BAC Information

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BAC

Clone NameB6Ng01-270A04
Chromosome15 (Build37)
Map Location 38,428,768 - 38,615,364
singlet/doubletdoublet
Overlap geneAzin1, Siah1-ps2, Atp6v1c1
Upstream geneNcald, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10
Downstream geneBaalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A04.bB6Ng01-270A04.g
ACCGA072463GA072464
length1,201462
definitionB6Ng01-270A04.b B6Ng01-270A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,428,768 - 38,429,977)(38,614,897 - 38,615,364)
sequence
gaattcacattttggtaatgcttccccacacttgtgttttaaaaacaaat
aggaccagtgagctagctgagcctaagggcataatgttgccaagtctgat
tacctgagttcaatcccctggacctatatagtagaacaatgaacctatca
aagagctgtcctgactttcacaggtgcactggaacttgtgaacattcaca
caaaactacagtaaaatttaaaaatacaatcttacacacacacacacaca
cacacacacacacacacacacacacacacgtatgtgtgtgtgttctcccc
ctctctctggaacctcagaagctagacacactggatcccctggaggtgga
gttacaggtaggtggttgtgatctgctgggtgctgggaaaggagcatgca
ctcttaactactgagccacgtcttctaccctcacaaaagacacttaacag
gagcaatctcaaaggttatatttactgcagtcaaaagtctcttagaacag
gactggagctatagcgcaattgttaaacactctaagctctgggttttggt
tcacagaaccatatgaattgggtgtagtagcacttatccctagcacccgg
aaggtagagataagaggagcagaaattcaaagacatcttcagctgcatag
agttttaaaaccatcttgagttgtttcaaaagaaacagagattctgtttc
aaaagaaaagtacaaagagaaaaagagtagatcgcctaagaatgggagtt
cccataccctaggctggctcaaactcattatgtcactaagactagctttg
aactcctgaacctgcatctaactccaaaacgctggaattaaagaaacaac
tatcatagctaacaataaagaacattgctactcttgcatagaacctaggt
ctgattcccagcactatttacgtggaactgtacaatcaaccttaactcta
ttccagggactccaacaaccacttctgggcctctgtcagtagcagtaagc
aatgtgtatatatacaaacaccacagataaaaaatattttaaaataaaaa
aaataaatttttaaatattcttgaataaatgtttctcaagtcaccagtgt
taacattcctttttatcaatacactggaaaattgagacttcttatggatt
agtgtagcaaggactccagtaaatagttatttaaaccccaaacattcaaa
c
taagctagcctgcactacagaaagagaatctttctcaaaaggaatccaaa
atctaggtaagatgatacccacgtatgcactatctagctaagatggtatt
actcagcccttgggaggcagagttgaaaggatcatgagccccaagccaga
cctggctacacatatgtcaagcttggcctggtggaacatacagcccttga
gagatagagacaggcaaagtatgagttcaggccagcctgggctacatgag
aaactgtctcaatagaaataaaaagaaaaggaaaggagagagggaaggag
ggagggaggaaagaatagaggaagggaaggagggcgggcaggcaggtgat
caagtgatactatctatgtttttttaatacttatttctattttgagtact
ggtgtttgcctggatatatgtgtgtgcatcatgtgtgtgtgtatgtggta
ccattggaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_38428768_38429977
seq2: B6Ng01-270A04.b_43_1243

seq1  GAATTCACATTTTGGTAATGCTTCCCCACACTTGTGTTTTAAAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTGGTAATGCTTCCCCACACTTGTGTTTTAAAAACAAAT  50

seq1  AGGACCAGTGAGCTAGCTGAGCCTAAGGGCATAATGTTGCCAAGTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGTGAGCTAGCTGAGCCTAAGGGCATAATGTTGCCAAGTCTGAT  100

seq1  TACCTGAGTTCAATCCCCTGGACCTATATAGTAGAACAATGAACCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGTTCAATCCCCTGGACCTATATAGTAGAACAATGAACCTATCA  150

seq1  AAGAGCTGTCCTGACTTTCACAGGTGCACTGGAACTTGTGAACATTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGTCCTGACTTTCACAGGTGCACTGGAACTTGTGAACATTCACA  200

seq1  CAAAACTACAGTAAAATTTAAAAATACAATCTTACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTACAGTAAAATTTAAAAATACAATCTTACACACACACACACACA  250

seq1  CACACACACACACACACACACACACACACGTATGTGTGTGTGTTCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACGTATGTGTGTGTGTTCTCCCC  300

seq1  CTCTCTCTGGAACCTCAGAAGCTAGACACACTGGATCCCCTGGAGGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGGAACCTCAGAAGCTAGACACACTGGATCCCCTGGAGGTGGA  350

seq1  GTTACAGGTAGGTGGTTGTGATCTGCTGGGTGCTGGGAAAGGAGCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGTAGGTGGTTGTGATCTGCTGGGTGCTGGGAAAGGAGCATGCA  400

seq1  CTCTTAACTACTGAGCCACGTCTTCTACCCTCACAAAAGACACTTAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTACTGAGCCACGTCTTCTACCCTCACAAAAGACACTTAACAG  450

seq1  GAGCAATCTCAAAGGTTATATTTACTGCAGTCAAAAGTCTCTTAGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATCTCAAAGGTTATATTTACTGCAGTCAAAAGTCTCTTAGAACAG  500

seq1  GACTGGAGCTATAGCGCAATTGTTAAACACTCTAAGCTCTGGGTTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGCTATAGCGCAATTGTTAAACACTCTAAGCTCTGGGTTTTGGT  550

