

seq1  GAATTCAAACAAGTGACAATTTCCCTAGATGTTGTGAACAAACCCTCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAGTGACAATTTCCCTAGATGTTGTGAACAAACCCTCGGG  50

seq1  CTACTTCCCATATATACCCCAGGGCCTTTGCGTATGCTCAACCAGTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCCATATATACCCCAGGGCCTTTGCGTATGCTCAACCAGTAGCA  100

seq1  GTTTTCTTACTGCACGACATAGGCCAATCTACCAGCAGAGTTTAAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTACTGCACGACATAGGCCAATCTACCAGCAGAGTTTAAGCAGA  150

seq1  GAGATGGGTGTTAGGTGATAGCTGGTGGGTAAGGGACATCCCCTTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGTGTTAGGTGATAGCTGGTGGGTAAGGGACATCCCCTTCTGTA  200

seq1  GACTCTTGGGTCAGTTTAGTGAGGATCCTTTCTCCTCCCATAACTGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGGGTCAGTTTAGTGAGGATCCTTTCTCCTCCCATAACTGAACT  250

seq1  GACTGGTTCTTTGTCTTTTGCTCTAACCCTGGTGATATCTGCTTCCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTCTTTGTCTTTTGCTCTAACCCTGGTGATATCTGCTTCCCTAG  300

seq1  CCTGTCTTCAAGAGGAATCTCATTTGATCACTTAGCCCAGCATACCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCAAGAGGAATCTCATTTGATCACTTAGCCCAGCATACCTGTC  350

seq1  ATGAGTGATAGTTCTTCCTGGGGATTGTCTGCATCCTGACCCCAGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGATAGTTCTTCCTGGGGATTGTCTGCATCCTGACCCCAGCCTTC  400

seq1  CCCTTGATCAGAAGAAGGCATTGGATCTCATTACAGATGGCTGTGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGATCAGAAGAAGGCATTGGATCTCATTACAGATGGCTGTGAGCCA  450

seq1  CCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGGCTCTTAATCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGGCTCTTAATCGCT  500

seq1  GAGCCATCCCTCCAGCCCTGCACTGTCAACCTCACTGGATTAAAAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCCCTCCAGCCCTGCACTGTCAACCTCACTGGATTAAAAACCAT  550

seq1  TGTAGAGTTAATAAAGCAGGGCTTGAAAGTGTCTCTGAGGGTGTTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTTAATAAAGCAGGGCTTGAAAGTGTCTCTGAGGGTGTTTCAGA  600

seq1  GAGGAATAATTGGGAGGATAAAACCCACACTGAAGATAGGCAGTACCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAATTGGGAGGATAAAACCCACACTGAAGATAGGCAGTACCATC  650

seq1  CTTTAGCCTGTGGGCCTAGACTCCATAGAAGCCAGCCAGCATATTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCTGTGGGCCTAGACTCCATAGAAGCCAGCCAGCATATTCTCTC  700

seq1  TGTGTGTCTCTCTGTCCTTTTCTTTCTTCATTGGCATGAGCTGTGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTCTCTGTCCTTTTCTTTCTTCATTGGCATGAGCTGTGTGCTT  750

seq1  CATTACAATCTTGCCACAATGGACTGACCACAAGCAGAAAATAGCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAATCTTGCCACAATGGACTGACCACAAGCAGAAAATAGCATTTT  800

seq1  TCCCTAATGTTATCCCAGGTACTATTTCACGGCAAGAATTAATAACCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATGTTATCCCAGGTACTATTTCACGGCAAGAATTAATAACCCCT  850

seq1  CTAAATCTCCAACCGTGATGATCTCAAGGAAGTCCTGATCTGCTTTCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTCCAACCGTGATGATCTCAAGGAAGTCCTGATCTGCTTTCCAC  900

seq1  AAGCAACACTAAGGCACTCTCTGGGTCTAGATAGCTGAGCTCCAAACAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACACTAAGGCACTCTCTGGGTCTAGATAGCTGAGCTCCAAACAAG  950

seq1  GACAGAGGGTTGCCATGCCCCTGAACACGGGGTCCTCTGCTCAGTTTTGA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACAGAGGGTTGCCATGCCCCTGAACAC-GGGTCCTCTGCTCAGTTTTGA  999

seq1  GATTCAACCATGGAATCATCACCACCATCCCACCCCTACCCCTCCCTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAACCATGGAATCATCACCACCATCCCACCCCTACCCCTCCCTTCC  1049

seq1  AGTGCATGTGGATGAGAGGGAGATAACCAATCATTTCCTACCTCCAGTTC  1100
      ||||||||||||||| | |||||||||| ||||||| ||||   ||||||
seq2  AGTGCATGTGGATGA-AAGGAGATAACC-ATCATTT-CTAC--TCAGTTC  1094

seq1  ATCCCTGTCT-ACCTACTCCACCCGCCTCCTGCCTCGCGCC--TCTGAGT  1147
      || ||||||| || |||||||||||||| |||||| |||||   ||||||
seq2  AT-CCTGTCTAACTTACTCCACCCGCCTTCTGCCTTGCGCCCTCCTGAGT  1143

seq1  CTGGCCAC-GTGGT-CTGCAT-CCTTTGAAAGGGGACACACTGCTGCTCA  1194
      |||  ||| ||| | |||||| ||||||||| |||||| ||||||||  |
seq2  CTG--CACGGTGATCCTGCATCCCTTTGAAA-GGGACA-ACTGCTGCCTA  1189

