BAC Information

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BAC

Clone NameB6Ng01-264O13
Chromosome15 (Build37)
Map Location 102,231,551 - 102,379,612
singlet/doubletdoublet
Overlap geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7
Upstream geneKrt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264O13.bB6Ng01-264O13.g
ACCGA068694GA068695
length6351,126
definitionB6Ng01-264O13.b B6Ng01-264O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,231,551 - 102,232,185)(102,378,478 - 102,379,612)
sequence
gaattcactgagatcaggttacttctgcctcctagggcagggattacagg
attaaaggtgtttctaccacaaccactcctggggctttaatttttttaag
gcctgtatttggggaaaatagccaggaactctagatccttgtacttctga
ctcacaggtaaatgacatcatggaaggcttacacactcctgtggctctaa
cccaggggtcttactctataagagtaggctggtcttgaaccgtctcagct
acctgttttcttgaccttgactaccaacactccctcatctggtgtttctt
cttagctaggcaggccatcagtatcaccatagccgccagctgattgcagt
actgaatgcctggctatcactaggcaccactcattgttgatgctagcagg
agtcacagtgcttgtctggttaggaaacaaagatagccaacttacaatgg
gtcttttaaaataatgattacaaacactgtctgcatccagttctagggtt
ctcataagtttcctagattttcatactgaaaagcctggtttgcttcaatt
ctttttgcttttttaggcatttatctctgcccacccacacacaccctctc
ttttcttttctttttttttgggggtgggggtgggg
gaattcaagcaggtcagaaagcaggagctgatacagaggccatggagaga
tgttacttactggcttgcttcccctggcttgctcagcctgctcgctctct
ctctcttttttttgaggcagagtttctctgtatagccctggctgtcctgg
gactcactttatagaccaggctggactcgaactcagaaatccgcctgcct
ctgcctcccgagtgctggtattaaaggcgtgcaccaccaagcccagctca
gcctgctctcttatagaacccaagactgccagcccagagatggtcccacc
cacaaggatactaatttcccccttgatcactaattgagaaaatgccccac
agctggatctcatggaggtacttccccaactgaagctcctttctctgtga
taacaccagcctgtgtcaagttgacacacaaaaccagccagtacagctgg
cctcaagttctcatcatcctgctttttattattattattattatttttag
ttttggtttttccagacagggtttctctgtgtagtcctggctgtcctgga
actggggtgcgccaccactgcccaaccatcatcctgcttttgcttcctga
gttctgggattgataatgaagctggctccgggaatttattcttacgtacc
taagaaaatgagttgttgaaattatttcctaaaataaaacattttatttg
tggtagagatgtttaatcatcccaaattcctaatagagttaactcatagc
cattgaattcaattaatttgaaaggtataaaggtatttctagactgtggg
gcttgatgtgtagctcagtagagcactttcctggcaggtccaaaggttct
attaatccctagcaccagaaaaacaccaaaggctttgtaggctaaagcaa
gtagactagggcttgcctgatgtgtctaaagcatttttgttttatcccta
agaaaacagactcatttctcaccatctgtttttccatgttcaagagatgt
caaggttttatagtgctactctataccgtcccaatgagagactgtaaaaa
aacattctctgaatggtacaagagcatagcaaggttcaggctgtgatatt
aaggccttgaagatgactcatggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102231551_102232185
seq2: B6Ng01-264O13.b_50_684

seq1  GAATTCACTGAGATCAGGTTACTTCTGCCTCCTAGGGCAGGGATTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGATCAGGTTACTTCTGCCTCCTAGGGCAGGGATTACAGG  50

seq1  ATTAAAGGTGTTTCTACCACAACCACTCCTGGGGCTTTAATTTTTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTTTCTACCACAACCACTCCTGGGGCTTTAATTTTTTTAAG  100

seq1  GCCTGTATTTGGGGAAAATAGCCAGGAACTCTAGATCCTTGTACTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTATTTGGGGAAAATAGCCAGGAACTCTAGATCCTTGTACTTCTGA  150

seq1  CTCACAGGTAAATGACATCATGGAAGGCTTACACACTCCTGTGGCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGTAAATGACATCATGGAAGGCTTACACACTCCTGTGGCTCTAA  200

seq1  CCCAGGGGTCTTACTCTATAAGAGTAGGCTGGTCTTGAACCGTCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGTCTTACTCTATAAGAGTAGGCTGGTCTTGAACCGTCTCAGCT  250

seq1  ACCTGTTTTCTTGACCTTGACTACCAACACTCCCTCATCTGGTGTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTCTTGACCTTGACTACCAACACTCCCTCATCTGGTGTTTCTT  300

seq1  CTTAGCTAGGCAGGCCATCAGTATCACCATAGCCGCCAGCTGATTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTAGGCAGGCCATCAGTATCACCATAGCCGCCAGCTGATTGCAGT  350

seq1  ACTGAATGCCTGGCTATCACTAGGCACCACTCATTGTTGATGCTAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGCCTGGCTATCACTAGGCACCACTCATTGTTGATGCTAGCAGG  400

seq1  AGTCACAGTGCTTGTCTGGTTAGGAAACAAAGATAGCCAACTTACAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGTGCTTGTCTGGTTAGGAAACAAAGATAGCCAACTTACAATGG  450

seq1  GTCTTTTAAAATAATGATTACAAACACTGTCTGCATCCAGTTCTAGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAAAATAATGATTACAAACACTGTCTGCATCCAGTTCTAGGGTT  500

