BAC Information

Click to search

BAC

Clone NameB6Ng01-269G10
Chromosome15 (Build37)
Map Location 50,895,378 - 50,968,505
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269G10.bB6Ng01-269G10.g
ACCGA072011GA072012
length1,1521,117
definitionB6Ng01-269G10.b B6Ng01-269G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,895,378 - 50,896,533)(50,967,379 - 50,968,505)
sequence
gaattccattgggaattcctttctccccttattttacattataaacattt
attttcctctttctctttttcttgttcccttttcaggttcctctttcttt
ctctctttctctttctttctttctttctttctttctttctttctttcttt
ctttctttctttccttcctttctttcctttcttccttccttcctttcttt
cttccttcctttgtttctttctttcttccgttctctcctttcttccttcc
ttgcttccttttcttcctcccttccttgatttcttccttccttccttcct
tccttccttccttccttccttcccttcttttttttctcctacccctcagg
ctccaaactctttctgatttctgaaacaggtcagtgcttcccctaagcat
gcttatggaatatgaatatggacaaaaagctctatatttaactaaactat
attttaaaagttcaattaatgattttgtataattttcaatagtcctttgt
tttggggggcttaattctaactctgtgcaaataatcaaattatacactca
acaaaaattattcatctctagggaaattttcatttgctagcaaaaacaca
tctttccccctctaagtcttacattgatttctttttcacttgagtattat
tcttaaaattcagacttttattataactgtaacctatttttagatatata
gaactaaaaggtttttgcaagttaggaaggagcttaaaattttttcataa
agcatacttagtttgttgattatcttatacttattacctggatatatact
ttatctgcttctaaaaacatcagtgaaataaaggtcgaaaaataatataa
ggcattgcaacataataaaagagataaattcaaaatactacatgaaactt
cacgctttttaaacatcatttagatgtgagatggtttcgttaaggggaca
atcaaacgtgggggtcctgaattaaaacaaggagacatactttcccacca
ggccaaagcactgggagaagaatgaagtacacgagtcctctgtgttcttc
ctcttctagtcatcgtggcatgaaactgctgtgcagctcggaaagtcagt
caataactgatacaaaccttctgagtgtggcctagttagactctcaatgg
ta

gaattctctgataacagtggaaaatagactggaaaaacaccttttgtgtt
tgcttcatgttagctatgaggtaaaattaaacgaaatacttaatgagaaa
caaatggaataacattatgctgtatatgtgagtacatgtgatctatagat
aaaatgaaatactgcacagccatgaaaatgaaccaggaatgctggtgtac
atccttaacgccaatacttgatatgcagaagtagagggatcacattgctt
gacatgagcctgaggtacagagtaaggttcattttccaaactccaaggat
tgatgatcgggtggtagactgcttgatttgcatgcacaaagttaaaaaca
gcatggttagctgaggaagaggacacggagtcaaaacggatgtttagatt
ctgtatcaaaaaacgaacctggacttccacttccagctactggtgaagct
gttggaggaatgttattacatcaggactgctcaacacctgctgagtgatt
tcctctttcaccagccttaaatttgcttctctcatcccccaactctgcaa
aatgtaagtgtttccctctgctcaggatggtctggttttagaaacagatc
ctcagatgcactgctgacaagtttcccagatatgctagttcctctgttaa
aaaatctgccagcaccttctccagagcaggcaaccagcatctggccagag
cagacttgagagcattctccttattagtgctctgtttctccttttgttta
gatgcttaaaaggctctgttattgaagcatccttgagccagtttagagtt
tattgtgtgaatagctgctcgctaccacattcatcaaaacatctgagtgg
gtttataccagccatgaaatgtccctttgcattttaactaatggattaat
ggtgctaataaacatttgggaaaaaggaagcaaacacgataggatgttta
ttagacatactctacaatcctgttaaaaataaatgggaatcgtttaatga
ttgagcgtgcttgtttacatttcaaagctgataacttaaattaaatcttt
gtttcttttcatcagtgctgcgagttctctgtcatacttattagacgcat
aataagtttcacgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50895378_50896533
seq2: B6Ng01-269G10.b_42_1193

seq1  GAATTCCATTGGGAATTCCTTTCTCCCCTTATTTTACATTATAAACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGGGAATTCCTTTCTCCCCTTATTTTACATTATAAACATTT  50

seq1  ATTTTCCTCTTTCTCTTTTTCTTGTTCCCTTTTCAGGTTCCTCTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCTTTCTCTTTTTCTTGTTCCCTTTTCAGGTTCCTCTTTCTTT  100

seq1  CTCTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  150

seq1  CTTTCTTTCTTTCCTTCCTTTCTTTCCTTTCTTCCTTCCTTCCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCCTTCCTTTCTTTCCTTTCTTCCTTCCTTCCTTTCTTT  200

