BAC Information

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BAC

Clone NameB6Ng01-269E03
Chromosome15 (Build37)
Map Location 12,624,821 - 12,756,035
singlet/doubletdoublet
Overlap gene6030458C11Rik
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109
Downstream geneRnasen, Cdh6, LOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269E03.bB6Ng01-269E03.g
ACCGA071905GA071906
length1,0941,173
definitionB6Ng01-269E03.b B6Ng01-269E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,754,937 - 12,756,035)(12,624,821 - 12,625,730)
sequence
gaattcctaccgatccactaacctcttgtgaagaactgacttcccttggg
aacgcaagctcactcctagattgctactgcttagtgtagactcacttctt
ttacggagcttaccagaatctgccgtctgtgacagtcgtgtgtgcccatg
ttgaactcctccggcatgtccgtgaatcaagggttcattcagtcattcct
gcaggattcacagtctctgcacacagtaaaccgcaggcaagtttgactct
ccctcattgtgcatgcctctaagtcactacaattcccttccaccgctccc
cacaaatacgcgttttcaaaaccacctgggaggtatacattcaccgattc
catcacttactgagccagcacacgtgagacgctttcccaagctctgtagg
ctcaaagattataaggcacacaagcctgcagagttcaaggatcgcaaaac
ccatatacaaatgtttatataataacaacagtaatacgatgtcccgaaca
ctataaaaagaaaaacgcgatgtgataaatacaataaagtaaggatgtag
agagtcctggagaataaaaaggactctactgaagctagaggtggacaaca
gtcagggaattaacacctctccacagtgagaaaacggcacactccgttag
agaagctagacaaaggccctggcagtggtggcgcacgcctttaaacccag
aacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggt
ctacacggtgagttctaggacagccagggctacacagagaaaccctgttt
caacacacactcccctccaaaaataaaagctagatactgtaccactgtac
tatggatgcgaagttcaaatcaatgaatttaatgcaagtgggaaatacct
attcttgggatgccctttgaaagcaggaaaccgagggcgcgattctgaac
agtttactcgtccaggaccgacgacacacaagacttgcaagtgtgccttt
aagtcactgaaaaccccgcactttccccagttcactgcagccggcctcct
gctgatgaagagcaccgttggctggtttgcattctcccgccagc
gaattccacccctacacacacacacacacacacacacacacacacacaca
cacacacacaggctcatatgttcgaatacttggtctttggctgttggaat
tgtctgagaaggattaggaggtgtggcctgttggagggagtatgtctctt
gggatatgcttgatgtttcaaaagaaacctatccttgccaggatactctc
tgcctcttgcttgtgggatgtggtctctcagatgttcctaccactacgcc
attgtactggctagtcttgtgtcaacttgacacagctggagttatcacag
agaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaagg
cattttctcaattagtgatcaaggggaaaaggccccttgtgggtgggacc
atctctgggctggtagtcttggttctataagagagcaggctgagcaagcc
aggagaagcaagccagtaagtaacattcctccatggcctctgcatcagct
cctgtttcctgacctgtttgagttccagtcctgacttcctttggtgatga
acagcagtatggaagtgtaatctgaataaaccctttcctccccaacttgc
ttgttggtcattatgcttgtgcaggaatagaaaccctgactaagacagcc
atcatggactcttaatcctctgaaaccgtaagccccattaaacgcttgct
tttataagtttccttagacatggcgttttaccacagatatggaacagtaa
caatgacagacactaaacagatcattctggtcaggtctcagatacacaga
aaaataaaggaaaggggagaagccaggaacctggctgaactcatgttctg
ggatttctctaccatccttaggcatcccctccaggaaacctatatttgac
caacctgaccttgctataaccagacatttcttttctcattgggttcagcc
ttgtgatggcggatcttgattgtcaattctgactacatctagaattcaac
taaaactcaagctgcacttagcctctttaagggctcacttaaggcatgaa
ccaccaactccacagagtgaactatatttatactattatttatatataga
tgaataatctttacaattggcttatcatgtgactgatgaatttcatgaga
aatatatttatgaaatattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12754937_12756035
seq2: B6Ng01-269E03.b_46_1139 (reverse)

