BAC Information

Click to search

BAC

Clone NameB6Ng01-263B19
Chromosome15 (Build37)
Map Location 98,177,462 - 98,367,531
singlet/doubletdoublet
Overlap geneOlfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418
Upstream geneBC038822, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284
Downstream geneCcnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263B19.bB6Ng01-263B19.g
ACCGA067362GA067363
length1,1281,132
definitionB6Ng01-263B19.b B6Ng01-263B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,177,462 - 98,178,560)(98,366,501 - 98,367,531)
sequence
gaattcagtacactctacgctgggcattctatgcctgtactgggtgtgtg
tgctagttctatgttccaaccctgtatgtaataactgcatctgagtatgt
gtctgacaacctgatctcacagtttggatagcacacttctcactgatagc
agttcactaggtgtatatttgactggcttcaaggtaagatatctgtatgg
tactcatactcaaagaaactgttcacatctcagtgagagaagaggaggtc
ggatattatatagttacagcacaaaaccactcaaagatgtgatctaagaa
cattgccagaaagaaagaaaggaaggaagaaagaaagaaaggaaggaagg
aaggaaggaaggaaggaaggaaggaagaaactgtgtcacagtgggaataa
tctactgagtcaggaaagaaattaaagatttcctagaatccaatgataat
gcattatgtgtcacaatgaaagcagtgctaagagcaaagttcataccact
aagtgccttcattaaaaaatcagagagatcttatgctagcaacttaaaag
catgtctgcaagctctagaacaaaaagaagcgaacacacccaagaggatt
agaaggcaaaacataatcaaagtcagggctgaaatctgcaaattagaaac
aaagagaagaatacaaagaatcaagtaaacaaagagctggccctttgtga
agaccaaccagataaacacttagtcaaagtaaccaaaaaggcagagacaa
attaacaaaaatcagagataaaaagggggaggtggggacatagcaacaga
caccacgcaaatcccgagaatcattgtctgtatccctgtcatagtgatga
acctccagagcgagtgcaggcaggcgctcagcgacaccagtaacctccag
gaattatccagtgaggctgagcatttctgatgctcctttcacacattgca
tgtggttcctgggattctaatcatttaatcatctttcacttcttgccaac
atgaaactagctctggtattccctattcattacaaaagtaatgattccat
ttcgtgatcatattgatggtttgaaattatgaaattgtccctaaatgttt
taatgggcttgaactgctaagttctcag
gaattctcacccaatttaggttatgaaatgttcctttgggtgctatatgg
aatagcttcacaggtgaaggctctcaacaacttaagagagaagggcggct
ccagagagctcacaggtgttgaaagtaatgagagttgtactgtatcttgg
cagtagagtcagtgggatttactctaaggtagaaggcaagtcaaggatga
ctccatgattgaactgaccaactggaaggatagagttactgtttatggta
acaggaggaggaacagggaaatagccttaatattaaatctcaagtttcat
gtagacatttcatggcgaggtcgactgaacagactgcggtaggatgccat
ctaagcaaggatggcacctacttgggagtcatcagtttatgaatgagata
gaacattaagataaccaagagagacggtagaaagtagtcaagagttcaga
acttgagggtgggagaagatgaacaagaaactcaaatgacaccaagaaag
agcaactgagaaaaatgggaaataaagaatatagagagctagaaaatatt
tttaggaaagaaggctcagtgggttaagtgctggtgacagttgggtcctg
gaagcttgctggttaaccagctagaccgcaagctccagaaacagaggaca
ctagaaatctaatgacatctggtctccatagtgacaagcaaaggcaagct
cacctgtgagtgtgcccacacatacacacaagttgctggacagggtagct
cctgcttataattccagcagttggaagctgaggcagaaggattaccatga
ctttgaggccagtctgggggcatctctctggacagggaagagatttcaat
gtgttagatattacacaatagtcttataagacagagcctagaggcttcat
ttggaattaacaaagtgaaaaagtcacctgttaagcttgagtgtcagttt
gctgtggagagatttcctaaccagacaaaattcaagagagtagagatctg
ggactgacaacacaccttgctgggagttggcagtctagctcgctgaccaa
gcaggctttcagaatccactgttctcagcttccctctcaaccagcactaa
gaagcttggagcagagccagtccgtggtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98177462_98178560
seq2: B6Ng01-263B19.b_46_1173

seq1  GAATTCAGTACACTCTACGCTGGGCATTCTATGCCTGTACTGGGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACACTCTACGCTGGGCATTCTATGCCTGTACTGGGTGTGTG  50

seq1  TGCTAGTTCTATGTTCCAACCCTGTATGTAATAACTGCATCTGAGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTTCTATGTTCCAACCCTGTATGTAATAACTGCATCTGAGTATGT  100

seq1  GTCTGACAACCTGATCTCACAGTTTGGATAGCACACTTCTCACTGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACAACCTGATCTCACAGTTTGGATAGCACACTTCTCACTGATAGC  150

seq1  AGTTCACTAGGTGTATATTTGACTGGCTTCAAGGTAAGATATCTGTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTAGGTGTATATTTGACTGGCTTCAAGGTAAGATATCTGTATGG  200

seq1  TACTCATACTCAAAGAAACTGTTCACATCTCAGTGAGAGAAGAGGAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATACTCAAAGAAACTGTTCACATCTCAGTGAGAGAAGAGGAGGTC  250

seq1  GGATATTATATAGTTACAGCACAAAACCACTCAAAGATGTGATCTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTATATAGTTACAGCACAAAACCACTCAAAGATGTGATCTAAGAA  300

seq1  CATTGCCAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGGAAGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGGAAGGAAGG  350

