BAC Information

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BAC

Clone NameB6Ng01-262E18
Chromosome15 (Build37)
Map Location 21,470,576 - 21,471,735
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262E18.bB6Ng01-262E18.g
ACCGA066751GA066752
length1,1571,197
definitionB6Ng01-262E18.b B6Ng01-262E18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattgttgttaatgtgtaaatctcttcatgcattgacactgtaa
atactgtattcaagcaatgcattaaacatttttctgtgtactataaatat
gctggtgggcagaaatgttcatttacttaactgtccactgtttctaccta
tatgtggctaccttctcaatttttgcaaagatttaacatttatgcaatga
ccatttagttctacaaaggctgatataaatctcttcaacagatgttattt
acagtcaatagcatgaggagaaataatatgggttttaggaacatgactga
aaacttacaacacattactataaaaaaaaaacatcaatacataatagtat
tgtgaacctctcaccaattactgtgtgtctatggatagttttctaaaggc
aagatgatttttataggataacaaatataaaaatatttgctcccaatgaa
gaacgtggagagcaggtttaatgacatgttgagttcccagtggttgtttc
tgttcccttagtgaagtcagatgtgcatctcttgagtccactcttgaact
tgaaacaggatttaaagagggaaagattgcaattgagtgtgtgtaacctt
ttaaaattcatataaggaactggaaaggtggctcagttcataagtatgct
tgcttcacaagaagaagagtatgagttgagaacccagcattcatataaaa
aatgtaaaatgaaaacaggtatgatacactcatgcccatcacacaagcac
actgtagagttaagtgaaagaatcatcatttgtcctccagaccacattga
gtttcatgaataagctacatctaaagaaaataagatagatagtaatagat
agagacttggggattttctcttgcatctccatgtttacagaagtcttgaa
tatacataaatgcacacacagacacacacacccatccatatgtcaaaata
ttaacctaaatatgaaattaggatatgaggcttgggaatacaggaaaatt
aaagaattcttggtggcatccttaggaaagaagcttattgtctaaaataa
cttattaaatatgtatgtgtaatatactcgagcatgtttgtttctttttt
tttctttttcacaccaatgatcctacagtgtctggtagcccacagaaaca
tcctgaa
gaattctcacctgaggaatactgaatggcagagaaacacctgaaaaaatg
ttcaacatccttattcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagcattactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatatccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggaggtacagagacaaagtttggagctgagataa
aaagatggaccatgtagagactgccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccca
atgaaggagctagagaaagtacccaagaagctaaaggatctgcaacccga
taggtggaacacattatgaactaaccagtaccccggagctctgactctag
cttgcatatgttatcaaagatgcctaggcgccatcactgaaagaaaggtc
ctaattgaacccgcaaacttatatgctcccagttacagaactgcagccaa
gaaatggccatggatggctacggcagcttggtcatcagcacacgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21470576_21471735
seq2: B6Ng01-262E18.b_47_1203 (reverse)

seq1  TTCAGGATG-TTCTGTGGGCTTCACAGACACTGTAGGATCA-TGGTGTGA  48
      ||||||||| ||||||||||| | ||||||||||||||||| ||||||| 
seq2  TTCAGGATGTTTCTGTGGGCTAC-CAGACACTGTAGGATCATTGGTGTG-  48

seq1  AAAAAGAAAAAAAAAAAAAGAAAACAAACATGCTCGAGTATA-TACACAT  97
      |||||||||||||||      ||||||||||||||||||||| |||||||
seq2  AAAAAGAAAAAAAAA-----GAAACAAACATGCTCGAGTATATTACACAT  93

seq1  ACATATTAAATAAG-TATTTTAGGACAATAAGC-TCTTTCCTAAGGATGC  145
      ||||||| |||||| ||||||| |||||||||| ||||||||||||||||
seq2  ACATATTTAATAAGTTATTTTA-GACAATAAGCTTCTTTCCTAAGGATGC  142

seq1  CACCAAG-ATTCTTTAATTTTCCTGTATTCCAAAGCCTCATATCCTAATT  194
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCAAGAATTCTTTAATTTTCCTGTATTCCCAAGCCTCATATCCTAATT  192

