BAC Information

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BAC

Clone NameB6Ng01-261I09
Chromosome15 (Build37)
Map Location 32,346,347 - 32,470,489
singlet/doubletdoublet
Overlap geneSema5a
Upstream geneRopn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261I09.bB6Ng01-261I09.g
ACCGA066171GA066172
length977451
definitionB6Ng01-261I09.b B6Ng01-261I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,346,347 - 32,347,320)(32,470,034 - 32,470,489)
sequence
gaattccctagacaaggtcagcgaaggagaaaccctgccaatgaagggag
tctcctaaattgcaccaagcccagaggctatgcagtcctagaggacttca
acttaaattaacagaatttccactcctacacatatgaccacacccattcc
ctcccacacatacacataccggtacacacacatctataccatacacacac
aatctatactatgtatgtacacatacccaccatacatacacacacacaca
ccaataaacacacatatgaacacacatatctatacctatacatatatgca
cacatccatacacaacagcacaaatgcacaaaatacatctatactgtaca
tctacactcactcatatacccctacacccttatacacacacagccttata
tgcatacatatacatacacatcacacaaaccccatccctcccacagacag
acagacagatacatacaccccccccacacaagcatacactaacaagcaca
cacacacacacacacacacacacacacacggtgttgggggggggggaaga
aacgctgaaacatcacctagtttcaagatcagctgtttgtgttttctaac
atcacatgtcatcacatgttgcaaccttaaaggtttcatagtaggacttt
tccaaaacactacccaccaggaaacaaaacctgagctcatatttatagga
tcattctcttgtatgttgtaggtacttttcacacatgaggagaaggtgag
ctttcgcagaagacacgttcccagagtcagagaccccttgcccaccatga
agggagcctgcatcctttgcatggctgttctcaatctggggagtgtggag
actttgctaggcccgagacccaggaccctgccaagtgccagagagctgag
caccctgtcgtctcttacaaaaggtaagaatttgctatattgattacaga
ctatagcttaaaatccaatcccatgtt

tcagaagagaacagggttctcctgaatgcaaggaccatatcggggtggag
tcttcatgtctcaggttatcaaaatctaaaccaaaatccgcatttacaga
cacagactcagtgacttgtcaacaaagtccacctcaggcttactgcttcc
tggtgcaaatccatgacccagaaaataagaaaagaagtaagagaaagttg
ctgaaagcaaagtgaagataaaaaggaaagaccacgggggcggcgggggg
agggggggtgataccaaaggaggagcaagtttatccaggttacctgctag
ctcccaggccttctgcatggtgacagtgtcaccaggctgaaaccctggaa
agaaagtccagtgtgccctccagtgactttcactttctcctcctgatgaa
gcctacctgcctcggctgattggggtaggatttggggttccagggaaacc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32346347_32347320
seq2: B6Ng01-261I09.b_48_1024

seq1  GAATTCCCTAGACAAGGTCAGCGAAGGAGAAACCCTGCCAATGAAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGACAAGGTCAGCGAAGGAGAAACCCTGCCAATGAAGGGAG  50

seq1  TCTCCTAAATTGCACCAAGCCCAGAGGCTATGCAGTCCTAGAGGACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAATTGCACCAAGCCCAGAGGCTATGCAGTCCTAGAGGACTTCA  100

seq1  ACTTAAATTAACAGAATTTCCACTCCTACACATATGACCACACCCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTAACAGAATTTCCACTCCTACACATATGACCACACCCATTCC  150

seq1  CTCCCACACATACACATACCGGTACACACACATCTATACCATACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACACATACACATACCGGTACACACACATCTATACCATACACACAC  200

seq1  AATCTATACTATGTATGTACACATACCCACCATACATACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATACTATGTATGTACACATACCCACCATACATACACACACACACA  250

seq1  CCAATAAACACACATATGAACACACATATCTATACCTATACATATATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAACACACATATGAACACACATATCTATACCTATACATATATGCA  300

seq1  CACATCCATACACAACAGCACAAATGCACAAAATACATCTATACTGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCATACACAACAGCACAAATGCACAAAATACATCTATACTGTACA  350

seq1  TCTACACTCACTCATATACCCCTACACCCTTATACACACACAGCCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTCACTCATATACCCCTACACCCTTATACACACACAGCCTTATA  400

seq1  TGCATACATATACATACACATCACACAAACCCCATCCCTCCCACAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATATACATACACATCACACAAACCCCATCCCTCCCACAGACAG  450

seq1  ACAGACAGATACATACACCCCCCCCACACAAGCATACACTAACAAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGATACATACACCCCCCCCACACAAGCATACACTAACAAGCACA  500

