BAC Information

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BAC

Clone NameB6Ng01-268B18
Chromosome15 (Build37)9 (Build37)
Map Location 81,200,021 - 81,201,21931,906,046 - 31,906,468
singlet/doubletsingletsinglet
Overlap geneSt13
Upstream geneCacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17
Downstream geneXpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268B18.bB6Ng01-268B18.g
ACCGA071058GA071059
length1,175715
definitionB6Ng01-268B18.b B6Ng01-268B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,200,021 - 81,201,219)(31,906,046 - 31,906,468)
sequence
gaattcacttcccatcaaaatcgatttccaattttaacaggacattactt
ttactaatgatttctagcagtcttattactctgggaagttaaagcacaaa
tgcaacttacagtgttcgtatgcttttacttatacaagctataaatcctc
atttgttttgaaacttcaaaatgaaagggtaagacactgggtttgcaagg
tgtggtggcacaaagctctgatcccagctctggggagggtggcagataca
tctctgagttcgaggccagcctgctttacatagtgagttctagaacagcc
agggctacacagaacaaccctgtctcaaaaaaaaaaaaaaaattgtttta
aaagaaaaaaaaaaaatgaaagggcatacttaaattacttcttaggttca
tctcctctacattctcccagcaaaatgtaaaacagcacagaaggaggctt
cctgcgctggttttaagaataaaggccgactagaactttctctcatactg
ttagaaacactcttggaggtggactgtgtcccagtacacagcactgacat
agtgtgtgtgaggccccagttcaatccccaggacacatatgcatattttt
taaacggtaataagacacacacacacacacacacacacacatatatatat
aaataaaatgatgcttattaaatgacctccaaattatgacttactattta
attatgtagctgtatgtcctttctttcaacaaaggttggaaacaaatagg
ttacaatgtgtaggtttcctccagaattgaaacaatccaacctgcactaa
aactctttcaagaaagcaaacaactcaaaatagctttaggaagtccctga
aactgaccaaattagcttggtcccctccctaagagctaagctgcaaacaa
tgagaccagtagagctgcctagaaaaggcagaaacagctaaactgcctgg
aaaggtcactgggaaaggtcactctactgctagctgcctgtagcagtgag
agagctcagctcccagctttgtgagctgtacatatccatgctgggtgggc
tttggtgatgcagctgctgcgtcatctgctctataattattccctcaccc
tatcctgtaccatcctggataaactcatgcctcacagatggactttgatg
actgtcatctgaggagagtatgtgt
gaattccaaacatcacacaaccacagaaactatctgtaggtggcaaaacc
atgcctctgctagacaggaggcaaattacagtcatctgttgcagacagcc
taaagcagtcctacctccctacatctgggaatcaaacaaaggcacattct
tataatatttctgtttttttttttttttttaaaaccaaaattccaaatgt
ctcaaaaatgtcactaaagatctctgttgaggctagcctggtggtctaca
aagctagttccaagatagtcagggctacataaagaaattctgttttgaaa
aaacaaacaacaggggctggagagatggctcagtggttaagagcaccgac
tgctcttctgaaggtcctgagttcaaatcccagcaaccacatggtggctc
acaaccatctgtaatgaggtctgacaccctcttctggtgcatctgaagac
agctacagtgtacttatatataataataaataaatctttaaaaattattt
taaaaaacgaaacaaacaacaaacaaacaaacaagaaacaaaaaaagaaa
aagaaaacttattagagctgaataggatcgctcatgcctgtaactccagc
actaggaggctgagacaggatgttagcctgagttggaggccatcctgggc
taggattctaccttgactcttaaaacttgactaccaaacaaacaaacata
caaacaaacaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_81200021_81201219
seq2: B6Ng01-268B18.b_47_1221

seq1  GAATTCACTTCCCATCAAAATCGATTTCCAATTTTAACAGGACATTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCCATCAAAATCGATTTCCAATTTTAACAGGACATTACTT  50