seq1  TCATATTTAGGTTAATATTTTGACATATGGATGGGTGTGTGTGTCTGTGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTAGGTTAATATTTTGACATATGGATGGGTGTGTGTGTCTGTGT  242

seq1  GTGCATTTATGTATATTCAAAGACTTCTGTAAACATGGAGATGCAAGAGA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGCATTTATGTATATTC-AAGACTTCTGTAAACATGGAGATGCAAGAGA  291

seq1  AAATCCCCAAGTCTCTATCTATTACTATCTATCTTATTTTCTTTAGATGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAAGTCTCTATCTATTACTATCTATCTTATTTTCTTTAGATGT  341

seq1  AGCTTATTCATGAAACTCAATGTGGTCTGGAGGACAAATGATGATTCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTCATGAAACTCAATGTGGTCTGGAGGACAAATGATGATTCTTT  391

seq1  CACTTAACTCTACAGTGTGCTTGTGTGATGGGCATGAGTGTATCATACCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACTCTACAGTGTGCTTGTGTGATGGGCATGAGTGTATCATACCT  441

seq1  GTTTTCATTTTACATTTTTTATATGAATGCTGGGTTCTCAACTCATACTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTTTACATTTTTTATATGAATGCTGGGTTCTCAACTCATACTC  491

seq1  TTCTTCTTGTGAAGCAAGCATACTTATGAACTGAGCCACCTTTCCAGTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGTGAAGCAAGCATACTTATGAACTGAGCCACCTTTCCAGTTC  541

seq1  CTTATATGAATTTTAAAAGGTTACACACACTCAATTGCAATCTTTCCCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGAATTTTAAAAGGTTACACACACTCAATTGCAATCTTTCCCTC  591

seq1  TTTAAATCCTGTTTCAAGTTCAAGAGTGGACTCAAGAGATGCACATCTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCTGTTTCAAGTTCAAGAGTGGACTCAAGAGATGCACATCTGA  641

seq1  CTTCACTAAGGGAACAGAAACAACCACTGGGAACTCAACATGTCATTAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTAAGGGAACAGAAACAACCACTGGGAACTCAACATGTCATTAAA  691

seq1  CCTGCTCTCCACGTTCTTCATTGGGAGCAAATATTTTTATATTTGTTATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTCCACGTTCTTCATTGGGAGCAAATATTTTTATATTTGTTATC  741

seq1  CTATAAAAATCATCTTGCCTTTAGAAAACTATCCATAGACACACAGTAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAATCATCTTGCCTTTAGAAAACTATCCATAGACACACAGTAAT  791

seq1  TGGTGAGAGGTTCACAATACTATTATGTATTGATGTTTTTTTTTTATAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAGGTTCACAATACTATTATGTATTGATGTTTTTTTTTTATAGT  841

seq1  AATGTGTTGTAAGTTTTCAGTCATGTTCCTAAAACCCATATTATTTCTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTGTAAGTTTTCAGTCATGTTCCTAAAACCCATATTATTTCTCC  891

seq1  TCATGCTATTGACTGTAAATAACATCTGTTGAAGAGATTTATATCAGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTATTGACTGTAAATAACATCTGTTGAAGAGATTTATATCAGCCT  941

seq1  TTGTAGAACTAAATGGTCATTGCATAAATGTTAAATCTTTGCAAAAATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAACTAAATGGTCATTGCATAAATGTTAAATCTTTGCAAAAATTG  991

seq1  AGAAGGTAGCCACATATAGGTAGAAACAGTGGACAGTTAAGTAAATGAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAGCCACATATAGGTAGAAACAGTGGACAGTTAAGTAAATGAAC  1041

seq1  ATTTCTGCCCACCAGCATATTTATAGTACACAGAAAAATGTTTAATGCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCCACCAGCATATTTATAGTACACAGAAAAATGTTTAATGCAT  1091

seq1  TGCTTGAATACAGTATTTACAGTGTCAATGCATGAAGAGATTTACACATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAATACAGTATTTACAGTGTCAATGCATGAAGAGATTTACACATT  1141

seq1  AACAACAATGGAATTC  1160
      ||||||||||||||||
seq2  AACAACAATGGAATTC  1157