BAC Information

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BAC

Clone NameB6Ng01-263N07
Chromosome15 (Build37)
Map Location 101,825,357 - 102,028,323
singlet/doubletdoublet
Overlap geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78
Downstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263N07.bB6Ng01-263N07.g
ACCGA067897GA067898
length1,053732
definitionB6Ng01-263N07.b B6Ng01-263N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,825,357 - 101,826,407)(102,027,595 - 102,028,323)
sequence
gaattccaccttcaggacccacagagtgaagatgagaaagttcctatagg
tggttctctagcctccacattgacatgcacacctacacccaactaataaa
taaataataaaatgtaaatgtttgaaagcacaaaggatgtgccttcacct
tcagattgacaagttgtcagaccacctcgctggagccaagaaaatgatgg
ttcagtggtgggtggggccattccctggccatgactgcccagctatgcat
agctctagtgtcctatttaaccccaaacctcaacccagcatcctaaaaat
ggatttggggtatcactctgtctctttgttcctcttcccaatgtggccat
gttaaagagtcctttctctgttttttttgtttttttttttttactactat
tattggtttctttaattgccttataaataaggataggcagacagacccaa
tctactggggctgttggagcccaggttctgactaacacaattatgactta
agatccttacttaggctccctggctctggctgagcatggtagaaggcttg
gaaggacaatgacagcctaaaagcccagatccacagagccaggtagctag
gaaggtggtaaggctgaagtcaggggactgggagataagtaggagtttcc
cataccatgtctgttcctacttcctgtccagtctgttcctacttcctgtc
cagtctgttcctacttcctgtccagtctgttcctacttcctgtctagtct
gttcctacttcctgtctagtctggtcttacttcctgttcagtctggtcga
tttcctgtcccctctgttccagttctcccaccagttttcaacaatctgaa
acagcaaaagcctcagaggccatgccaagggttgatgcacacctagccta
gggctgcatggaccatgtgactgtgggaaactccgtattggtggcaatgg
tgttggtgttgcctcacccagctgtcttcttatacttctcttcccttgct
ctaaccttgggacacttgcttgacagataaggcacctattccacacttcc
atg
gaattcacatccccagcaccacccataagccagacgcagtgacaggcagg
ttgattctggtgacttgctgtccatccagtgtacctgagacatggagttc
cgacctctgttagagtctgtctcaggaagtaaggtggagagcgatagggg
gagaccctgcacattgccttctacaagagcactcatgagcacagatcatg
ctaaagattagagatgtataaacacagattccgaatcacctaagattcat
tccaacaccacagaaatattttgaagtctcttccagtctttttaaaaagt
gcacagtgggtggaaaaatgccaaggatttgcccaggttcagttcccata
acccacatcacctgtaattccaagtttctgggaatttaaaactctagatt
ctttggatacttagatgttatgggtaccatgaacacatgtgccctccacc
cccaacccaggtagatctctgagtttgaggccagcctggtctacagagct
agttcaaggccagcaaggctacacaaagaaaccctgtattgaaaaccaaa
taaagaaaagaaaaatgcatagggatagatggggatgtaggtgagggagc
cccagctgtgtatggtgagacagacagactgataaataaacggctgtcag
atgctcatgaaaggatatggatgaactgaatccatttagtttggaggcag
gaaacttcatgggagttttgaaggtaggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101825357_101826407
seq2: B6Ng01-263N07.b_48_1096

seq1  GAATTCCACCTTCAGGACCCACAGAGTGAAGATGAGAAAGTTCCTATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTTCAGGACCCACAGAGTGAAGATGAGAAAGTTCCTATAGG  50

seq1  TGGTTCTCTAGCCTCCACATTGACATGCACACCTACACCCAACTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTAGCCTCCACATTGACATGCACACCTACACCCAACTAATAAA  100

seq1  TAAATAATAAAATGTAAATGTTTGAAAGCACAAAGGATGTGCCTTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAAAATGTAAATGTTTGAAAGCACAAAGGATGTGCCTTCACCT  150