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGAAACTGTGTCACAGTGGGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGAAACTGTGTCACAGTGGGAATAA  400

seq1  TCTACTGAGTCAGGAAAGAAATTAAAGATTTCCTAGAATCCAATGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAGTCAGGAAAGAAATTAAAGATTTCCTAGAATCCAATGATAAT  450

seq1  GCATTATGTGTCACAATGAAAGCAGTGCTAAGAGCAAAGTTCATACCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATGTGTCACAATGAAAGCAGTGCTAAGAGCAAAGTTCATACCACT  500

seq1  AAGTGCCTTCATTAAAAAATCAGAGAGATCTTATGCTAGCAACTTAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTTCATTAAAAAATCAGAGAGATCTTATGCTAGCAACTTAAAAG  550

seq1  CATGTCTGCAAGCTCTAGAACAAAAAGAAGCGAACACACCCAAGAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGCAAGCTCTAGAACAAAAAGAAGCGAACACACCCAAGAGGATT  600

seq1  AGAAGGCAAAACATAATCAAAGTCAGGGCTGAAATCTGCAAATTAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAAACATAATCAAAGTCAGGGCTGAAATCTGCAAATTAGAAAC  650

seq1  AAAGAGAAGAATACAAAGAATCAAGTAAACAAAGAGCTGGCCCTTTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGAATACAAAGAATCAAGTAAACAAAGAGCTGGCCCTTTGTGA  700

seq1  AGACCAACCAGATAAACACTTAGTCAAAGTAACC-AAAAGGCAGAGACAA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGACCAACCAGATAAACACTTAGTCAAAGTAACCAAAAAGGCAGAGACAA  750

seq1  ATTAAC-AAAATCAGAAATAAAAAGGGG--GGTGGGGACATAGCAACAGA  796
      |||||| ||||||||| |||||||||||  ||||||||||||||||||||
seq2  ATTAACAAAAATCAGAGATAAAAAGGGGGAGGTGGGGACATAGCAACAGA  800

seq1  CACCACGCAAATCCCGAGAATCATTGTCTGTATCCCTGTCATAGTGATGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGCAAATCCCGAGAATCATTGTCTGTATCCCTGTCATAGTGATGA  850

seq1  ACCTCCAGAGCGAGTGCAGGCAGGCGCTCAGCGACACCAGTAGCC-CCAG  895
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  ACCTCCAGAGCGAGTGCAGGCAGGCGCTCAGCGACACCAGTAACCTCCAG  900

seq1  GAATT-TCCAGTGAGGCTGAGCATTTCTGATGCTCCTTTCACACATTGTA  944
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GAATTATCCAGTGAGGCTGAGCATTTCTGATGCTCCTTTCACACATTGCA  950

seq1  TGTGG-TCCT-GGATTCT-ATCATTT-ATCATCTTTCACTCCT--GCAAC  988
      ||||| |||| ||||||| ||||||| ||||||||||||| ||   ||||
seq2  TGTGGTTCCTGGGATTCTAATCATTTAATCATCTTTCACTTCTTGCCAAC  1000

seq1  ATG-AACTAGCTCT-GTATTCC--TTTCA-TAC-AAAGTAA-GATTCCA-  1030
      ||| |||||||||| |||||||   |||| ||| ||||||| ||||||| 
seq2  ATGAAACTAGCTCTGGTATTCCCTATTCATTACAAAAGTAATGATTCCAT  1050

seq1  TTCGTGATCATATT-ATGGTTTGAA--TATGAAA-TGTCCC-AAATGTTT  1075
      |||||||||||||| ||||||||||  ||||||| |||||| ||||||||
seq2  TTCGTGATCATATTGATGGTTTGAAATTATGAAATTGTCCCTAAATGTTT  1100

seq1  T-ATGGG-TTGAA-TGCT-AGTTCTCAG  1099
      | ||||| ||||| |||| |||||||||
seq2  TAATGGGCTTGAACTGCTAAGTTCTCAG  1128

seq1: chr15_98366501_98367531
seq2: B6Ng01-263B19.g_164_1201 (reverse)

