MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-265H04
Chromosome	15 (Build37)
Map Location	96,835,905 - 96,984,376
singlet/doublet	doublet
Overlap gene	Slc38a4
Upstream gene	D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651
Downstream gene	Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8
Link	Open Mouse BAC browser

Click to get alignment info.

name	D030018L15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:402773 MGI:3028082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC100043335 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs

name	EG667869 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667869 MGI:3647330
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 ESTs, 2 Proteins pseudo : _no_value

name	LOC667874 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 4 Proteins pseudo : _no_value

name	LOC667894 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Arid2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77044 MGI:1924294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfrs2ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72193 MGI:1919443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc38a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105727 MGI:2145895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc38a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67760 MGI:1915010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667941 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667941
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC546651 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546651
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Slc38a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69354 MGI:1916604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amigo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105827 MGI:2145995
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC038822 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239647 MGI:2446270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins pseudo : _no_value

name	LOC100042774 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042774
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	D15Ertd682e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71919 MGI:1277218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pp11r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19011 MGI:97746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rapgef3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223864 MGI:2441741
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930570C03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67739 MGI:1914989
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdac7a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56233 MGI:1891835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vdr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22337 MGI:103076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem106c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380967 MGI:1196384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col2a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12824 MGI:88452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Senp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223870 MGI:2445054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pfkm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18642 MGI:97548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78541 MGI:1925791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043335 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266804 GeneID:100043335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs product : hypothetical protein LOC100043335 transcript_id : XM_001480581.1

name	Arid2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624795 GeneID:77044 MGI:1924294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT rich interactive domain 2 (Arid-rfx like) transcript_id : NM_175251.2

name	Sfrs2ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647276 GeneID:72193 MGI:1919443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 2, interacting protein transcript_id : NM_028148.2

name	Slc38a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381438 GeneID:105727 MGI:2145895
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 38, member 1 transcript_id : NM_134086.3

name	Slc38a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543734 GeneID:67760 MGI:1915010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 38, member 2 transcript_id : NM_175121.3

name	Slc38a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365242 GeneID:69354 MGI:1916604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 38, member 4 transcript_id : NM_027052.3

name	Amigo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66392590 GeneID:105827 MGI:2145995
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adhesion molecule with Ig like domain 2 transcript_id : NM_178114.3

name	BC038822 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374053 GeneID:239647 MGI:2446270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC038822 transcript_id : NM_172293.3

name	D15Ertd682e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374453 GeneID:71919 MGI:1277218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 15, ERATO Doi 682, expressed transcript_id : NM_028003.2

name	Pp11r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366558 GeneID:19011 MGI:97746
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : placental protein 11 related transcript_id : NM_008902.2

name	Rapgef3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450060 GeneID:223864 MGI:2441741
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rap guanine nucleotide exchange factor (GEF) 3 transcript_id : NM_144850.1

name	4930570C03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368946 GeneID:67739 MGI:1914989
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930570C03 gene transcript_id : NM_026353.3

name	Hdac7a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254547 GeneID:56233 MGI:1891835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 7A transcript_id : NM_019572.2

name	Vdr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227202 GeneID:22337 MGI:103076
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vitamin D receptor transcript_id : NM_009504.3

name	Tmem106c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41235746 GeneID:380967 MGI:1196384
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 106C transcript_id : NM_201359.1

name	Col2a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70980519 GeneID:12824 MGI:88452
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type II, alpha 1 transcript_id : NM_031163.2

name	Senp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353113 GeneID:223870 MGI:2445054
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SUMO1/sentrin specific peptidase 1 transcript_id : NM_144851.3

name	Pfkm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367127 GeneID:18642 MGI:97548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphofructokinase, muscle transcript_id : NM_021514.3

name	Asb8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801748 GeneID:78541 MGI:1925791
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 8 transcript_id : NM_030121.3

name	LOC100043335 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266805 GeneID:100043335
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480631.1

name	Arid2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110624796 GeneID:77044 MGI:1924294
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence ISS]; GO:0016563 - transcriptional activator activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : zipzap product : AT rich interactive domain 2 (Arid-rfx like) protein_id : NP_780460.2

name	Sfrs2ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647277 GeneID:72193 MGI:1919443
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : splicing factor, arginine/serine-rich 2, interacting protein protein_id : NP_082424.2