seq1  TTACTAATGATTTCTAGCAGTCTTATTACTCTGGGAAGTTAAAGCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATGATTTCTAGCAGTCTTATTACTCTGGGAAGTTAAAGCACAAA  100

seq1  TGCAACTTACAGTGTTCGTATGCTTTTACTTATACAAGCTATAAATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTACAGTGTTCGTATGCTTTTACTTATACAAGCTATAAATCCTC  150

seq1  ATTTGTTTTGAAACTTCAAAATGAAAGGGTAAGACACTGGGTTTGCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTGAAACTTCAAAATGAAAGGGTAAGACACTGGGTTTGCAAGG  200

seq1  TGTGGTGGCACAAAGCTCTGATCCCAGCTCTGGGGAGGGTGGCAGATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCACAAAGCTCTGATCCCAGCTCTGGGGAGGGTGGCAGATACA  250

seq1  TCTCTGAGTTCGAGGCCAGCCTGCTTTACATAGTGAGTTCTAGAACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTCGAGGCCAGCCTGCTTTACATAGTGAGTTCTAGAACAGCC  300

seq1  AGGGCTACACAGAACAACCCTGTCTCAAAAAAAAAAAAAAAATTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAACAACCCTGTCTCAAAAAAAAAAAAAAAATTGTTTTA  350

seq1  AAAGAAAAAAAAAAAATGAAAGGGCATACTTAAATTACTTCTTAGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAAAAATGAAAGGGCATACTTAAATTACTTCTTAGGTTCA  400

seq1  TCTCCTCTACATTCTCCCAGCAAAATGTAAAACAGCACAGAAGGAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTACATTCTCCCAGCAAAATGTAAAACAGCACAGAAGGAGGCTT  450

seq1  CCTGCGCTGGTTTTAAGAATAAAGGCCGACTAGAACTTTCTCTCATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGCTGGTTTTAAGAATAAAGGCCGACTAGAACTTTCTCTCATACTG  500

seq1  TTAGAAACACTCTTGGAGGTGGACTGTGTCCCAGTACACAGCACTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACTCTTGGAGGTGGACTGTGTCCCAGTACACAGCACTGACAT  550

seq1  AGTGTGTGTGAGGCCCCAGTTCAATCCCCAGGACACATATGCATATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGAGGCCCCAGTTCAATCCCCAGGACACATATGCATATTTTT  600

seq1  TAAACGGTAATAAGACACACACACACACACACACACACACATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGGTAATAAGACACACACACACACACACACACACACATATATATAT  650

seq1  AAATAAAATGATGCTTATTAAATGACCTCCAAATTATGACTTACTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGATGCTTATTAAATGACCTCCAAATTATGACTTACTATTTA  700

seq1  ATTATGTAGCTGTATGTCCTTTCTTTCAACAAAGGTTGGAAACAAATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAGCTGTATGTCCTTTCTTTCAACAAAGGTTGGAAACAAATAGG  750

seq1  TTACAATGTGTAGGTTTCCTCCAGAATTGAAACAATCCAACCTGCACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGTGTAGGTTTCCTCCAGAATTGAAACAATCCAACCTGCACTAA  800

seq1  AACTCTTTCAAGAAAGCAAACAACTCAAAATAGCTTTAGGAAGTCCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCAAGAAAGCAAACAACTCAAAATAGCTTTAGGAAGTCCCTGA  850

seq1  AACTGACCAAATTAGCTTGGTCCCCTCCCTAAGAGCTAAGCTGCAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCAAATTAGCTTGGTCCCCTCCCTAAGAGCTAAGCTGCAAACAA  900

seq1  TGAGACCAGTAGAGCTGCCTAGAAAAGGCAGGAAACAGCTAAACTGCCTG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGACCAGTAGAGCTGCCTAGAAAAGGCA-GAAACAGCTAAACTGCCTG  949

seq1  GAAAAGGTCACT-GGAAAGGTCACTCTAACTGCTAAGCTGCCTGTAGGCA  999
      | |||||||||| |||||||||||||| |||||| ||||||||||| |||
seq2  G-AAAGGTCACTGGGAAAGGTCACTCT-ACTGCT-AGCTGCCTGTA-GCA  995

