BAC Information

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BAC

Clone NameB6Ng01-265B20
Chromosome15 (Build37)
Map Location 102,372,246 - 102,496,912
singlet/doubletdoublet
Overlap geneAtf7, LOC100043600, Atp5g2
Upstream geneKrt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneCalcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265B20.bB6Ng01-265B20.g
ACCGA068850GA068851
length6781,027
definitionB6Ng01-265B20.b B6Ng01-265B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,372,246 - 102,372,923)(102,495,889 - 102,496,912)
sequence
gaattcctgttcttcctggctctattccccccaattgctggaacttttga
gattgctgctcttcctgtcttatcctaagcagctcggattgcaggcctgt
gccataaggcccaactacttggtctctttccttcccttcctctcccttct
ttccttctttgatacagtgtcaaatccactggaacatgatggttatgaac
caccatgtaggtgctgggaactgaactaaagtcctctgcaagagcataag
tggctcttgactgctgagccatttctccagcctcctgacacaggatctta
tttctgtagtccaatttaatccaaaccccactatggagcccaggttagcc
tggaagtccctttaaaatttgtatctcaaactcctgatcatgggagttac
agctgtgcaatgttacacctagtgctttttgtttctttacagtatggagt
cttgtaggcaaggacatcagaattagggagagtgacaggggagttatgtg
attttatttctccaccagccaaatgaaccaattcaagctagattaaagta
tgaaagcagatattgggaaaccactctcaggtggcagagttcactcatcc
caaagaatgaggccagggaaatcaccatggggagctgggggagggactgg
tgagagagagagaaagaagggggtggtg
gaattcagaatttgttgatacaaggaataatgtgacacagtgcacgtgtg
aagtcccagtaccagggacactaaagcaggagggttgcttagcctggggc
ttcaaggtcagcctgggcaacatagcaagatttctgtgtcttttaggatt
tgttttgtttttaaagattttttttgttgttgttttgtagaaaattgtct
catgtgtatgagtgttttgcttacatatatgatatgtgtgcctagtatgg
tatgcaaggagatcagaagagtgctggatctgcagttacggatgagtgtg
agacactgtgtgggtgttgggaattgaacctgggtctcttctaatgccct
taacctctaaggcatctctccagtccagttgttgttgtttttgttttgag
acagggtctctgtgtagccctggctagcctggaacttgtagagatccgcc
ttcctctgcttcctaagtctagattaaaggtgcctgcccgtctcaaaaaa
aaaaaaaaaaaaaaaaaatagaaagactgattcaaggttcagagaacatc
ctactgtgtgcaatggaatgctctaaaagtcacctccacagccttcctga
cctccctgcccttgtcattccactagatcaggagcacctctctcaggagc
acctctcagctgctgagtcgtccgctgtctgcagtggagttgaagcgacc
acagatgccaacagatgaggtaggtaccttaaggtggagttggagctatg
gtttggtgaggaggagtaaagagggttacctccccggaccagtaggggga
gtgctgaggataatcaccacaggctggcattcatgaaggatcagaacttt
gctgtctctaggtagaaaatggaggcagtgaaatacctctgtgtgggcag
ctgcatctggtagttcctgcattggtggactctgtcagctccattaataa
gcctgacttgctgaccaggtattggggtcaagaacatgctcatgctcttc
ataacctttggatgaccatactgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102372246_102372923
seq2: B6Ng01-265B20.b_45_722

seq1  GAATTCCTGTTCTTCCTGGCTCTATTCCCCCCAATTGCTGGAACTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCTTCCTGGCTCTATTCCCCCCAATTGCTGGAACTTTTGA  50

seq1  GATTGCTGCTCTTCCTGTCTTATCCTAAGCAGCTCGGATTGCAGGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGCTCTTCCTGTCTTATCCTAAGCAGCTCGGATTGCAGGCCTGT  100