name	Slc38a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543733 CCDS:CCDS27777.1 GeneID:105727 MGI:2145895
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0015186 - L-glutamine transporter activity [Evidence IDA] GO_process : GO:0006868 - glutamine transport [Evidence IDA] codon_start : 1 product : solute carrier family 38, member 1 protein_id : NP_598847.2

name	Slc38a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543735 CCDS:CCDS27778.1 GeneID:67760 MGI:1915010
definition	codon_start : 1 product : solute carrier family 38, member 2 protein_id : NP_780330.2

name	Slc38a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543737 CCDS:CCDS27779.1 GeneID:69354 MGI:1916604
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : system A amino acid transporter 3 product : solute carrier family 38, member 4 protein_id : NP_081328.2

name	Amigo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017449 CCDS:CCDS27780.1 GeneID:105827 MGI:2145995
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] [Evidence ISS]; GO:0007157 - heterophilic cell adhesion [Evidence ISS]; GO:0007156 - homophilic cell adhesion [Evidence ISS]; GO:0043069 - negative regulation of programmed cell death [Evidence ISS] codon_start : 1 note : alivin 1; amphoterin induced gene and ORF 2 product : amphoterin induced gene 2 protein_id : NP_835215.1

name	BC038822 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26986609 CCDS:CCDS27781.1 GeneID:239647 MGI:2446270
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC239647 protein_id : NP_758497.1

name	D15Ertd682e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386276 CCDS:CCDS27782.1 GeneID:71919 MGI:1277218
definition	GO_function : GO:0008483 - transaminase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC71919 protein_id : NP_082279.1

name	Pp11r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679429 CCDS:CCDS27783.1 GeneID:19011 MGI:97746
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0008083 - growth factor activity [Evidence ISS]; GO:0008236 - serine-type peptidase activity [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007565 - pregnancy [Evidence ISS]; GO:0006508 - proteolysis [Evidence ISS] codon_start : 1 product : placental protein 11 related protein_id : NP_032928.1

name	Rapgef3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450061 GeneID:223864 MGI:2441741
definition	GO_component : GO:0005952 - cAMP-dependent protein kinase complex [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0030552 - cAMP binding [Evidence IEA]; GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 note : exchange protein directly activated by cAMP product : Rap1 guanine-nucleotide-exchange factor directly activated by cAMP protein_id : NP_659099.1

name	4930570C03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385856 GeneID:67739 MGI:1914989
definition	codon_start : 1 product : hypothetical protein LOC67739 protein_id : NP_080629.1

name	Hdac7a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254548 GeneID:56233 MGI:1891835
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] [Evidence IDA]; GO:0000118 - histone deacetylase complex [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA] GO_function : GO:0004407 - histone deacetylase activity [Evidence TAS] [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016566 - specific transcriptional repressor activity [Evidence TAS]; GO:0003714 - transcription corepressor activity [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence TAS]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence TAS]; GO:0016568 - chromatin modification [Evidence TAS] [Evidence IEA]; GO:0006954 - inflammatory response [Evidence TAS]; GO:0045843 - negative regulation of striated muscle development [Evidence TAS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IDA]; GO:0007399 - nervous system development [Evidence TAS]; GO:0000074 - regulation of progression through cell cycle [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : mFLJ00062 protein; histone deacetylase 7A, promoter 1; histone deacetylase 7A, promoter 2; histone deacetylase 7A, promoter 3 product : histone deacetylase 7A protein_id : NP_062518.2

name	Vdr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543944 CCDS:CCDS27784.1 GeneID:22337 MGI:103076
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IDA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP]; GO:0006816 - calcium ion transport [Evidence IMP]; GO:0007275 - development [Evidence IMP]; GO:0050892 - intestinal absorption [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : vitamin D receptor protein_id : NP_033530.2

name	Tmem106c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41235747 CCDS:CCDS27785.1 GeneID:380967 MGI:1196384
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC380967 protein_id : NP_958747.1

name	Col2a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624305 GeneID:12824 MGI:88452
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0001502 - cartilage condensation [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0006029 - proteoglycan metabolism [Evidence IMP] codon_start : 1 exception : mismatches in translation note : disproportionate micromelia product : procollagen, type II, alpha 1 protein_id : NP_112440.1

name	Senp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450063 GeneID:223870 MGI:2445054
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0016926 - protein desumoylation [Evidence IMP] [Evidence IDA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : SUMO1/sentrin specific protease 1 protein_id : NP_659100.1