seq1  CACACACACACACACACACACACACACACGGTGTTGGGGGGGGGGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACGGTGTTGGGGGGGGGGGAAGA  550

seq1  AACGCTGAAACATCACCTAGTTTCAAGATCAGCTGTTTGTGTTTTCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGAAACATCACCTAGTTTCAAGATCAGCTGTTTGTGTTTTCTAAC  600

seq1  ATCACATGTCATCACATGTTGCAACCTTAAAGG-TTCATAGTAGGACTTT  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCACATGTCATCACATGTTGCAACCTTAAAGGTTTCATAGTAGGACTTT  650

seq1  TCCAAAACACTACCCACCAGGAAACAAAACCTGAGCTCATATTTATAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACACTACCCACCAGGAAACAAAACCTGAGCTCATATTTATAGGA  700

seq1  TCATTCTCTTGTATGTTGTAGGTACTTTTCACACATGAGGAGAAGGTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTTGTATGTTGTAGGTACTTTTCACACATGAGGAGAAGGTGAG  750

seq1  C-TTCGCAGAAGACACGTTCCCAGAGTCAGAGACCCCTTGCCCACCATGA  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGCAGAAGACACGTTCCCAGAGTCAGAGACCCCTTGCCCACCATGA  800

seq1  AGGGAGCCTGCATCC-TTGCATGGCTGTTCTCAAGCCTGGGAGTGTGGAG  847
      ||||||||||||||| |||||||||||||||||| |  ||||||||||||
seq2  AGGGAGCCTGCATCCTTTGCATGGCTGTTCTCAATCTGGGGAGTGTGGAG  850

seq1  AC-TTGCTAGGCCCGAGACCCAGGACCCTGCCAAGTGCCAGAGAGCTGAG  896
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTAGGCCCGAGACCCAGGACCCTGCCAAGTGCCAGAGAGCTGAG  900

seq1  CACCCTGTCGTCTCTTAC-AAAGGTAAGGAATTGGCTATATTGATTACAA  945
      |||||||||||||||||| |||||||| ||||| |||||||||||||| |
seq2  CACCCTGTCGTCTCTTACAAAAGGTAA-GAATTTGCTATATTGATTAC-A  948

seq1  GACTATAGCTTAAATTCAAATCCCATGTT  974
      |||||||||||||| || |||||||||||
seq2  GACTATAGCTTAAAATCCAATCCCATGTT  977


seq1: chr15_32470034_32470489
seq2: B6Ng01-261I09.g_67_523 (reverse)

seq1  AGGTTTCCCTGAAACCCTGTATCCTA-AGCAATCAGCCGAGGCAGGTAGG  49
      ||||||||||| |||||   ||||||   |||||||||||||||||||||
seq2  AGGTTTCCCTGGAACCCCAAATCCTACCCCAATCAGCCGAGGCAGGTAGG  50

seq1  CTACATCAGGAGGAGATAGTGAAAGTCACTGGTGGGCACACTGGACTTTC  99
      || ||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CTTCATCAGGAGGAGAAAGTGAAAGTCACTGGAGGGCACACTGGACTTTC  100

seq1  TTTCCAGGGTTTCAGCCTGGTGACACTGTCACCATGCAGAAGGCCTGGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGGTTTCAGCCTGGTGACACTGTCACCATGCAGAAGGCCTGGGA  150

seq1  GCTAGCTGGTAACCTGGATAAACTTGCTCCTCCTTTGGTATCACCCCCCC  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGGTAACCTGGATAAACTTGCTCCTCCTTTGGTATCACCCCCCC  200

seq1  TCCCCCCGCCGCCCCCGTGGTCTTTCCTTTTTATCTTCACTTTGCTTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCGCCGCCCCCGTGGTCTTTCCTTTTTATCTTCACTTTGCTTTCA  250

seq1  GCAACTTTCTCTTACTTCTTTTCTTATTTTCTGGGTCATGGATTTGCACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTCTCTTACTTCTTTTCTTATTTTCTGGGTCATGGATTTGCACC  300

seq1  AGGAAGCAGTAAGCCTGAGGTGGACTTTGTTGACAAGTCACTGAGTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGTAAGCCTGAGGTGGACTTTGTTGACAAGTCACTGAGTCTGT  350

seq1  GTCTGTAAATGCGGATTTTGGTTTAGATTTTGATAACCTGAGACATGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAAATGCGGATTTTGGTTTAGATTTTGATAACCTGAGACATGAAG  400

seq1  ACTCCACCCCGATATGGTCCTTGCATTCAGGAGAACCCTGTTCTCTTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCCCGATATGGTCCTTGCATTCAGGAGAACCCTGTTCTCTTCTG  450

seq1  AGAATTC  456
      |||||||
seq2  AGAATTC  457


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