seq1  GCTGGCGGGAG-ATGCAAACCAGCCAAC-GTGCTCTTCATCCAGCAGGAG  48
      ||||||||||| |||||||||||||||| ||||||||||| |||||||||
seq2  GCTGGCGGGAGAATGCAAACCAGCCAACGGTGCTCTTCAT-CAGCAGGAG  49

seq1  GCCGGGCTGCAGGTTGAACCTGGGGAAAGTGCGGGGTTTTCAGTGACTTA  98
      ||| ||||||||  |||| |||||||||||||||||||||||||||||||
seq2  GCC-GGCTGCAG--TGAA-CTGGGGAAAGTGCGGGGTTTTCAGTGACTTA  95

seq1  AAGGCACACCTTGCAAGTCTTGTGTGTCGTCGGTCCTGGACGAGTAAACT  148
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACA-CTTGCAAGTCTTGTGTGTCGTCGGTCCTGGACGAGTAAACT  144

seq1  GTTCAGAATCGCGCCCTCGGTTTCCCTGCTTTCAAAGGGCATCCCAAGAA  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTCAGAATCGCGCCCTCGGTTT-CCTGCTTTCAAAGGGCATCCCAAGAA  193

seq1  TAGGTATTTCCCACTTGCATTAAATTCATTGATTTGAACTTCGCATCCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTCCCACTTGCATTAAATTCATTGATTTGAACTTCGCATCCAT  243

seq1  AGTACAGTGGTACAGTATCTAGCTTTTATTTTTGGAGGGGAGTGTGTGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTGGTACAGTATCTAGCTTTTATTTTTGGAGGGGAGTGTGTGTT  293

seq1  GAAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACCGTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACCGTGTA  343

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGT  393

seq1  TCTGGGTTTAAAGGCGTGCGCCACCACTGCCAGGGCCTTTGTCTAGCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTAAAGGCGTGCGCCACCACTGCCAGGGCCTTTGTCTAGCTTC  443

seq1  TCTAACGGAGTGTGCCGTTTTCTCACTGTGGAGAGGTGTTAATTCCCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGGAGTGTGCCGTTTTCTCACTGTGGAGAGGTGTTAATTCCCTGA  493

seq1  CTGTTGTCCACCTCTAGCTTCAGTAGAGTCCTTTTTATTCTCCAGGACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCCACCTCTAGCTTCAGTAGAGTCCTTTTTATTCTCCAGGACTC  543

seq1  TCTACATCCTTACTTTATTGTATTTATCACATCGCGTTTTTCTTTTTATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCCTTACTTTATTGTATTTATCACATCGCGTTTTTCTTTTTATA  593

seq1  GTGTTCGGGACATCGTATTACTGTTGTTATTATATAAACATTTGTATATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGGGACATCGTATTACTGTTGTTATTATATAAACATTTGTATATG  643

seq1  GGTTTTGCGATCCTTGAACTCTGCAGGCTTGTGTGCCTTATAATCTTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCGATCCTTGAACTCTGCAGGCTTGTGTGCCTTATAATCTTTGA  693

seq1  GCCTACAGAGCTTGGGAAAGCGTCTCACGTGTGCTGGCTCAGTAAGTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGAGCTTGGGAAAGCGTCTCACGTGTGCTGGCTCAGTAAGTGAT  743

seq1  GGAATCGGTGAATGTATACCTCCCAGGTGGTTTTGAAAACGCGTATTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCGGTGAATGTATACCTCCCAGGTGGTTTTGAAAACGCGTATTTGT  793

seq1  GGGGAGCGGTGGAAGGGAATTGTAGTGACTTAGAGGCATGCACAATGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCGGTGGAAGGGAATTGTAGTGACTTAGAGGCATGCACAATGAGG  843

seq1  GAGAGTCAAACTTGCCTGCGGTTTACTGTGTGCAGAGACTGTGAATCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCAAACTTGCCTGCGGTTTACTGTGTGCAGAGACTGTGAATCCTG  893

seq1  CAGGAATGACTGAATGAACCCTTGATTCACGGACATGCCGGAGGAGTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGACTGAATGAACCCTTGATTCACGGACATGCCGGAGGAGTTCA  943

seq1  ACATGGGCACACACGACTGTCACAGACGGCAGATTCTGGTAAGCTCCGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCACACACGACTGTCACAGACGGCAGATTCTGGTAAGCTCCGTA  993