name	Pfkm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981185 CCDS:CCDS27786.1 GeneID:18642 MGI:97548
definition	GO_component : GO:0005945 - 6-phosphofructokinase complex [Evidence IEA] [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0003872 - 6-phosphofructokinase activity [Evidence ISS] [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008443 - phosphofructokinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006096 - glycolysis [Evidence IEA]; GO:0006110 - regulation of glycolysis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : phosphofructokinase-1 A isozyme; phosphofructokinase-M (connecting peptide) product : phosphofructokinase, muscle protein_id : NP_067489.2

name	Asb8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560038 CCDS:CCDS27787.1 GeneID:78541 MGI:1925791
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] codon_start : 1 exception : mismatches in translation product : ankyrin repeat and SOCS box-containing protein 8 protein_id : NP_084397.2

name	LOC667894 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667894
definition	number : 2 pseudo : _no_value

name	LOC667894 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667894
definition	number : 1 pseudo : _no_value

name	LOC667941 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667941
definition	number : 1 pseudo : _no_value

name	LOC546651 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546651
definition	number : 1 pseudo : _no_value

name	LOC100042774 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042774
definition	number : 3 pseudo : _no_value

name	LOC100042774 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042774
definition	number : 2 pseudo : _no_value

name	LOC100042774 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042774
definition	number : 1 pseudo : _no_value

name	D030018L15Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149266562 GeneID:402773 MGI:3028082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D030018L15 gene pseudo : _no_value transcript_id : XR_035101.1

name	EG667869 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149266803 GeneID:667869 MGI:3647330
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 ESTs, 2 Proteins product : predicted gene, EG667869 pseudo : _no_value transcript_id : XR_002091.2

name	LOC667874 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266749 GeneID:667874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 4 Proteins product : similar to Eif3s2 protein pseudo : _no_value transcript_id : XR_033830.1

name	LOC100043354 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266806 GeneID:100043354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : similar to high mobility group box 1 pseudo : _no_value transcript_id : XR_034778.1