seq1  CTCATAAGTTTCCTAGATTTTCATACTGAAAAGCCTGGTTTGCTTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGTTTCCTAGATTTTCATACTGAAAAGCCTGGTTTGCTTCAATT  550

seq1  CTTTTTGCTTTTTTAGGCATTTATCTCTGCCCACCCACACACACCCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTTTTTTAGGCATTTATCTCTGCCCACCCACACACACCCTCTC  600

seq1  TTTTCTTTTCTTTTTTTTTGGGGGTGGGGGTGGGG  635
      |||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTTTTTTGGGGGTGGGGGTGGGG  635

seq1: chr15_102378478_102379612
seq2: B6Ng01-264O13.g_68_1193 (reverse)

seq1  TAACCACTGAGTCATCTCTCCAGCCCCTAAATATCACAGCCTTGACCCTT  50
      |||||| |||||||||| || ||  ||| |||||||||||| ||| ||||
seq2  TAACCA-TGAGTCATCT-TCAAG-GCCTTAATATCACAGCC-TGAACCTT  46

seq1  TGCCTATTGGCCTTCCTTGTA-CAATCAGAGAATG-TTTTTTACAGTCTT  98
         ||||  ||    |||||| || |||||||||| |||||||||||| |
seq2  --GCTAT--GC---TCTTGTACCATTCAGAGAATGTTTTTTTACAGTC-T  88

seq1  CTCATTGGGGACGGTATAGAGTAGCACTATAAAACCTTGACATTCTCTTG  148
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCATT-GGGACGGTATAGAGTAGCACTATAAAACCTTGACA-TCTCTTG  136

seq1  AACATGGAAAAACAGATGGTGAGAAATGAGTCTGTTTTC-TAGGGATTAA  197
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  AACATGGAAAAACAGATGGTGAGAAATGAGTCTGTTTTCTTAGGGATAAA  186

seq1  ACAAAAATGCTTTAGACACATCAGGCAAGCCCTAGTCTACTTGCCTTAGC  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAAAAATGCTTTAGACACATCAGGCAAGCCCTAGTCTACTTGCTTTAGC  236

seq1  CTACAAAGCC-TTGGTGTTTTTCTGGTGCTAGGGATTAATAGAACC-TTG  295
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  CTACAAAGCCTTTGGTGTTTTTCTGGTGCTAGGGATTAATAGAACCTTTG  286

seq1  GACCTGCCAGGAAAGTGCTCTACTGAGCTACACATCAAGCCCCACAGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCAGGAAAGTGCTCTACTGAGCTACACATCAAGCCCCACAGTCT  336

seq1  AGAAATACCTTTATACCTTTCAAATTAATTGAATTCAATGGCTATGAGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACCTTTATACCTTTCAAATTAATTGAATTCAATGGCTATGAGTT  386

seq1  AACTCTATTAGGAATTTGGGATGATTAAACATCTCTACCACAAATAAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATTAGGAATTTGGGATGATTAAACATCTCTACCACAAATAAAAT  436

seq1  GTTTTATTTTAGGAAATAATTTCAACAACTCATTTTCTTAGGTACGTAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTAGGAAATAATTTCAACAACTCATTTTCTTAGGTACGTAAG  486

seq1  AATAAATTCCCGGAGCCAGCTTCATTATCAATCCCAGAACTCAGGAAGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCCCGGAGCCAGCTTCATTATCAATCCCAGAACTCAGGAAGCA  536

seq1  AAAGCAGGATGATGGTTGGGCAGTGGTGGCGCACCCCAGTTCCAGGACAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGATGATGGTTGGGCAGTGGTGGCGCACCCCAGTTCCAGGACAG  586

seq1  CCAGGACTACACAGAGAAACCCTGTCTGGAAAAACCAAAACTAAAAATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTACACAGAGAAACCCTGTCTGGAAAAACCAAAACTAAAAATAA  636

seq1  TAATAATAATAATAAAAAGCAGGATGATGAGAACTTGAGGCCAGCTGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAAAAAGCAGGATGATGAGAACTTGAGGCCAGCTGTAC  686

seq1  TGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGTGTTATCACAGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGTGTTATCACAGAGAA  736

seq1  AGGAGCTTCAGTTGGGGAAGTACCTCCATGAGATCCAGCTGTGGGGCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTCAGTTGGGGAAGTACCTCCATGAGATCCAGCTGTGGGGCATT  786

seq1  TTCTCAATTAGTGATCAAGGGGGAAATTAGTATCCTTGTGGGTGGGACCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTAGTGATCAAGGGGGAAATTAGTATCCTTGTGGGTGGGACCA  836

seq1  TCTCTGGGCTGGCAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCTGGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTGGCAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCTGGGC  886

seq1  TTGGTGGTGCACGCCTTTAATACCAGCACTCGGGAGGCAGAGGCAGGCGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTGCACGCCTTTAATACCAGCACTCGGGAGGCAGAGGCAGGCGG  936

seq1  ATTTCTGAGTTCGAGTCCAGCCTGGTCTATAAAGTGAGTCCCAGGACAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGTCCAGCCTGGTCTATAAAGTGAGTCCCAGGACAGC  986

seq1  CAGGGCTATACAGAGAAACTCTGCCTCAAAAAAAAGAGAGAGAGAGCGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTATACAGAGAAACTCTGCCTCAAAAAAAAGAGAGAGAGAGCGAG  1036

seq1  CAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGTAACATCTCTCCATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGTAACATCTCTCCATG  1086

seq1  GCCTCTGTATCAGCTCCTGCTTTCTGACCTGCTTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTATCAGCTCCTGCTTTCTGACCTGCTTGAATTC  1126