seq1  TCACAGAACCATATGAATTGGGTGTAGTAGCACTTATCCCTAGCACCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACCATATGAATTGGGTGTAGTAGCACTTATCCCTAGCACCCGG  600

seq1  AAGGTAGAGATAAGAGGAGCAGAAATTCAAAGACATCTTCAGCTGCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGATAAGAGGAGCAGAAATTCAAAGACATCTTCAGCTGCATAG  650

seq1  AGTTTTAAAACCATCTTGAGTTGTTTCAAAAGAAACAGAGATTCTGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAACCATCTTGAGTTGTTTCAAAAGAAACAGAGATTCTGTTTC  700

seq1  AAAAGAAAAGTACAAAGAGAAAAAGAGTAGATCGCCTAAGAATGGGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGTACAAAGAGAAAAAGAGTAGATCGCCTAAGAATGGGAGTT  750

seq1  CCCATACCCTAGGCTGGCTCAAACTCATTATGTCACTAAGACTAGCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCCTAGGCTGGCTCAAACTCATTATGTCACTAAGACTAGCTTTG  800

seq1  AACTCCTGAACCTGCATCTAACTCCAAAACGCTGGAATTAAAGAAACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGAACCTGCATCTAACTCCAAAACGCTGGAATTAAAGAAACAAC  850

seq1  TATCATAGCTAACAATAAAGAACATTGCTACTCTTGCATAGAACCTAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGCTAACAATAAAGAACATTGCTACTCTTGCATAGAACCTAGGT  900

seq1  CTGATTCCCAGCACTATTTACGTGGAACTGTACAATCAACCTTAACTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCCAGCACTATTTACGTGGAACTGTACAATCAACCTTAACTCTA  950

seq1  TTCCCAGGGACTCCAACAACCACTTCT-GGCCTCTGTCAGTAGCAGGTAA  999
      || |||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TT-CCAGGGACTCCAACAACCACTTCTGGGCCTCTGTCAGTAGCA-GTAA  998

seq1  GCAATGTGGTATATATACAAACA-CACAGATAAAAAAAATAATTTTAAAA  1048
      ||||||| ||||||||||||||| |||||||||||||    |||||||||
seq2  GCAATGT-GTATATATACAAACACCACAGATAAAAAA---TATTTTAAAA  1044

seq1  T-AAAAAAATAAATTTTTTAAAATATTCTTGATAAAAATGTTTCTCCAAA  1097
      | ||||||||||||||||  |||||||||||| | |||||||||||  ||
seq2  TAAAAAAAATAAATTTTT--AAATATTCTTGA-ATAAATGTTTCTC--AA  1089

seq1  GTTCACCAGTG-TAACA-TCCCTTTTATCAATACACTTGAAAAATTAGAC  1145
      | ||||||||| ||||| ||| ||||||||||||||| ||||| | ||||
seq2  G-TCACCAGTGTTAACATTCCTTTTTATCAATACACTGGAAAATTGAGAC  1138

seq1  TTCCTATGATTAAGTGTAGCAAAGGACTCCATTTAAATAGTTATTTAAAA  1195
      ||| ||||  | |||||||| ||||||||||  ||||||||||||| |||
seq2  TTCTTATGGATTAGTGTAGC-AAGGACTCCA-GTAAATAGTTATTT-AAA  1185

seq1  ACCCAAACA-TCAAAC  1210
       |||||||| ||||||
seq2  CCCCAAACATTCAAAC  1201

seq1: chr15_38614897_38615364
seq2: B6Ng01-270A04.g_62_529 (reverse)

seq1  GACCTCCAATGGTACCACATACACACACACATGATGCACAGACATATATC  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACCTCCAATGGTACCACATACACACACACATGATGCACACACATATATC  50

seq1  CAGGCAAACACCAGTACTCAAAATAGAAATAAGTATTAAAAAAACATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAACACCAGTACTCAAAATAGAAATAAGTATTAAAAAAACATAGA  100

seq1  TAGTATCACTTGATCACCTGCCTGCCCGCCCTCCTTCCCTTCCTCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCACTTGATCACCTGCCTGCCCGCCCTCCTTCCCTTCCTCTATTC  150

seq1  TTTCCTCCCTCCCTCCTTCCCTCTCTCCTTTCCTTTTCTTTTTATTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCCTCCCTCCTTCCCTCTCTCCTTTCCTTTTCTTTTTATTTCTA  200

seq1  TTGAGACAGTTTCTCATGTAGCCCAGGCTGGCCTGAACTCATACTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGTTTCTCATGTAGCCCAGGCTGGCCTGAACTCATACTTTGCC  250

seq1  TGTCTCTATCTCTCAAGGGCTGTATGTTCCACCAGGCCAAGCTTGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTATCTCTCAAGGGCTGTATGTTCCACCAGGCCAAGCTTGACATA  300

seq1  TGTGTAGCCAGGTCTGGCTTGGGGCTCATGATCCTTTCAACTCTGCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCAGGTCTGGCTTGGGGCTCATGATCCTTTCAACTCTGCCTCC  350

seq1  CAAGGGCTGAGTAATACCATCTTAGCTAGATAGTGCATACGTGGGTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTGAGTAATACCATCTTAGCTAGATAGTGCATACGTGGGTATCA  400

seq1  TCTTACCTAGATTTTGGATTCCTTTTGAGAAAGATTCTCTTTCTGTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTAGATTTTGGATTCCTTTTGAGAAAGATTCTCTTTCTGTAGTG  450

seq1  CAGGCTAGCTTAGAATTC  468
      ||||||||||||||||||
seq2  CAGGCTAGCTTAGAATTC  468