BAC Information

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BAC

Clone NameB6Ng01-264O15
Chromosome15 (Build37)
Map Location 13,380,688 - 13,527,543
singlet/doubletdoublet
Overlap geneLOC239338
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264O15.bB6Ng01-264O15.g
ACCGA068698GA068699
length3481,014
definitionB6Ng01-264O15.b B6Ng01-264O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,527,196 - 13,527,543)(13,380,688 - 13,381,656)
sequence
actttttatgtagacagactgacttctaaagagatggatattattttaat
gtagcatgcagaagcttaagaattctctctcatttggtttgacgtgttca
tctcactgactataacagaaaaccagactggaggaagttacttagaaagt
ggtgataagtggtaatcagcccactggaagaaattctgtccctaatctga
gcaaagtatttaataattttaatactagagcaagattccagtttacactt
tgtctggcaagaagaggtaaaacataaaggaagcaggagtgggtgggtgg
gtgagggagcaccctcatagaagcaggggtgggggatgggatacgggg

gaattctattggtttggtaatgtctttttaactgtttctggtgctgggag
tttggaaaaatgtgttctgattggtaggtcttcatatacagccatcaaag
tgaattaatatgcaaaatggagacatcataaaagaagaaaacagcatcat
taactgatatcaagatttggtttgaaagcccatgaaaactaatggctaca
agagccatgaaagtcattctttatctagctttccttagatttaaagaagt
taatgacgcttcatcattcttttgacccagtttctgtctgttatcattct
ttcatttgtgcttatgattaccaacagctcctgatgtctctagaacatac
taaaccagtgaattaaaaacataggatgaagtctcatctgcactaatggg
aaatgaccttcagctgagagccttatactcctttgtacctcagtgttctt
taacaacttttaaaggaataattttgagaataaaatgcaatgacatcacg
ctctgcctttttctttcctccctccaacccctctcatgtacttgcctcac
attctcaaattcatgtctctctctctctctctctctctctctctctctct
ctctcccttcctcctctcctctgtctttctgtatacatatattcatattt
acaacctcttaagtcagtataatgttatttataacattacttttatgtat
ataacttcagagacaaccatgatattgggtaaccagttagcagctgtaca
cttaccagagggagactatttctcctgctcctagcagttatttattgcct
atagttctctgtcaacggttaagaaagccaagtagatttctccctttcat
attaaccaatttatcggtgtcatctttgttcatgtcttgtttaggcactg
tttttgaaacttcaataaaaagtagctccactggcattagtagaagacat
attttacagcagacattctgtttcctctgggcttttacaatcctctggct
ccatttgtctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13527196_13527543
seq2: B6Ng01-264O15.b_52_399 (reverse)

seq1  CCCCCTATCCCATCCCCCACCCCTGCTTCTATGAGGGTGCTCCCTCACCC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTATCCCATCCCCCACCCCTGCTTCTATGAGGGTGCTCCCTCACCC  50

seq1  ACCCACCCACTCCTGCTTCCTTTATGTTTTACCTCTTCTTGCCAGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCACTCCTGCTTCCTTTATGTTTTACCTCTTCTTGCCAGACAAA  100

seq1  GTGTAAACTGGAATCTTGCTCTAGTATTAAAATTATTAAATACTTTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACTGGAATCTTGCTCTAGTATTAAAATTATTAAATACTTTGCTC  150

seq1  AGATTAGGGACAGAATTTCTTCCAGTGGGCTGATTACCACTTATCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGGACAGAATTTCTTCCAGTGGGCTGATTACCACTTATCACCAC  200

seq1  TTTCTAAGTAACTTCCTCCAGTCTGGTTTTCTGTTATAGTCAGTGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTAACTTCCTCCAGTCTGGTTTTCTGTTATAGTCAGTGAGATG  250

seq1  AACACGTCAAACCAAATGAGAGAGAATTCTTAAGCTTCTGCATGCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTCAAACCAAATGAGAGAGAATTCTTAAGCTTCTGCATGCTACAT  300

seq1  TAAAATAATATCCATCTCTTTAGAAGTCAGTCTGTCTACATAAAAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATATCCATCTCTTTAGAAGTCAGTCTGTCTACATAAAAAGT  348