seq1  GCCATAAGGCCCAACTACTTGGTCTCTTTCCTTCCCTTCCTCTCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGGCCCAACTACTTGGTCTCTTTCCTTCCCTTCCTCTCCCTTCT  150

seq1  TTCCTTCTTTGATACAGTGTCAAATCCACTGGAACATGATGGTTATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTGATACAGTGTCAAATCCACTGGAACATGATGGTTATGAAC  200

seq1  CACCATGTAGGTGCTGGGAACTGAACTAAAGTCCTCTGCAAGAGCATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTAGGTGCTGGGAACTGAACTAAAGTCCTCTGCAAGAGCATAAG  250

seq1  TGGCTCTTGACTGCTGAGCCATTTCTCCAGCCTCCTGACACAGGATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGACTGCTGAGCCATTTCTCCAGCCTCCTGACACAGGATCTTA  300

seq1  TTTCTGTAGTCCAATTTAATCCAAACCCCACTATGGAGCCCAGGTTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGTCCAATTTAATCCAAACCCCACTATGGAGCCCAGGTTAGCC  350

seq1  TGGAAGTCCCTTTAAAATTTGTATCTCAAACTCCTGATCATGGGAGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCCCTTTAAAATTTGTATCTCAAACTCCTGATCATGGGAGTTAC  400

seq1  AGCTGTGCAATGTTACACCTAGTGCTTTTTGTTTCTTTACAGTATGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCAATGTTACACCTAGTGCTTTTTGTTTCTTTACAGTATGGAGT  450

seq1  CTTGTAGGCAAGGACATCAGAATTAGGGAGAGTGACAGGGGAGTTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGCAAGGACATCAGAATTAGGGAGAGTGACAGGGGAGTTATGTG  500

seq1  ATTTTATTTCTCCACCAGCCAAATGAACCAATTCAAGCTAGATTAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCTCCACCAGCCAAATGAACCAATTCAAGCTAGATTAAAGTA  550

seq1  TGAAAGCAGATATTGGGAAACCACTCTCAGGTGGCAGAGTTCACTCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGATATTGGGAAACCACTCTCAGGTGGCAGAGTTCACTCATCC  600

seq1  CAAAGAATGAGGCCAGGGAAATCACCATGGGGAGCTGGGGGAGGGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATGAGGCCAGGGAAATCACCATGGGGAGCTGGGGGAGGGACTGG  650

seq1  TGAGAGAGAGAGAAAGAAGGGGGTGGTG  678
      ||||||||||||||||||||||||||||
seq2  TGAGAGAGAGAGAAAGAAGGGGGTGGTG  678

seq1: chr15_102495889_102496912
seq2: B6Ng01-265B20.g_66_1092 (reverse)

seq1  AACCCAGTATGGTC-TACAAGTGTTATG-AGA-CATGAGCCTGTTCTTGA  47
      |||||||||||||| | |||  |||||| ||| ||||||| |||||||||
seq2  AACCCAGTATGGTCATCCAAAGGTTATGAAGAGCATGAGCATGTTCTTGA  50

seq1  CCCCCAATACCTGGTCAGCAGACCAGGCCTAATAATGGGAGCTGACAGAG  97
       |||||||||||||||||||   ||||| || |||| |||||||||||| 
seq2  -CCCCAATACCTGGTCAGCAAGTCAGGCTTATTAAT-GGAGCTGACAGA-  97

seq1  GTCCACCAAAGCAGGAACTACCAGATGCAACTGCCAACACAGA-GTA-TT  145
      ||||||||| ||||||||||||||||||| ||||| ||||||| ||| ||
seq2  GTCCACCAATGCAGGAACTACCAGATGCAGCTGCCCACACAGAGGTATTT  147

seq1  CACTGCCTTCCATTTCTACCTAGAG-CAGCAAAGGTCTGATCCTTCCTGA  194
      |||||||| |  ||||||||||||| |||||||| ||||||||||| |||
seq2  CACTGCCTCCATTTTCTACCTAGAGACAGCAAAGTTCTGATCCTTCATGA  197

