BAC Information

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BAC

Clone NameB6Ng01-262B13
Chromosome15 (Build37)
Map Location 22,129,679 - 22,130,798
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B13.bB6Ng01-262B13.g
ACCGA066602GA066603
length1,2311,119
definitionB6Ng01-262B13.b B6Ng01-262B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaccgagactaaagagtagtggactgctttctatggcagaaaaa
aatttaagtataacagttaaattatgtcatgtttgttaataacttattca
ggatacaatagaaaagaaaaggtggtacaggaacaaaagaacagtttaaa
gaaacactcacaccaagaaatatcaggtggtatccaaaattgtgcagagt
ccttccacattgcattaggagaaagggaagggtcttcttctaaggaagat
gccactgagctagacttgcaaattgtgaaaacaattttgaggtcttgttg
ttctgaaactcaatataaaatgtattgccaatttgattcaaaggtttcag
cattctcccaagatgacagttgactcagcagctttttccacatggtcctg
cctttacaggcatgaaggatgcaagcatgatgggtcttggattcttccat
cacagtttcagagatgctgtgaggccaggcagcatgtggtggcgccatcc
ctgtgtgaaggcacggggaatacaagaagctgtgattgaccattgtatgt
agtcatgaaaggaaagtcttggtttaagtaggaagcccaagtgttgaaga
agacttagccatgggatatccggaaagatgagatgcttagaaagatggaa
tctgctacaggggaaggcaagttgactgttgtatttaaagaagaagggca
gatccatctaattttttgaagatagtgtcctcgatgttggacatggcgtt
ccaggactgctatttgtccttataggttctggtcgtgctttggtccagta
cttactttacttattatgcccagatttcttactttcggaataagaacaca
tattctgtaccttactgtgtgggaaatgggtaatttttgagcaagttttt
ctgacttttattgaagatacattcttttctcatacaatatattctgatta
tagtttgctgtccctctactgttccatgcttcaccccatcttccccctcc
tctgctcattccttttctgcctctcattagaaaagaacagctttctatag
ataacagctaaacaggacaagtaaatataataagataggcaaaatcatcc
tcacattgtcagaaaagccaccaccgaaggaactagttgcctcagagagg
aaacagatccgagatcgagccatggctcagactcagaattccctgaaagg
ccataaagcctataatgtcctctttaatcat
gaattcagtatttataattttcctgttatattgcagtaacaaatttggaa
aataaagtttaaagtctccatcaacaaattgaaaaataccttcactttac
ttttaaaattatttaaaggaatctctttagttttctaggcataccccaat
tggtaatttgtttaatactgtaatttttcttccattttattatttatgaa
attgagaagattcaaattcttcgtctgaagaggagttgtatgtaacctta
gatagaatagggtggattttaaaaatcacttgatacattcactaacgtgt
tcatatattcttctaagaggtaatttcaatgaaatatataattattcctg
aagtaatttacagtagaaattgagcaaaatgtattgtgaaagtattttta
aacaattctgtcagtatctcaaacagtgtggcagaacagatctattacaa
caaacatgaatattgtccagggcatatttcttgttcagatcaagtctaat
ttatatctccaagacagtagaaacactcctaatttcctaaagtgactttc
agagaaaagacctattgtaaagggaagggttagtaggcaatccttcttgt
gtctatttctggttttatctctgaagccaaatcttggaatttcttttgtc
taaagctatctattcatttgtactgaataatctttgttttgcaaagggac
taaataactgaaacattataagtaattcaaggaatgattcatcaaatatg
cagtgcatggtttatcataatgtgatggtatgatggttatttctctaaac
ctcttttctctttggtgtatttcagccattaaaaaaatgttcatggctta
attcatactgtggaaagaaatacaataatttggccaattttactaatctt
ttcaattacctcctgccttttttaaataattctttctttatctctaagta
ttgatatgtaagtttatatctatataatttcattgtccattatcatcaca
cttagcttgtaacttgatttcactaatgaaatgtatacagatctggtgta
tgtaatttcagaagctaaccactgccatgacaccacatcatttctgctct
ccattgttcagttaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22129679_22130798
seq2: B6Ng01-262B13.g_65_1183

seq1  GAATTCAGTATTTATAATTTTCCTGTTATATTGCAGTAACAAATTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTTATAATTTTCCTGTTATATTGCAGTAACAAATTTGGAA  50

seq1  AATAAAGTTTAAAGTCTCCATCAACAAATTGAAAAATACCTTCACTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTTTAAAGTCTCCATCAACAAATTGAAAAATACCTTCACTTTAC  100