seq1  AAAGAAGTGAGTCTACACTAAGCAGTAGCAATCTAGGAGTGAGCTTGCGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTGAGTCTACACTAAGCAGTAGCAATCTAGGAGTGAGCTTGCGT  1043

seq1  TCCCAAGGGAAGTCAGTTCTTCACAAGAGGTTAGTGGATCGGTAGGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGGAAGTCAGTTCTTCACAAGAGGTTAGTGGATCGGTAGGAATT  1093

seq1  C  1099
      |
seq2  C  1094

seq1: chr15_12624821_12625730
seq2: B6Ng01-269E03.g_329_1239

seq1  AGTCTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTT  50

seq1  CAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAAT  100

seq1  TAGTGATCAAGGGGAAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCAAGGGGAAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTG  150

seq1  GTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAG  200

seq1  CCAGTAAGTAACATTCCTCCATGGCCTCTGCATCAGCTCCTGTTTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGTAACATTCCTCCATGGCCTCTGCATCAGCTCCTGTTTCCTGA  250

seq1  CCTGTTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGG  300

seq1  AAGTGTAATCTGAATAAACCCTTTCCTCCCCAACTTGCTTGTTGGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAATCTGAATAAACCCTTTCCTCCCCAACTTGCTTGTTGGTCATT  350

seq1  ATGCTTGTGCAGGAATAGAAACCCTGACTAAGACAGCCATCATGGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTGCAGGAATAGAAACCCTGACTAAGACAGCCATCATGGACTCT  400

seq1  TAATCCTCTGAAACCGTAAGCCCCATTAAACGCTTGCTTTTATAAGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCTGAAACCGTAAGCCCCATTAAACGCTTGCTTTTATAAGTTTC  450

seq1  CTTAGACATGGCGTTTTACCACAGATATGGAACAGTAACAATGACAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACATGGCGTTTTACCACAGATATGGAACAGTAACAATGACAGACA  500

seq1  CTAAACAGATCATTCTGGTCAGGTCTCAGATACACAGAAAAATAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGATCATTCTGGTCAGGTCTCAGATACACAGAAAAATAAAGGAA  550

seq1  AGGGGAGAAGCCAGGAACCTGGCTGAACTCATGTTCTGGGATTTCTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGCCAGGAACCTGGCTGAACTCATGTTCTGGGATTTCTCTAC  600

seq1  CATCCTTAGGCATCCCCTCCAGGAAACCTATA-TTGACCAACCTGACCTT  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCCTTAGGCATCCCCTCCAGGAAACCTATATTTGACCAACCTGACCTT  650

seq1  GCTATAACCAGACATTTC-TTTCTCATT-GGTTCAGGCTTTGTGATGGCG  697
      |||||||||||||||||| ||||||||| |||||| || |||||||||||
seq2  GCTATAACCAGACATTTCTTTTCTCATTGGGTTCA-GCCTTGTGATGGCG  699

seq1  GATCTTGATTGTCAA-TCTGACTACATCTAGAA-TCAACTAAAACTCAAG  745
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  GATCTTGATTGTCAATTCTGACTACATCTAGAATTCAACTAAAACTCAAG  749

seq1  CTGCACTTAGCCTCCTTAAGGGCTCACCTTAAAGGCATGAACCACC-ACT  794
      |||||||||||||| ||||||||||||  | ||||||||||||||| |||
seq2  CTGCACTTAGCCTCTTTAAGGGCTCAC--TTAAGGCATGAACCACCAACT  797

seq1  -CACAGAGTG-ACTATAATTTTTATACTATTATTTATATATTAGAATTGA  842
       ||||||||| ||||||   |||||||||||||||||||| ||| ||  |
seq2  CCACAGAGTGAACTATA---TTTATACTATTATTTATATA-TAG-ATGAA  842

seq1  TAATTCTTACAAATTGTCTAATC-TGTGACTGATTGAATTTTCATGAGAT  891
      ||||  |||| ||||| || ||| ||||||||| |||| |||||||||| 
seq2  TAATCTTTAC-AATTGGCTTATCATGTGACTGA-TGAA-TTTCATGAGAA  889

seq1  ATA---TTATGAAATATTATAT  910
      |||   ||||||||||||||||
seq2  ATATATTTATGAAATATTATAT  911