seq1  CTTCCTTCCTTTGTTTCTTTCTTTCTTCCGTTCTCTCCTTTCTTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTTGTTTCTTTCTTTCTTCCGTTCTCTCCTTTCTTCCTTCC  250

seq1  TTGCTTCCTTTTCTTCCTCCCTTCCTTGATTTCTTCCTTCCTTCCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTTTTCTTCCTCCCTTCCTTGATTTCTTCCTTCCTTCCTTCCT  300

seq1  TCCTTCCTTCCTTCCTTCCTTCCCTTCTTTTTTTTCTCCTACCCCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCCTTCTTTTTTTTCTCCTACCCCTCAGG  350

seq1  CTCCAAACTCTTTCTGATTTCTGAAACAGGTCAGTGCTTCCCCTAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACTCTTTCTGATTTCTGAAACAGGTCAGTGCTTCCCCTAAGCAT  400

seq1  GCTTATGGAATATGAATATGGACAAAAAGCTCTATATTTAACTAAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGGAATATGAATATGGACAAAAAGCTCTATATTTAACTAAACTAT  450

seq1  ATTTTAAAAGTTCAATTAATGATTTTGTATAATTTTCAATAGTCCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGTTCAATTAATGATTTTGTATAATTTTCAATAGTCCTTTGT  500

seq1  TTTGGGGGGCTTAATTCTAACTCTGTGCAAATAATCAAATTATACACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGCTTAATTCTAACTCTGTGCAAATAATCAAATTATACACTCA  550

seq1  ACAAAAATTATTCATCTCTAGGGAAATTTTCATTTGCTAGCAAAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTATTCATCTCTAGGGAAATTTTCATTTGCTAGCAAAAACACA  600

seq1  TCTTTCCCCCTCTAAGTCTTACATTGATTTCTTTTTCACTTGAGTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCCTCTAAGTCTTACATTGATTTCTTTTTCACTTGAGTATTAT  650

seq1  TCTTAAAATTCAGACTTTTATTATAACTGTAACCTATTTTTAGATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATTCAGACTTTTATTATAACTGTAACCTATTTTTAGATATATA  700

seq1  GAACTAAAAGGTTTTTGCAAGTTAGGAAGGAGCTTAAAATTTTTTCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAGGTTTTTGCAAGTTAGGAAGGAGCTTAAAATTTTTTCATAA  750

seq1  AGCATACTTAGTTTGTTGATTATCTTATACTTATTACCTGGATATATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTTAGTTTGTTGATTATCTTATACTTATTACCTGGATATATACT  800

seq1  TTATCTGCTTCTAAAAACATCAGTGAAAT-AAGGTCGAAAAATAATATAA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTATCTGCTTCTAAAAACATCAGTGAAATAAAGGTCGAAAAATAATATAA  850

seq1  GGCATTGCAACATAATAAAAGAGATAAATTCAAAATACTACATGAAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGCAACATAATAAAAGAGATAAATTCAAAATACTACATGAAACTT  900

seq1  CACGCTTTTTAAACATCATTTAGATGTGAGATGGTTTCGTT-AGGGGACA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACGCTTTTTAAACATCATTTAGATGTGAGATGGTTTCGTTAAGGGGACA  950

seq1  ATCAAACGTGGGGGTCCTGAATTAAAAC-AGGAGACATAC-TTCCCACCA  996
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  ATCAAACGTGGGGGTCCTGAATTAAAACAAGGAGACATACTTTCCCACCA  1000

seq1  GGGCCAAAGCACTGGGAG-AGAATGAAGTACACGGAGTCCTCTGTGTTCT  1045
       ||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  -GGCCAAAGCACTGGGAGAAGAATGAAGTACAC-GAGTCCTCTGTGTTCT  1048

seq1  T-CTC-TCTAGTCATTCCGTGGCATGAAACTGCTGTGCAGCTCGGGAAAG  1093
      | ||| |||||||||  |||||||||||||||||||||||||| ||||||
seq2  TCCTCTTCTAGTCAT--CGTGGCATGAAACTGCTGTGCAGCTC-GGAAAG  1095

seq1  CCAGTCCAATAACTGAGGGCACAACACTTCTGAGTGTGGGCTAAGGTAGG  1143
       |||| ||||||||||    ||||  ||||||||||||| |||  ||  |
seq2  TCAGT-CAATAACTGA---TACAAACCTTCTGAGTGTGGCCTA--GTTAG  1139

seq1  ACTCTCAGTGGTA  1156
      ||||||| |||||
seq2  ACTCTCAATGGTA  1152


seq1: chr15_50967379_50968505
seq2: B6Ng01-269G10.g_60_1176 (reverse)

seq1  ATGTCGTGAAAACTTATTAATGCGTCTAATTAAAGTAATGACAGAGAACC  50
      |||||||| ||||||||| |||||||||||  |||| |||||||||||| 
seq2  ATGTCGTG-AAACTTATT-ATGCGTCTAAT--AAGT-ATGACAGAGAAC-  44