seq1  TCAGATTGACAAGTTGTCAGACCACCTCGCTGGAGCCAAGAAAATGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGACAAGTTGTCAGACCACCTCGCTGGAGCCAAGAAAATGATGG  200

seq1  TTCAGTGGTGGGTGGGGCCATTCCCTGGCCATGACTGCCCAGCTATGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGTGGGTGGGGCCATTCCCTGGCCATGACTGCCCAGCTATGCAT  250

seq1  AGCTCTAGTGTCCTATTTAACCCCAAACCTCAACCCAGCATCCTAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGTGTCCTATTTAACCCCAAACCTCAACCCAGCATCCTAAAAAT  300

seq1  GGATTTGGGGTATCACTCTGTCTCTTTGTTCCTCTTCCCAATGTGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGGGTATCACTCTGTCTCTTTGTTCCTCTTCCCAATGTGGCCAT  350

seq1  GTTAAAGAGTCCTTTCTCTGTTTTTTTTGTTTTTTTTTTTTTACTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAGTCCTTTCTCTGTTTTTTTTGTTTTTTTTTTTTTACTACTAT  400

seq1  TATTGGTTTCTTTAATTGCCTTATAAATAAGGATAGGCAGACAGACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTCTTTAATTGCCTTATAAATAAGGATAGGCAGACAGACCCAA  450

seq1  TCTACTGGGGCTGTTGGAGCCCAGGTTCTGACTAACACAATTATGACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGGCTGTTGGAGCCCAGGTTCTGACTAACACAATTATGACTTA  500

seq1  AGATCCTTACTTAGGCTCCCTGGCTCTGGCTGAGCATGGTAGAAGGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTACTTAGGCTCCCTGGCTCTGGCTGAGCATGGTAGAAGGCTTG  550

seq1  GAAGGACAATGACAGCCTAAAAGCCCAGATCCACAGAGCCAGGTAGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAATGACAGCCTAAAAGCCCAGATCCACAGAGCCAGGTAGCTAG  600

seq1  GAAGGTGGTAAGGCTGAAGTCAGGGGACTGGGAGATAAGTAGGAGTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGTAAGGCTGAAGTCAGGGGACTGGGAGATAAGTAGGAGTTTCC  650

seq1  CATACCATGTCTGTTCCTACTTCCTGTCCAGTCTGTTCCTACTTCCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATGTCTGTTCCTACTTCCTGTCCAGTCTGTTCCTACTTCCTGTC  700

seq1  CAGTCTGTTCCTACTTCCTGTCCAGTCTGTTCCTACTTCCTGTCTAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTTCCTACTTCCTGTCCAGTCTGTTCCTACTTCCTGTCTAGTCT  750

seq1  GTTCCTACTTCCTGTCTAGTCTGGTCTTACTTCCTGTTCAGTCTGGTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACTTCCTGTCTAGTCTGGTCTTACTTCCTGTTCAGTCTGGTCGA  800

seq1  TTTCCTGTCCCCTCTGTTCCAGTTCT-CCACCAGTTTTCAACAAATCTGA  849
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TTTCCTGTCCCCTCTGTTCCAGTTCTCCCACCAGTTTTCAAC-AATCTGA  849

seq1  AACAGCAAAAGCCTCAGAGGCCATGCCAAGGGTTGATGCACACCTAGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAAGCCTCAGAGGCCATGCCAAGGGTTGATGCACACCTAGCCT  899

seq1  AGGGCTGCATGGACCATGTGACTGTGGGAAACTCCGTATTGGTGGCAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGCATGGACCATGTGACTGTGGGAAACTCCGTATTGGTGGCAATG  949

seq1  GTGTTGGTGGTGCCTCACCCAGCTGTCTCTTAATAC-TCTCCTCCCCTGC  998
      ||||||||| ||||||||||||||||||  | |||| |||| |||| |||
seq2  GTGTTGGTGTTGCCTCACCCAGCTGTCTTCTTATACTTCTCTTCCCTTGC  999

