BAC Information

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BAC

Clone NameB6Ng01-262E08
Chromosome15 (Build37)3 (Build37)
Map Location 99,599,291 - 99,600,11232,026,252 - 32,026,392
singlet/doubletsingletsinglet
Overlap geneLass5
Upstream geneWnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik
Downstream geneLima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262E08.bB6Ng01-262E08.g
ACCGA066731GA066732
length823235
definitionB6Ng01-262E08.b B6Ng01-262E08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,599,291 - 99,600,112)(32,026,252 - 32,026,392)
sequence
gaattcctccccttgcaaaaggttattcttagtacatagtcctggctggc
ctaccactcattttatagccaaaactgggtcccaagttcatgatcttcct
gcctcagcttcttgagtactggggtagaagttaaatattatagctaggtg
taggagtgcacattaaattgtaatccctgggcctggaggtggttgtgcac
gcctttaatcacaacacttgggaggcagaggcaaagggatctttgagttc
aagactagcctggtctacagagtgagttccaggacagccaggctacacag
agaaaccctgtctcaaaaaaaccaaaccaaaccaaataaaataaatgtaa
gaacttagggaagctgaggaaagagaattcctgtgtgctcaggaccagct
gggctatatatataaactatcagaccagctagtttcatagttaagctcaa
gcagacaaacaacaacaacaacaaaaaaccctggaaggtggcttaaggat
aagtcttatcatagactatgaaagaacagcactgtggggaaatgagctta
gtgctaggtctggcaccaaactcttgaggtacttggaatgaaactcagtg
ttccaccacagagcagaacctccagctcttgttagactcagtttattgac
tgtaaaagggggactggcatctaccacttaccagtttatgactgctatat
catttgtttctcaaaattaaataggcagaatttgggagataagaaaatgc
ggggggaaaccaatttcccaattattttagatagacttttttcgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgt
agtcatcctggtctagaatgagactctgtctaaaacaaaacaatccgtca
tacttaaaactgataatacatttctctgaaagtttctttttctcctatga
ctttcagaagtctatattctcataatttgctttttatctttttggccatt
tgctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgagtgagagcgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99599291_99600112
seq2: B6Ng01-262E08.b_43_865

seq1  GAATTCCTCCCCTTGCAAAAGGTTATTCTTAGTACATAGTCCTGGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCCTTGCAAAAGGTTATTCTTAGTACATAGTCCTGGCTGGC  50

seq1  CTACCACTCATTTTATAGCCAAAACTGGGTCCCAAGTTCATGATCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTCATTTTATAGCCAAAACTGGGTCCCAAGTTCATGATCTTCCT  100

seq1  GCCTCAGCTTCTTGAGTACTGGGGTAGAAGTTAAATATTATAGCTAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTTCTTGAGTACTGGGGTAGAAGTTAAATATTATAGCTAGGTG  150

seq1  TAGGAGTGCACATTAAATTGTAATCCCTGGGCCTGGAGGTGGTTGTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGCACATTAAATTGTAATCCCTGGGCCTGGAGGTGGTTGTGCAC  200

seq1  GCCTTTAATCACAACACTTGGGAGGCAGAGGCAAAGGGATCTTTGAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCACAACACTTGGGAGGCAGAGGCAAAGGGATCTTTGAGTTC  250

seq1  AAGACTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCTACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGCTACACAG  300

seq1  AGAAACCCTGTCTCAAAAAAACCAAACCAAACCAAATAAAATAAATGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAAAAAAACCAAACCAAACCAAATAAAATAAATGTAA  350

seq1  GAACTTAGGGAAGCTGAGGAAAGAGAATTCCTGTGTGCTCAGGACCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGGGAAGCTGAGGAAAGAGAATTCCTGTGTGCTCAGGACCAGCT  400

seq1  GGGCTATATATATAAACTATCAGACCAGCTAGTTTCATAGTTAAGCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATATATATAAACTATCAGACCAGCTAGTTTCATAGTTAAGCTCAA  450

seq1  GCAGACAAACAACAACAACAACAAAAAACCCTGGAAGGTGGCTTAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAAACAACAACAACAACAAAAAACCCTGGAAGGTGGCTTAAGGAT  500

seq1  AAGTCTTATCATAGACTATGAAAGAACAGCACTGTGGGGAAATGAGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTATCATAGACTATGAAAGAACAGCACTGTGGGGAAATGAGCTTA  550

seq1  GTGCTAGGTCTGGCACCAAACTCTTGAGGTACTTGGAATGAAACTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGTCTGGCACCAAACTCTTGAGGTACTTGGAATGAAACTCAGTG  600

seq1  TTCCACCACAGAGCAGAACCTCCAGCTCTTGTTAGACTCAGTTTATTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCACAGAGCAGAACCTCCAGCTCTTGTTAGACTCAGTTTATTGAC  650

seq1  TGTAAAAGGGGGACTGGCATCTACCACTTACCAGTTTATGACTGCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGGGGGACTGGCATCTACCACTTACCAGTTTATGACTGCTATAT  700

seq1  CATTTGTTTCTCAAAATTAAATAGGCAGAATTTGGGAGATAAGAAAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTCTCAAAATTAAATAGGCAGAATTTGGGAGATAAGAAAATGC  750

seq1  -GGGGGAAACCAATTTCCCAATTATTTTAGATAGACTTTTTTCGTGTGTG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAAACCAATTTCCCAATTATTTTAGATAGACTTTTTTCGTGTGTG  800

seq1  TGTGTGTGTGTGTGTGTGTGTGT  822
      |||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGT  823

seq1: chr3_32026252_32026392
seq2: B6Ng01-262E08.g_138_307

seq1  ATACAGTTTCTCTGAATGTGTACGTTCCTAC-----------GTAGTCTG  39
      ||||| |||||||||| || |   || || |           | ||||| 
seq2  ATACA-TTTCTCTGAAAGTTTCTTTTTCTCCTATGACTTTCAGAAGTCTA  49

seq1  TGTGC-------ATGCATAATCTCCTCCTGGAC----CCCCCCTCTCTCT  78
      | | |        ||| |  | || |  ||| |     | | ||||||||
seq2  TATTCTCATAATTTGCTTTTTATCTTTTTGGCCATTTGCTCTCTCTCTCT  99

seq1  CTCTCTCTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  128
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  149

seq1  GTGT--------GTGTGTGTG  141
      ||||        | |||||||
seq2  GTGTGAGTGAGAGCGTGTGTG  170