BAC Information

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BAC

Clone NameB6Ng01-268O15
Chromosome15 (Build37)9 (Build37)
Map Location 100,453,758 - 100,454,75344,203,045 - 44,203,111
singlet/doubletsingletsinglet
Overlap geneBC004728
Upstream geneRacgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2
Downstream geneBin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268O15.bB6Ng01-268O15.g
ACCGA071650GA071651
length1,003111
definitionB6Ng01-268O15.b B6Ng01-268O15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,453,758 - 100,454,753)(44,203,045 - 44,203,111)
sequence
gaattccaggctagccagggttattgaatgagaccatgagggggttgggt
tttgctaggtgtggtgacatgtctataatcccagaactcagggctgagaa
agattgttcaagatcctcctgtactatatagagctccaggctacaaatac
aatccctgtcctttgccagctgtgcgcccttggataagaaagaatcacct
aacccatctgcatcgctcgctgcagatgctaacggggtgacaatacctag
ttgtacgattgtaactatgacactacgacaggagggttatagtaatgtaa
ggggcacgttgagtgcagagagagagagaaggggggatgtaaacgtctgt
gtctctgtgtgtctgtgtatgtatgtggtatgtgtctgtgtgtgtgatgc
agcatcatggtgtatccagtacattttgcagcgttctacatactctaaca
tactcctgcccgtggggtgtacttgtggaagtcacaggggacgagttctg
ggctccatcctcaccatcctctcggtttgacacaggatctcttcctgtcc
tctgctccctacactggctggcctgtgaggagtctcctgtctccacgtcc
cacctcactatggcagtgctgagctggcaaaggcatgctgctgccaggtg
cccttcacctttaaccccggtgtttaggagatggacaggtggatcgatgc
gatttccaggccagccagtaccagtgggaatgtttctaaagcaaaacaaa
tgcatgataccacctatggctttactcaggttctcatgcttgtacagcaa
gggccttgcccaccgagcctttctccccggccttacatattataaacgtg
atttctaaagtaataaaatactattcttttttttttttttttaagatttt
ttaatttattttatgaatattgggtacagtgctgctgtcctcagacacac
cagaagaggggcattcagatctcattacaggatgggtgtgaaggccacta
tat
aggaagctgaggcaggaggatcactagctctagggaagttatgggggggg
gtgagaaagagacagagagagagagagagagagagagagagagagaagga
ggaggaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100453758_100454753
seq2: B6Ng01-268O15.b_48_1050

seq1  GAATTCCAGGCTAGCCAGGGTTATTGAATGAGACCATGAGGGGGTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCAGGGTTATTGAATGAGACCATGAGGGGGTTGGGT  50

seq1  TTTGCTAGGTGTGGTGACATGTCTATAATCCCAGAACTCAGGGCTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGTGTGGTGACATGTCTATAATCCCAGAACTCAGGGCTGAGAA  100

seq1  AGATTGTTCAAGATCCTCCTGTACTATATAGAGCTCCAGGCTACAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCAAGATCCTCCTGTACTATATAGAGCTCCAGGCTACAAATAC  150

seq1  AATCCCTGTCCTTTGCCAGCTGTGCGCCCTTGGATAAGAAAGAATCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGTCCTTTGCCAGCTGTGCGCCCTTGGATAAGAAAGAATCACCT  200

seq1  AACCCATCTGCATCGCTCGCTGCAGATGCTAACGGGGTGACAATACCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCTGCATCGCTCGCTGCAGATGCTAACGGGGTGACAATACCTAG  250

seq1  TTGTACGATTGTAACTATGACACTACGACAGGAGGGTTATAGTAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACGATTGTAACTATGACACTACGACAGGAGGGTTATAGTAATGTAA  300

seq1  GGGGCACGTTGAGTGCAGAGAGAGAGAGAAGGGGGGATGTAAACGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACGTTGAGTGCAGAGAGAGAGAGAAGGGGGGATGTAAACGTCTGT  350

seq1  GTCTCTGTGTGTCTGTGTATGTATGTGGTATGTGTCTGTGTGTGTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGTCTGTGTATGTATGTGGTATGTGTCTGTGTGTGTGATGC  400

seq1  AGCATCATGGTGTATCCAGTACATTTTGCAGCGTTCTACATACTCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATGGTGTATCCAGTACATTTTGCAGCGTTCTACATACTCTAACA  450

seq1  TACTCCTGCCCGTGGGGTGTACTTGTGGAAGTCACAGGGGACGAGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGCCCGTGGGGTGTACTTGTGGAAGTCACAGGGGACGAGTTCTG  500

seq1  GGCTCCATCCTCACCATCCTCTCGGTTTGACACAGGATCTCTTCCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATCCTCACCATCCTCTCGGTTTGACACAGGATCTCTTCCTGTCC  550

seq1  TCTGCTCCCTACACTGGCTGGCCTGTGAGGAGTCTCCTGTCTCCACGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCTACACTGGCTGGCCTGTGAGGAGTCTCCTGTCTCCACGTCC  600

seq1  CACCTCACTATGGCAGTGCTGAGCTGGCAAAGGCATGCTGCTGCCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACTATGGCAGTGCTGAGCTGGCAAAGGCATGCTGCTGCCAGGTG  650

seq1  CCCTTCACCTTTAACCCCGGTGTTTAGGAGATGGACAGGTGGATCGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACCTTTAACCCCGGTGTTTAGGAGATGGACAGGTGGATCGATGC  700

seq1  GATTTCCAGGCCAGCCAGTACCAGTGGGAATGTTTCTAAAGCAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGGCCAGCCAGTACCAGTGGGAATGTTTCTAAAGCAAAACAAA  750

seq1  TGCATGATACCACCTATGGCTTTACTCAGGTTCTCATGCTTGTACAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATACCACCTATGGCTTTACTCAGGTTCTCATGCTTGTACAGCAA  800

seq1  GGGCCTTGCCCACCGAGCC-TTCTCCCCGGCCTTACATATTATAAACGTG  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGCCTTGCCCACCGAGCCTTTCTCCCCGGCCTTACATATTATAAACGTG  850

seq1  ATTTCT-AAGTAATAAAATACTATTCTTTTTTTTTTTTTTTTTAAGATTT  898
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTCTAAAGTAATAAAATACTATTC-TTTTTTTTTTTTTTTTAAGATTT  899

seq1  TTTAATTTATTTTATGAATA-TGGGTACAGTGTTGCTGTCCTCAGACACA  947
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  TTTAATTTATTTTATGAATATTGGGTACAGTGCTGCTGTCCTCAGACACA  949

seq1  CCAGAAGA-GGGCA-TCAGATCTCATTACA-GATGGTTGTGA--GCCACC  992
      |||||||| ||||| ||||||||||||||| ||||| |||||  ||||| 
seq2  CCAGAAGAGGGGCATTCAGATCTCATTACAGGATGGGTGTGAAGGCCACT  999

seq1  ATAT  996
      ||||
seq2  ATAT  1003

seq1: chr9_44203045_44203111
seq2: B6Ng01-268O15.g_123_183 (reverse)

seq1  CCTCCTCCTCCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      | ||||||||      || |||||||||||||||||||||||||||||||
seq2  CATCCTCCTC------CTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  44

seq1  CTCTCTCTCTCTCTCAC  67
      |||| ||||| ||||||
seq2  CTCTGTCTCTTTCTCAC  61