seq1  TCGCCTGCCTGGCTGTG  1211
        |||||||| ||||||
seq2  ATGCCTGCCT-GCTGTG  1205


seq1: chr15_62118253_62119380
seq2: B6Ng01-260J07.g_66_1175 (reverse)

seq1  CAGGACTGTTCCGTAATGCATTCACAACCACACATGCAAGGAGAGGGTCA  50
      |||||||||  ||||  |||||||| | ||||||||||  ||||||||| 
seq2  CAGGACTGT--CGTATGGCATTCAC-AGCACACATGCA--GAGAGGGTC-  44

seq1  AGATTGAAGCCAGCATTCCTCTCGTGCACAGACCCTAATCTCATTACTTT  100
      ||||||||||||||||  ||| |||||||||||| |||||||| ||| ||
seq2  AGATTGAAGCCAGCAT--CTC-CGTGCACAGACCTTAATCTCA-TAC-TT  89

seq1  TTACTCATGCATTTCCTCCCCGAGCTGGATACTAACCAGCTGAGCCACAT  150
      |||||||||||||| ||||||||||| |||||||| |||||||| |||||
seq2  TTACTCATGCATTT-CTCCCCGAGCT-GATACTAA-CAGCTGAG-CACAT  135

seq1  ACCTTACTCAACAGCGATGGCTGCAAATACTTTTGTCTGCTTATATGTAA  200
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  A-CTTACTCAACAGCGATGGCTGCAAATAC-TTTGTCTGCTTATATGTAA  183

seq1  AGCAAGCTACTTAGGAGACAGTGAAAATGACATTAGACATAATACAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTACTTAGGAGACAGTGAAAATGACATTAGACATAATACAGAGG  233

seq1  CAGAGTCTGTGTGCAACTGTGTCTTGAATGCTTAGATGAGATGTTTTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTGTGTGCAACTGTGTCTTGAATGCTTAGATGAGATGTTTTCGT  283

seq1  TTCTGTATGCTAGGATCTACAAAATGCATCCCGTTGCTTGAGCCCACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGCTAGGATCTACAAAATGCATCCCGTTGCTTGAGCCCACTTG  333

seq1  TTACGAGGACCTATTCACAGTAGTCACTCAGCTGTATCAAAAGGTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGGACCTATTCACAGTAGTCACTCAGCTGTATCAAAAGGTCATGA  383

seq1  AAAACATCCTGTGGAAAGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACATCCTGTGGAAAGGC-TTTTTTTTTTTTTTTTTTTTTTTTTTTTC  432

seq1  TGGGCAGAGGATCTAGAGTATTTATGAGTCACTTGAAGGCTCTGTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGGATCTAGAGTATTTATGAGTCACTTGAAGGCTCTGTTTCCC  482

seq1  TCTAGAGATGAGACATTCTAATTCTCCCATCTGTTGAGTTTGACTTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGATGAGACATTCTAATTCTCCCATCTGTTGAGTTTGACTTACCA  532

seq1  CTTTCCCCAGAGGAGTCTTGGAGGCAAGGAGAAATCATGCTGACTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCAGAGGAGTCTTGGAGGCAAGGAGAAATCATGCTGACTAAATG  582

seq1  GTGGTTGAAATTTGTAGGGTGACTGTTCAGTTTAGCAGAGAATAACTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGAAATTTGTAGGGTGACTGTTCAGTTTAGCAGAGAATAACTAGA  632

seq1  AGGCACACTGTATCACCGCATTTGAAAAATCATTAAAAATGTTCCTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACTGTATCACCGCATTTGAAAAATCATTAAAAATGTTCCTGCTT  682

seq1  CACATTCCTGTGGCTCCTTAAACTCAACCCTCCAGAGGACCTTCCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCTGTGGCTCCTTAAACTCAACCCTCCAGAGGACCTTCCTCCCT  732

seq1  CCCCCTGCCAGCTAAAGCTGTGTCATTCTGAGCTGTGGCTATTGGTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCAGCTAAAGCTGTGTCATTCTGAGCTGTGGCTATTGGTCATT  782

seq1  TCCTGTCTCATCCATCCAAATGCTTGTTTTATTATGACTGCCATGAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCATCCATCCAAATGCTTGTTTTATTATGACTGCCATGAGAAT  832

seq1  GGGCTCTGAGCTAGGGACTGGGTTTCACAGCCATTGGCGGATGTGTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGAGCTAGGGACTGGGTTTCACAGCCATTGGCGGATGTGTTTCC  882

seq1  TCCAATGTGGGAGCAGAGGGAAAGAATGCGGGATTCGCCTTCAGGAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTGGGAGCAGAGGGAAAGAATGCGGGATTCGCCTTCAGGAACCT  932

seq1  GCATGCAGTCACCAGCTCTCTGCTAGCACTTGTGCTCATGGGTGTACTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGTCACCAGCTCTCTGCTAGCACTTGTGCTCATGGGTGTACTAC  982

seq1  TCAAGCATGTCTCTTTCAAACTGTATTTCTTTTTTGAGTACTTAGAATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATGTCTCTTTCAAACTGTATTTCTTTTTTGAGTACTTAGAATAT  1032

seq1  ATTAGTCCTCTGCTAGATATTGGGAACTGGAAGTACACAAAAATACAATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCCTCTGCTAGATATTGGGAACTGGAAGTACACAAAAATACAATA  1082

seq1  AAAATAGATCCTCCTATTTTTAGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  AAAATAGATCCTCCTATTTTTAGAATTC  1110


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