seq1: chr15_13380688_13381656
seq2: B6Ng01-264O15.g_68_1036

seq1  GAATTCTATTGGTTTGGTAATGTCTTTTTAACTGTTTCTGGTGCTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGTTTGGTAATGTCTTTTTAACTGTTTCTGGTGCTGGGAG  50

seq1  TTTGGAAAAATGTGTTCTGATTGGTAGGTCTTCATATACAGCCATCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAATGTGTTCTGATTGGTAGGTCTTCATATACAGCCATCAAAG  100

seq1  TGAATTAATATGCAAAATGGAGACATCATAAAAGAAGAAAACAGCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAATATGCAAAATGGAGACATCATAAAAGAAGAAAACAGCATCAT  150

seq1  TAACTGATATCAAGATTTGGTTTGAAAGCCCATGAAAACTAATGGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATATCAAGATTTGGTTTGAAAGCCCATGAAAACTAATGGCTACA  200

seq1  AGAGCCATGAAAGTCATTCTTTATCTAGCTTTCCTTAGATTTAAAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATGAAAGTCATTCTTTATCTAGCTTTCCTTAGATTTAAAGAAGT  250

seq1  TAATGACGCTTCATCATTCTTTTGACCCAGTTTCTGTCTGTTATCATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACGCTTCATCATTCTTTTGACCCAGTTTCTGTCTGTTATCATTCT  300

seq1  TTCATTTGTGCTTATGATTACCAACAGCTCCTGATGTCTCTAGAACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTGCTTATGATTACCAACAGCTCCTGATGTCTCTAGAACATAC  350

seq1  TAAACCAGTGAATTAAAAACATAGGATGAAGTCTCATCTGCACTAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGTGAATTAAAAACATAGGATGAAGTCTCATCTGCACTAATGGG  400

seq1  AAATGACCTTCAGCTGAGAGCCTTATACTCCTTTGTACCTCAGTGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTTCAGCTGAGAGCCTTATACTCCTTTGTACCTCAGTGTTCTT  450

seq1  TAACAACTTTTAAAGGAATAATTTTGAGAATAAAATGCAATGACATCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTTTTAAAGGAATAATTTTGAGAATAAAATGCAATGACATCACG  500

seq1  CTCTGCCTTTTTCTTTCCTCCCTCCAACCCCTCTCATGTACTTGCCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTTTTCTTTCCTCCCTCCAACCCCTCTCATGTACTTGCCTCAC  550

seq1  ATTCTCAAATTCATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAATTCATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  600

seq1  CTCTCCCTTCCTCCTCTCCTCTGTCTTTCTGTATACATATATTCATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCCTCCTCTCCTCTGTCTTTCTGTATACATATATTCATATTT  650

seq1  ACAACCTCTTAAGTCAGTATAATGTTATTTATAACATTACTTTTATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTCTTAAGTCAGTATAATGTTATTTATAACATTACTTTTATGTAT  700

seq1  ATAACTTCAGAGACAACCATGATATTGGGTAACCAGTGAGCAGCTGTACA  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAACTTCAGAGACAACCATGATATTGGGTAACCAGTTAGCAGCTGTACA  750

seq1  CTTACCAGAGGGAGACTATTTCTCCTGCTCCTAGCAGTTATTTATTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAGAGGGAGACTATTTCTCCTGCTCCTAGCAGTTATTTATTGCCT  800

seq1  ATAGTTCTCTGTCAACGGTTAAGAAAGCCAAGTAGATTTCTCCCTTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTCTGTCAACGGTTAAGAAAGCCAAGTAGATTTCTCCCTTTCAT  850

seq1  ATTAACCAATTTATCGGTGTCATCTTTGTTCATGTCTTGTTTAGGCACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTAACCAATTTATCGGTGTCATCTTTGTTCATGTCTTGTTTAGGCA-CT  899

seq1  GTTTTTGAAACTTCA--TAAAAGTAGCTCCACTGGCATTAGTAGAAGACA  948
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GTTTTTGAAACTTCAATAAAAAGTAGCTCCACTGGCATTAGTAGAAGACA  949

seq1  TAATTTTACAGCAGACATTCT  969
      | |||||||||||||||||||
seq2  T-ATTTTACAGCAGACATTCT  969


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