seq1  GTGGAGAGAGCTCCAGGCTCCCAGCTTTGTGAGCTGTACATAATCCATGC  1049
      || ||||||||||   ||||||||||||||||||||||||| ||||||||
seq2  GT-GAGAGAGCTC--AGCTCCCAGCTTTGTGAGCTGTACAT-ATCCATGC  1041

seq1  TGGGTGGGCTTTGGTGATGCAGCTGCCTGCGTCATTCCTGCTCCTATAAA  1099
      ||||||||||||||||||||||||| |||||||||  ||||| |||||| 
seq2  TGGGTGGGCTTTGGTGATGCAGCTG-CTGCGTCAT--CTGCT-CTATAAT  1087

seq1  TAATCCCTCACCCCTATTCCTGTAAACAACCCTGATAAAACTCATGGCTC  1149
      || ||||||| ||||| ||||||  || | ||||   ||||||||| |||
seq2  TATTCCCTCA-CCCTA-TCCTGT--ACCATCCTGGATAAACTCATGCCTC  1133

seq1  ACCAAGATGGATTTTGTATTGTACTGTCAATCTGGGGAGAGTAAATGTGT  1199
      ||  ||||||| |||| ||   |||||| ||||| |||||||  ||||||
seq2  AC--AGATGGACTTTG-AT--GACTGTC-ATCTGAGGAGAGT--ATGTGT  1175

seq1: chr9_31906046_31906468
seq2: B6Ng01-268B18.g_380_782 (reverse)

seq1  GTTTTTGTTTGTTTGTTTGTTT-TTAATTT--------ATTTTTACAAAT  41
      |||||||||||||||| ||||| ||  |||        | |||||  | |
seq2  GTTTTTGTTTGTTTGTATGTTTGTTTGTTTGGTAGTCAAGTTTTAAGAGT  50

seq1  -GAGTTTGGGTCTTTTTCCTGCATGAATGTTTGTTCACTGCTAGCATGCG  90
        || | |  || |   || | |||         |||  |||| ||| | 
seq2  CAAGGTAGAATCCTAGCCCAGGATGGCCTCCAACTCA-GGCTAACATCC-  98

seq1  GTGCCTGCAGAGGCCAGGAAAGAGCATTGGATGCTTTGGAACCCAGTTAA  140
       || || |||   ||  |             |||  |||     ||||| 
seq2  -TGTCT-CAGCCTCCTAG-------------TGC--TGG-----AGTTAC  126

seq1  GGGTGGTGATGAGC--TCCCATGTGGGTGCTGGAAGTGAACTCTGGTCCT  188
       ||     ||||||  ||| ||   | |     ||||    |||  | ||
seq2  AGG----CATGAGCGATCCTATTCAGCTCTAATAAGT--TTTCTTTTTCT  170

seq1  CTGCAAGAGCAGCCCAGTCCTCGTAACTGCTTCTTTTTTTTTTTTTT--T  236
       |    |          | || ||   || || ||| || ||| |||  |
seq2  TTTTTTG---------TTTCTTGT--TTGTTTGTTTGTTGTTTGTTTCGT  209

seq1  TTTCT-------TTTTT--AGATTTATTTATTTATCATATGTAAGTACAC  277
      ||| |       |||||  ||||||||||| |||| |||| |||||||||
seq2  TTTTTAAAATAATTTTTAAAGATTTATTTA-TTATTATATATAAGTACAC  258

seq1  TGTAACTGTCTTTAGACACACCCGAAGAGGGCTGTCAGATCTCATTACGG  327
      |||| ||||||| |||  |||| |||||||| ||||||| |||||||| |
seq2  TGTAGCTGTCTTCAGATGCACCAGAAGAGGG-TGTCAGACCTCATTACAG  307

seq1  ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCA  357

seq1  GAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCACCAGCCCC  423
      ||||||||||| ||||||||| || |||||||||||| ||||||||
seq2  GAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCC  403