clone name	MSMg01-376L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543E08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-299A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363E18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-403O03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-527A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C10
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-265H04.b	B6Ng01-265H04.g
ACC	GA069096	GA069097
length	500	1,134
definition	B6Ng01-265H04.b	B6Ng01-265H04.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(96,835,905 - 96,836,410)	(96,983,222 - 96,984,376)
sequence	aattcccagcaatcacacgataactcacaaccatctgtacagctaccgtg tactcatatacataaaaacaaaacaaaacaaaacacccaaccaaacacaa aataaataaaaaaaataaatttgaattcatgtatttttctcatactttaa aagcagtaacactgctatctatctatctatctatctatctatctatctat ctatctggtcaaccttaagttgtcctacattctatgagaaaataataatg ggcccggacccagaactgcaagcacatagaaacctaagttcacaccgagt cagaacattgccccaattcttcagaactccatgtacttaccgggaacagc acgatgggcacggtcagtgtcactgccaccaggactgccaggcgcaccat gagaagagccgtatcaaatgtgtagaccttgctgtaagcatgcagcagct cgtcttcaacgtcccctgaaagatgaagagttcgggggtgggggtggggg	gaattccaaaacggtctcaggtagcaagcagactgtcttactggagattg gatggaaggccactggggtgatgtaatgaaggtcttatattcatgccagg gctctgtggaaagcaagcctcaatggtggcaatctgggatgtcttgtgag gtgcacacccaagcagcagcagcactggagaggctctatggttattcctc acggttggtgctaagatcctagagcaaagagattaattacctgaaggtga aatgtactgccacggaggagccaagatttagaaaggaaaagattcttagc ttgactacataaagaccaaaaaccccccaaagagtggcgccaccccacag gtcactaagattagtactggcagggcaacgggcagctgtcatctagagac cgtgggtgcacctgggcgcccagccttcccagtgtgcatgcacgcaccat attagtctgcagactgtagcttctaccactcaagcccctgggcatgataa cctccacccagatcccagaggatacatcttgaccgtgtgtgtcagtcacg tggacatcccagctcacataccctgagccccgcaggctttgcttcagcag gggactccacctagctctgccttgcagtcgtttttcttcctaggcttgct aggctccctctgcacttgggtttctgagccccgagtactgtcagccaaag ggaatggagttcctgatagaagtgggtggaggaaagtgaagatccagttg cagagccatttctcccgtttggcatcccgccctcccttccctttcctgca tggctggagttgaacttgaggtcttacccatggtgggaaagtgctccacc atttgtgccccagcccaaccctctcctgttgttttagagcctcttctaag ctgccaagacccatctttctctcacaagagaaatacacgaaaacaacagc aaacagaacacacaacaccccccaaaccccaaaaccaaacaaagcaagat gagaaaaaaaaactgtttgagatttgcgcactcgtgctttctgaaattta cattaaaattttatgacatgtttgtcggttgattggtcattctggcaaga ccttccagcagtggtgtagctatcagcttcactg
quality values	Open. Hide. 30 59 62 62 62 62 39 36 62 59 62 62 62 59 59 62 51 62 62 59 62 62 62 62 62 27 24 30 21 25 27 22 22 28 25 32 43 40 50 59 49 62 62 59 62 62 62 62 59 59 59 62 59 62 54 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 50 50 51 46 32 34 32 54 54 49 49 49 54 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 49 49 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 42 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 43 37 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 58 58 47 54 39 46 46 46 46 58 58 58 58 58 58 49 58 58 58 58 58 58 58 58 58 48 58 58 49 31 12	Open. Hide. 62 47 51 47 62 62 44 32 62 62 62 30 30 28 25 27 28 28 21 25 49 31 32 45 51 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 59 62 62 62 59 59 59 59 62 62 62 59 59 62 62 51 51 43 42 28 31 35 54 42 42 49 49 54 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 59 62 62 59 62 62 62 62 59 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 38 54 54 58 58 58 58 49 58 58 54 58 58 45 58 54 58 58 58 58 58 58 58 54 44 58 38 49 54 58 58 58 58 58 58 58 54 54 58 58 58 58 58 58 58 58 58 54 58 58 58 58 54 54 58 58 58 58 51 50 51 58 53 58 54 54 51 58 58 53 53 50 58 58 58 58 58 58 58 58 45 41 58 58 58 58 58 58 51 37 58 49 58 58 58 51 49 58 58 52 52 50 58 47 28 49 58 58 39 32 58 51 49 46 46 58 58 51 50 58 58 53 58 53 48 43 58 50 58 52 53 49 50 53 53 58 58 58 58 54 53 49 44 52 58 51 49 39 58 52 54 50 50 40 58 52 51 58 52 54 37 41 44 49 53 52 51 51 52 53 54 49 51 54 54 54 49 44 41 51 51 54 33 54 54 38 44 42 51 32 41 42 39 51 54 49 42 38 39 51 33 26 54 52 45 54 35 35 35 37 46 39 51 37 33 35 37 49 41 42 37 40 45 29 36 41 32 40 54 14 22 37 51 54 33 24 52 53 54 53 37 34 45 47 38 28 36 31 24 32 21 34 53 32 31 34 32 32 53 29 47 47 29 42 53 51 47 33 32 51 41 35 30 49 31 33 42 32 32 31 28 51 51 31 30 46 32 21 15 51 45 32 27 25 51 32 32 51 31 26 42 31 42 31 30 29 21 46 29 19 11 46 29 26 35 35 31 32 33 27 41 38 37 36 25 41 14 32 27 28 31 29 40 29 23 31 28 46 21 41 46 30 43 48 31 23 23 31 30 30 29 41 21 22 17 25 31 47 30 31 32 31 26 44 46 24 24 18 41 44 32 21 25 29 32 26 33 31 30 18 17 25 29 14 24 38 17 41 43 29 33 21 32 18 29 29 25 13 4 15 14 16 19 5 5 8 17 32 27 35 13 22 21 31 19 21 14 14 17 10 14 47 31 23 34 27 31 19 14 17 28 18 16 19 12 26 43 16 20 23 32 19 32 31 30 37 33 26 26 13 17 12 19 30 20 23 43 8 18 21 23 25 11 12 7 9 4 5 5 10 13 5 3 21 21 25 21 15 7 21 19 13 21 16 19 9 27 21 12 4 10 6 16 12 6 8 28 15 22 19 13 13 24 28 8 16 3 9 24 47 47 47 47 47 47 47 21 11 7 13 9 34 23 16 7 4 8 6 28 13 12 18 5 3 3 4 11 15 7 5 9 13 18 30 7 11 10 8 16 28 9 7 22 16 5 9 9 10 6 22 30 28 16 11 19 17 14 9 3 11 16 16 7 5 9 17 29 21 5 9 13 5 3 3 4 3 2 5 17 4 7 3 2 3 17 5 1 3 4 6 23 21 25 8 22 5 2 5 5 2 4 5 2 1 3 4 1 3 10 4 7 8 16 13 12 18 5 4 5 13 27 4 6 4 11 2 2 4 7