seq1  TCTAAACCTTGGGACACTTGCTTGACAGAT-AGGCAAACCTATTCACACA  1047
      ||| |||||||||||||||||||||||||| ||||  |||||||| ||||
seq2  TCT-AACCTTGGGACACTTGCTTGACAGATAAGGC--ACCTATTC-CACA  1045

seq1  CTTC  1051
      ||||
seq2  CTTC  1049

seq1: chr15_102027595_102028323
seq2: B6Ng01-263N07.g_73_804 (reverse)

seq1  AGTTCCTACCTTCAAGACTGCCATGAAGTTTCTTGCCTCCAAACTGAATG  50
      ||||||||||||||| ||| |||||||||||| |||||||||||| ||||
seq2  AGTTCCTACCTTCAAAACTCCCATGAAGTTTCCTGCCTCCAAACTAAATG  50

seq1  GATTCAGTTCATCCATATCC-TTCATGAGCATCTGACAGCCG-TTATTTA  98
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GATTCAGTTCATCCATATCCTTTCATGAGCATCTGACAGCCGTTTATTTA  100

seq1  TCAGTCTGTCTGTCTCACCATACACAGCT-GGGCTCCCTCACCTACATCC  147
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGTCTGTCTGTCTCACCATACACAGCTGGGGCTCCCTCACCTACATCC  150

seq1  CCATCTATCCCTATGCATTTTTCTTTTCTTTATTTGGTTTTCAATACAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTATCCCTATGCATTTTTCTTTTCTTTATTTGGTTTTCAATACAGG  200

seq1  GTTTCTTTGTGTAGCCTTGCTGGCCTTGAACTAGCTCTGTAGACCAGGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTGTAGCCTTGCTGGCCTTGAACTAGCTCTGTAGACCAGGCT  250

seq1  GGCCTCAAACTCAGAGATCTACCTGGGTTGGGGGTGGAGGGCACATGTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAACTCAGAGATCTACCTGGGTTGGGGGTGGAGGGCACATGTGT  300

seq1  TCATGGTACCCATAACATCTAAGTATCCAAAGAATCTAGAGTTTTAAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTACCCATAACATCTAAGTATCCAAAGAATCTAGAGTTTTAAATT  350

seq1  CCCAGAAACTTGGAATTACAGGTGATGTGGGTTATGGGAACTGAACCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACTTGGAATTACAGGTGATGTGGGTTATGGGAACTGAACCTGG  400

seq1  GCAAATCCTTGGCATTTTTCCACCCACTGTGCACTTTTTAAAAAGACTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCTTGGCATTTTTCCACCCACTGTGCACTTTTTAAAAAGACTGG  450

seq1  AAGAGACTTCAAAATATTTCTGTGGTGTTGGAATGAATCTTAGGTGATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTTCAAAATATTTCTGTGGTGTTGGAATGAATCTTAGGTGATTC  500

seq1  GGAATCTGTGTTTATACATCTCTAATCTTTAGCATGATCTGTGCTCATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGTGTTTATACATCTCTAATCTTTAGCATGATCTGTGCTCATGA  550

seq1  GTGCTCTTGTAGAAGGCAATGTGCAGGGTCTCCCCCTATCGCTCTCCACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTGTAGAAGGCAATGTGCAGGGTCTCCCCCTATCGCTCTCCACC  600

seq1  TTACTTCCTGAGACAGACTCTAACAGAGGTCGGAACTCCATGTCTCAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTGAGACAGACTCTAACAGAGGTCGGAACTCCATGTCTCAGGT  650

seq1  ACACTGGATGGACAGCAAGTCACCAGAATCAACCTGCCTGTCACTGCGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGATGGACAGCAAGTCACCAGAATCAACCTGCCTGTCACTGCGTC  700

seq1  TGGCTTATGGGTGGTGCTGGGGATGTGAATTC  729
      ||||||||||||||||||||||||||||||||
seq2  TGGCTTATGGGTGGTGCTGGGGATGTGAATTC  732