seq1  TCCGCAAGCACCTGATGAAAGAAAACAAAGATTAAATTTAAGTTAATCAG  100
        ||| |||| |||||||||  ||||||||||| |||||||||| |||||
seq2  -TCGC-AGCA-CTGATGAAAAGAAACAAAGATTTAATTTAAGTT-ATCAG  90

seq1  CTTTGAAATGTAAACAAGCACGCTCAATCATTAAACGATT-CCATTTATT  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTGAAATGTAAACAAGCACGCTCAATCATTAAACGATTCCCATTTATT  140

seq1  TTTAACAGGATTGTAGAAGTATGTCTAATAAACATCCTATCGTGTTTGCT  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTAACAGGATTGTAG-AGTATGTCTAATAAACATCCTATCGTGTTTGCT  189

seq1  TCCTTTTTCCCAAATGTTTATTAGCACCATTAATCCATTAGTTAAAATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTCCCAAATGTTTATTAGCACCATTAATCCATTAGTTAAAATGC  239

seq1  AAAGGGACATTTCATGGCTGGTATAAACCCACTCAGATGTTTTGATGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACATTTCATGGCTGGTATAAACCCACTCAGATGTTTTGATGAAT  289

seq1  GTGGTAGCGAGCAGCTATTCACACAATAAACTCTAAACTGGCTCAAGGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCGAGCAGCTATTCACACAATAAACTCTAAACTGGCTCAAGGAT  339

seq1  GCTTCAATAACAGAGCCTTTTAAGCATCTAAACAAAAGGAGAAACAGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATAACAGAGCCTTTTAAGCATCTAAACAAAAGGAGAAACAGAGC  389

seq1  ACTAATAAGGAGAATGCTCTCAAGTCTGCTCTGGCCAGATGCTGGTTGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAGGAGAATGCTCTCAAGTCTGCTCTGGCCAGATGCTGGTTGCC  439

seq1  TGCTCTGGAGAAGGTGCTGGCAGATTTTTTAACAGAGGAACTAGCATATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGAGAAGGTGCTGGCAGATTTTTTAACAGAGGAACTAGCATATC  489

seq1  TGGGAAACTTGTCAGCAGTGCATCTGAGGATCTGTTTCTAAAACCAGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACTTGTCAGCAGTGCATCTGAGGATCTGTTTCTAAAACCAGACC  539

seq1  ATCCTGAGCAGAGGGAAACACTTACATTTTGCAGAGTTGGGGGATGAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGCAGAGGGAAACACTTACATTTTGCAGAGTTGGGGGATGAGAG  589

seq1  AAGCAAATTTAAGGCTGGTGAAAGAGGAAATCACTCAGCAGGTGTTGAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTTAAGGCTGGTGAAAGAGGAAATCACTCAGCAGGTGTTGAGC  639

seq1  AGTCCTGATGTAATAACATTCCTCCAACAGCTTCACCAGTAGCTGGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGATGTAATAACATTCCTCCAACAGCTTCACCAGTAGCTGGAAGT  689

seq1  GGAAGTCCAGGTTCGTTTTTTGATACAGAATCTAAACATCCGTTTTGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCAGGTTCGTTTTTTGATACAGAATCTAAACATCCGTTTTGACT  739

seq1  CCGTGTCCTCTTCCTCAGCTAACCATGCTGTTTTTAACTTTGTGCATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCCTCTTCCTCAGCTAACCATGCTGTTTTTAACTTTGTGCATGCA  789

seq1  AATCAAGCAGTCTACCACCCGATCATCAATCCTTGGAGTTTGGAAAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCAGTCTACCACCCGATCATCAATCCTTGGAGTTTGGAAAATGA  839

seq1  ACCTTACTCTGTACCTCAGGCTCATGTCAAGCAATGTGATCCCTCTACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTCTGTACCTCAGGCTCATGTCAAGCAATGTGATCCCTCTACTT  889

seq1  CTGCATATCAAGTATTGGCGTTAAGGATGTACACCAGCATTCCTGGTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATCAAGTATTGGCGTTAAGGATGTACACCAGCATTCCTGGTTCA  939

seq1  TTTTCATGGCTGTGCAGTATTTCATTTTATCTATAGATCACATGTACTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGGCTGTGCAGTATTTCATTTTATCTATAGATCACATGTACTCA  989

seq1  CATATACAGCATAATGTTATTCCATTTGTTTCTCATTAAGTATTTCGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAGCATAATGTTATTCCATTTGTTTCTCATTAAGTATTTCGTTT  1039

seq1  AATTTTACCTCATAGCTAACATGAAGCAAACACAAAAGGTGTTTTTCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACCTCATAGCTAACATGAAGCAAACACAAAAGGTGTTTTTCCAG  1089

seq1  TCTATTTTCCACTGTTATCAGAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  TCTATTTTCCACTGTTATCAGAGAATTC  1117


| Home | SequenceCutter | Blast | Download |