seq1  TTTTAAAATTATTTAAAGGAATCTCTTTAGTTTTCTAGGCATACCCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTATTTAAAGGAATCTCTTTAGTTTTCTAGGCATACCCCAAT  150

seq1  TGGTAATTTGTTTAATACTGTAATTTTTCTTCCATTTTATTATTTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTGTTTAATACTGTAATTTTTCTTCCATTTTATTATTTATGAA  200

seq1  ATTGAGAAGATTCAAATTCTTCGTCTGAAGAGGAGTTGTATGTAACCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAGATTCAAATTCTTCGTCTGAAGAGGAGTTGTATGTAACCTTA  250

seq1  GATAGAATAGGGTGGATTTTAAAAATCACTTGATACATTCACTAACGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATAGGGTGGATTTTAAAAATCACTTGATACATTCACTAACGTGT  300

seq1  TCATATATTCTTCTAAGAGGTAATTTCAATGAAATATATAATTATTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTCTTCTAAGAGGTAATTTCAATGAAATATATAATTATTCCTG  350

seq1  AAGTAATTTACAGTAGAAATTGAGCAAAATGTATTGTGAAAGTATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTTACAGTAGAAATTGAGCAAAATGTATTGTGAAAGTATTTTTA  400

seq1  AACAATTCTGTCAGTATCTCAAACAGTGTGGCAGAACAGATCTATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCTGTCAGTATCTCAAACAGTGTGGCAGAACAGATCTATTACAA  450

seq1  CAAACATGAATATTGTCCAGGGCATATTTCTTGTTCAGATCAAGTCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGAATATTGTCCAGGGCATATTTCTTGTTCAGATCAAGTCTAAT  500

seq1  TTATATCTCCAAGACAGTAGAAACACTCCTAATTTCCTAAAGTGACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTCCAAGACAGTAGAAACACTCCTAATTTCCTAAAGTGACTTTC  550

seq1  AGAGAAAAGACCTATTGTAAAGGGAAGGGTTAGTAGGCAATCCTTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGACCTATTGTAAAGGGAAGGGTTAGTAGGCAATCCTTCTTGT  600

seq1  GTCTATTTCTGGTTTTATCTCTGAAGCCAAATCTTGGAATTTCTTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTCTGGTTTTATCTCTGAAGCCAAATCTTGGAATTTCTTTTGTC  650

seq1  TAAAGCTATCTATTCATTTGTACTGAATAATCTTTGTTTTGCAAAGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATCTATTCATTTGTACTGAATAATCTTTGTTTTGCAAAGGGAC  700

seq1  TAAATAACTGAAACATTATAAGTAATTCAAGGAATGATTCATCAAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTGAAACATTATAAGTAATTCAAGGAATGATTCATCAAATATG  750

seq1  CAGTGCATGGTTTATCATAATGTGATGGTATGATGGTTATTTCTCTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATGGTTTATCATAATGTGATGGTATGATGGTTATTTCTCTAAAC  800

seq1  CTCTTTTCTCTTTGGTGTATTTCAGCCATTAAAAAAATGTTCATGGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCTTTGGTGTATTTCAGCCATTAAAAAAATGTTCATGGCTTA  850

seq1  ATTCATACTGTGGAAAGAAATACAATAATTTGGCCAATTTTACTAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACTGTGGAAAGAAATACAATAATTTGGCCAATTTTACTAATCTT  900

seq1  TTCAATTACCTCCTGCCTTTTTTAAATAATTCTTTCTTTATCTCTAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTACCTCCTGCCTTTTTTAAATAATTCTTTCTTTATCTCTAAGTA  950

seq1  TTGATATGTTAAGTTTATATCTATATAATTTCATTGTCCATTATCATCAC  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATG-TAAGTTTATATCTATATAATTTCATTGTCCATTATCATCAC  999

seq1  ACTTAGCCTTGTAACTTGATTTCACTAATGAAATGTATACAGATCTGGTT  1050
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTTAG-CTTGTAACTTGATTTCACTAATGAAATGTATACAGATCTGG-T  1047

seq1  GTATGTAATTTCAG-AGCTAA-CACTTGCATGGACACCACATCA-TTCTG  1097
      |||||||||||||| |||||| ||||  ||| |||||||||||| |||||
seq2  GTATGTAATTTCAGAAGCTAACCACTGCCAT-GACACCACATCATTTCTG  1096

seq1  CTCTC--ATGTCCAAGGTTAAGAAA  1120
      |||||   ||| ||  |||||||||
seq2  CTCTCCATTGTTCA--GTTAAGAAA  1119