seq1  TGCCACCACGGCCTGGCTCTGC-CTCAGCTTCTTTAGTGCTGGGTG-GAG  48
      ||||||||||| |||||||||| |  |||||| |||||||||| || |||
seq2  TGCCACCACGGACTGGCTCTGCTCCAAGCTTC-TTAGTGCTGGTTGAGAG  49

seq1  GGAAGCTGGAGACAGGTGGATCCTG-AAGCCTGC-TGGTCAGCCGAGCTA  96
      ||||||| ||||   |||||| ||| |||||||| ||||||| |||||||
seq2  GGAAGCT-GAGAACAGTGGATTCTGAAAGCCTGCTTGGTCAG-CGAGCTA  97

seq1  GACTGCCAACT-CCAGCAA-GTGTGTTGTCAGTCCCAGATCTCTACTCTC  144
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GACTGCCAACTCCCAGCAAGGTGTGTTGTCAGTCCCAGATCTCTACTCTC  147

seq1  TTGAATTTTGTCTGGTTAGG-AATCTCTCCACAGCAAACTGACACTCAAG  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAATTTTGTCTGGTTAGGAAATCTCTCCACAGCAAACTGACACTCAAG  197

seq1  CTT-ACAGGTGACTTTTTCACTTTGTTAATT-CAAATGAAGCCTCTAGGC  241
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTAACAGGTGACTTTTTCACTTTGTTAATTCCAAATGAAGCCTCTAGGC  247

seq1  TCTGTCTTATAAGACTATTGTGTAATATCTAACACATTG-AATCTCTTCC  290
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTGTCTTATAAGACTATTGTGTAATATCTAACACATTGAAATCTCTTCC  297

seq1  CTGTCCAGAGAGATGCCCCCAGACTGGCCTCAAAGTCATGGTAATCCTTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGAGAGATGCCCCCAGACTGGCCTCAAAGTCATGGTAATCCTTC  347

seq1  TGCCTCAGCTTCCAACTGCTGGAATTATAAGCAGGAGCTACCCTGTCCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGCTTCCAACTGCTGGAATTATAAGCAGGAGCTACCCTGTCCAG  397

seq1  CAACTTGTGTGTATGTGTGGGCACACTCACAGGTGAGCTTGCCTTTGCTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTGTGTATGTGTGGGCACACTCACAGGTGAGCTTGCCTTTGCTT  447

seq1  GTCACTATGGAGACCAGATGTCATTAGATTTCTAGTGTCCTCTGTTTCTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTATGGAGACCAGATGTCATTAGATTTCTAGTGTCCTCTGTTTCTG  497

seq1  GAGCTTGCGGTCTAGCTGGTTAACCAGCAAGCTTCCAGGACCCAACTGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCGGTCTAGCTGGTTAACCAGCAAGCTTCCAGGACCCAACTGTC  547

seq1  ACCAGCACTTAACCCACTGAGCCTTCTTTCCTAAAAATATTTTCTAGCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACTTAACCCACTGAGCCTTCTTTCCTAAAAATATTTTCTAGCTC  597

seq1  TCTATATTCTTTATTTCCCATTTTTCTCAGTTGCTCTTTCTTGGTGTCAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTCTTTATTTCCCATTTTTCTCAGTTGCTCTTTCTTGGTGTCAT  647

seq1  TTGAGTTTCTTGTTCATCTTCTCCCACCCTCAAGTTCTGAACTCTTGACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTCTTGTTCATCTTCTCCCACCCTCAAGTTCTGAACTCTTGACT  697

seq1  ACTTTCTACCGTCTCTCTTGGTTATCTTAATGTTCTATCTCATTCATAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTACCGTCTCTCTTGGTTATCTTAATGTTCTATCTCATTCATAAA  747

seq1  CTGATGACTCCCAAGTAGGTGCCATCCTTGCTTAGATGGCATCCTACCGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACTCCCAAGTAGGTGCCATCCTTGCTTAGATGGCATCCTACCGC  797

seq1  AGTCTGTTCAGTCGACCTCGCCATGAAATGTCTACATGAAACTTGAGATT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTCAGTCGACCTCGCCATGAAATGTCTACATGAAACTTGAGATT  847

seq1  TAATATTAAGGCTATTTCCCTGTTCCTCCTCCTGTTACCATAAACAGTAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAAGGCTATTTCCCTGTTCCTCCTCCTGTTACCATAAACAGTAA  897

seq1  CTCTATCCTTCCAGTTGGTCAGTTCAATCATGGAGTCATCCTTGACTTGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCTTCCAGTTGGTCAGTTCAATCATGGAGTCATCCTTGACTTGC  947

seq1  CTTCTACCTTAGAGTAAATCCCACTGACTCTACTGCCAAGATACAGTACA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCTTAGAGTAAATCCCACTGACTCTACTGCCAAGATACAGTACA  997

seq1  ACTCTCATTACTTTCAACACCTGTGAGCTCTCTGGAGCCGC  1031
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATTACTTTCAACACCTGTGAGCTCTCTGGAGCCGC  1038