Alignment Information

BAC End 1

BAC End 2

seq1: chr15_96835905_96836410
seq2: B6Ng01-265H04.b_46_551

seq1  GAATTCAATTCCCAGCAATCACACGATAACTCACAACCATCTGTACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAATCACACGATAACTCACAACCATCTGTACAGCT  50

seq1  ACCGTGTACTCATATACATAAAAACAAAACAAAACAAAACACCCAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTACTCATATACATAAAAACAAAACAAAACAAAACACCCAACCAA  100

seq1  ACACAAAATAAATAAAAAAAATAAATTTGAATTCATGTATTTTTCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATAAATAAAAAAAATAAATTTGAATTCATGTATTTTTCTCATA  150

seq1  CTTTAAAAGCAGTAACACTGCTATCTATCTATCTATCTATCTATCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGCAGTAACACTGCTATCTATCTATCTATCTATCTATCTATCT  200

seq1  ATCTATCTATCTGGTCAACCTTAAGTTGTCCTACATTCTATGAGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTGGTCAACCTTAAGTTGTCCTACATTCTATGAGAAAATA  250

seq1  ATAATGGGCCCGGACCCAGAACTGCAAGCACATAGAAACCTAAGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGCCCGGACCCAGAACTGCAAGCACATAGAAACCTAAGTTCACA  300

seq1  CCGAGTCAGAACATTGCCCCAATTCTTCAGAACTCCATGTACTTACCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCAGAACATTGCCCCAATTCTTCAGAACTCCATGTACTTACCGGG  350

seq1  AACAGCACGATGGGCACGGTCAGTGTCACTGCCACCAGGACTGCCAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACGATGGGCACGGTCAGTGTCACTGCCACCAGGACTGCCAGGCG  400

seq1  CACCATGAGAAGAGCCGTATCAAATGTGTAGACCTTGCTGTAAGCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAGAAGAGCCGTATCAAATGTGTAGACCTTGCTGTAAGCATGCA  450

seq1  GCAGCTCGTCTTCAACGTCCCCTGAAAGATGAAGAGTTCGGGGGTGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCGTCTTCAACGTCCCCTGAAAGATGAAGAGTTCGGGGGTGGGGG  500

seq1  TGGGGG  506
      ||||||
seq2  TGGGGG  506

seq1: chr15_96983222_96984376
seq2: B6Ng01-265H04.g_67_1200 (reverse)

seq1  CAGTGGAAGCCTGATAAGCTACACCACCCTTCCTGGAAAAGGTCTTTGCA  50
      |||| |||| ||||| |||||||||||   | ||||  |||||| |||| 
seq2  CAGT-GAAG-CTGAT-AGCTACACCAC---TGCTGG--AAGGTC-TTGCC  41

seq1  AAAATAAACAAAACAAACGGAACAAAACATGTCATTAAAAATTTTATGTA  100
      | |||  || || ||| ||  || |||||||||| ||||| ||| |||||
seq2  AGAAT-GACCAATCAACCG--AC-AAACATGTCA-TAAAATTTTAATGTA  86

seq1  AATTTCAGAAAGCACGAGTTGGCGCAAATCTCAAACAGTTTTTTTTCTCC  150
      |||||||||||||||||||  |||||||||||||||||||||||||   |
seq2  AATTTCAGAAAGCACGAGT--GCGCAAATCTCAAACAGTTTTTTTTTCTC  134

seq1  ATCTTGCTTTGTTTGGTTTTGGGGTTTGGGGGGTTGTTGTTGTTGTTCTG  200
      ||||||||||||||||||||||||||||||||| ||||||   |||||||
seq2  ATCTTGCTTTGTTTGGTTTTGGGGTTTGGGGGG-TGTTGT--GTGTTCTG  181