seq1  ATGCCAGCCTGTGGTGATTATCCTCAGCACTCCCCCTACTGGTCCGGGGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCCTGTGGTGATTATCCTCAGCACTCCCCCTACTGGTCCGGGGA  247

seq1  GGTAACCCTCTTTACTCCTCCTCACCAAACCATAGCTCCAACTCCACCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCCTCTTTACTCCTCCTCACCAAACCATAGCTCCAACTCCACCTT  297

seq1  AAGGTACCTACCTCATCTGTTGGCATCTGTGGTCGCTTCAACTCCACTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCTACCTCATCTGTTGGCATCTGTGGTCGCTTCAACTCCACTGC  347

seq1  AGACAGCGGACGACTCAGCAGCTGAGAGGTGCTCCTGAGAGAGGTGCTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCGGACGACTCAGCAGCTGAGAGGTGCTCCTGAGAGAGGTGCTCC  397

seq1  TGATCTAGTGGAATGACAAGGGCAGGGAGGTCAGGAAGGCTGTGGAGGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGTGGAATGACAAGGGCAGGGAGGTCAGGAAGGCTGTGGAGGTG  447

seq1  ACTTTTAGAGCATTCCATTGCACACAGTAGGATGTTCTCTGAACCTTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGAGCATTCCATTGCACACAGTAGGATGTTCTCTGAACCTTGAA  497

seq1  TCAGTCTTTCTATTTTTTTTTTTTTTTTTTTTTTTTGAGACGGGCAGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTCTATTTTTTTTTTTTTTTTTTTTTTTTGAGACGGGCAGGCA  547

seq1  CCTTTAATCTAGACTTAGGAAGCAGAGGAAGGCGGATCTCTACAAGTTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCTAGACTTAGGAAGCAGAGGAAGGCGGATCTCTACAAGTTCC  597

seq1  AGGCTAGCCAGGGCTACACAGAGACCCTGTCTCAAAACAAAAACAACAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCAGGGCTACACAGAGACCCTGTCTCAAAACAAAAACAACAAC  647

seq1  AACTGGACTGGAGAGATGCCTTAGAGGTTAAGGGCATTAGAAGAGACCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACTGGAGAGATGCCTTAGAGGTTAAGGGCATTAGAAGAGACCCA  697

seq1  GGTTCAATTCCCAACACCCACACAGTGTCTCACACTCATCCGTAACTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTCCCAACACCCACACAGTGTCTCACACTCATCCGTAACTGCA  747

seq1  GATCCAGCACTCTTCTGATCTCCTTGCATACCATACTAGGCACACATATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCACTCTTCTGATCTCCTTGCATACCATACTAGGCACACATATC  797

seq1  ATATATGTAAGCAAAACACTCATACACATGAGACAATTTTCTACAAAACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTAAGCAAAACACTCATACACATGAGACAATTTTCTACAAAACA  847

seq1  ACAACAAAAAAAATCTTTAAAAACAAAACAAATCCTAAAAGACACAGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAAAATCTTTAAAAACAAAACAAATCCTAAAAGACACAGAAA  897

seq1  TCTTGCTATGTTGCCCAGGCTGACCTTGAAGCCCCAGGCTAAGCAACCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTATGTTGCCCAGGCTGACCTTGAAGCCCCAGGCTAAGCAACCCT  947

seq1  CCTGCTTTAGTGTCCCTGGTACTGGGACTTCACACGTGCACTGTGTCACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTAGTGTCCCTGGTACTGGGACTTCACACGTGCACTGTGTCACA  997

seq1  TTATTCCTTGTATCAACAAATTCTGAATTC  1024
      ||||||||||||||||||||||||||||||
seq2  TTATTCCTTGTATCAACAAATTCTGAATTC  1027