seq1  TTTGCTGTTGTTTTCGTGTATTTCTCTTTGTGAGAGAAAGATGGGTCTTG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGCTGTTGTTTTCGTGTATTTCTC-TTGTGAGAGAAAGATGGGTCTTG  230

seq1  GCAGCCTTAGAAGAGGCTCTAAAACAACAGGAGAGGGTTGGGCTGGGGCA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAG-CTTAGAAGAGGCTCTAAAACAACAGGAGAGGGTTGGGCTGGGGCA  279

seq1  CAAATGGTGGAGCACTTTCCCACCATGGGTAAGACCTCAAGTTCAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTGGAGCACTTTCCCACCATGGGTAAGACCTCAAGTTCAACTCC  329

seq1  AGCCATGCAGGAAAGGGAAGGGAGGGCGGGATGCCAAACGGGAGAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCAGGAAAGGGAAGGGAGGGCGGGATGCCAAACGGGAGAAATGG  379

seq1  CTCTGCAACTGGATCTTCACTTTCCTCCACCCACTTCTATCAGGAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAACTGGATCTTCACTTTCCTCCACCCACTTCTATCAGGAACTCC  429

seq1  ATTCCCTTTGGCTGACAGTACTCGGGGCTCAGAAACCCAAGTGCAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTTGGCTGACAGTACTCGGGGCTCAGAAACCCAAGTGCAGAGGG  479

seq1  AGCCTAGCAAGCCTAGGAAGAAAAACGACTGCAAGGCAGAGCTAGGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCAAGCCTAGGAAGAAAAACGACTGCAAGGCAGAGCTAGGTGGA  529

seq1  GTCCCCTGCTGAAGCAAAGCCTGCGGGGCTCAGGGTATGTGAGCTGGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGCTGAAGCAAAGCCTGCGGGGCTCAGGGTATGTGAGCTGGGAT  579

seq1  GTCCACGTGACTGACACACACGGTCAAGATGTATCCTCTGGGATCTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGTGACTGACACACACGGTCAAGATGTATCCTCTGGGATCTGGGT  629

seq1  GGAGGTTATCATGCCCAGGGGCTTGAGTGGTAGAAGCTACAGTCTGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTATCATGCCCAGGGGCTTGAGTGGTAGAAGCTACAGTCTGCAGA  679

seq1  CTAATATGGTGCGTGCATGCACACTGGGAAGGCTGGGCGCCCAGGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATGGTGCGTGCATGCACACTGGGAAGGCTGGGCGCCCAGGTGCAC  729

seq1  CCACGGTCTCTAGATGACAGCTGCCCGTTGCCCTGCCAGTACTAATCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTCTCTAGATGACAGCTGCCCGTTGCCCTGCCAGTACTAATCTTA  779

seq1  GTGACCTGTGGGGTGGCGCCACTCTTTGGGGGGTTTTTGGTCTTTATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGTGGGGTGGCGCCACTCTTTGGGGGGTTTTTGGTCTTTATGTA  829

seq1  GTCAAGCTAAGAATCTTTTCCTTTCTAAATCTTGGCTCCTCCGTGGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTAAGAATCTTTTCCTTTCTAAATCTTGGCTCCTCCGTGGCAGT  879

seq1  ACATTTCACCTTCAGGTAATTAATCTCTTTGCTCTAGGATCTTAGCACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCACCTTCAGGTAATTAATCTCTTTGCTCTAGGATCTTAGCACCA  929

seq1  ACCGTGAGGAATAACCATAGAGCCTCTCCAGTGCTGCTGCTGCTTGGGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAGGAATAACCATAGAGCCTCTCCAGTGCTGCTGCTGCTTGGGTG  979

seq1  TGCACCTCACAAGACATCCCAGATTGCCACCATTGAGGCTTGCTTTCCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCACAAGACATCCCAGATTGCCACCATTGAGGCTTGCTTTCCAC  1029

seq1  AGAGCCCTGGCATGAATATAAGACCTTCATTACATCACCCCAGTGGCCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTGGCATGAATATAAGACCTTCATTACATCACCCCAGTGGCCTT  1079

seq1  CCATCCAATCTCCAGTAAGACAGTCTGCTTGCTACCTGAGACCGTTTTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAATCTCCAGTAAGACAGTCTGCTTGCTACCTGAGACCGTTTTGG  1129

seq1  AATTC  1155
      |||||
seq2  AATTC  1134

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information