BAC Information

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BAC

Clone NameB6Ng01-270B05
Chromosome15 (Build37)
Map Location 102,947,282 - 103,119,714
singlet/doubletdoublet
Overlap geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1
Upstream geneSpryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Downstream geneGpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270B05.bB6Ng01-270B05.g
ACCGA072511GA072512
length1,214894
definitionB6Ng01-270B05.b B6Ng01-270B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,118,511 - 103,119,714)(102,947,282 - 102,948,171)
sequence
gaattcccaaaatcatcacactcctgaagaatttgagttagaatggccaa
ttctgctatttaagtatccaatgtttctgtcctgctcctaaattaatata
aaggcaaatctcaccttggcgaagagtcggtctccatcattgtccagaat
caggatggccttgacagtgtacagggagggctcctgaagaaacatgaacg
tatcttcagttctgagagcatcactactagcaagcctaataccttccttc
cctggttccactgagctgcagagtcacacaggggtttgtgtgtcccctac
tgcggcatgattaggtctaatacctcccccctgagaataaccaaggccca
gagagactgtctcaggctcacagcccttcaccatgctcttatttccagat
cctaaggccttgcaggtcattttctcagtcacccagtctctctggcgtcc
tgaacacaggtgggcatggaacgtgaccatgctaataaacaggcactgct
catctgaaagagggttgaatgcccttggaagtcactgcagtcccaaagca
gcagcttaaagcaagccactctaagccatccacacacagagcaggactgt
gcattcacacacactggttctaagacagacatcatccaaaagttcacata
tgaaacccttcctcgatatatatgaaccctcacgacttaatcggatagga
taaaaatcaacctgaatcttaagtgtggcaaacagaaaaatatttgagac
gtccggagtctgagaggtagctaaaataacaaggggagttttcttccact
accaagaatggaactaagtactcagtgccatggggcatgtttgtgtgcag
ggagccctgggtccctgtaaaacagaacaaaaccccagaatgacacagac
ttgctgatactggctctcatgaagccatcacaacttagctgtaatggtta
cactttaacacctttcttcaattgcaaacagatgacttagaaaagcttat
tgagcctggtgtctctctctatctcacaactttcaggaagaaaaaggaaa
gtgagagcagctggcatgtgcacagcagccttccgccacctcacaagaat
tgagggtcttcaccaagaactacctctcactaacttctggtccaagggca
gactattctatctgctttgcctctcctggcttagaaaaaaaactcaccca
atctctttcaaaaa
gaattcaaaggggacatagaatggaaccatccagaagtaagggcactagg
ggcaccttgagcagtgggccagaaggtgggtgaagtgctagaccaggtat
gacaaatgttggaagaaagtgggcactggactgaatcagggaggtggaaa
cagctccatgcccttttcctatagtattgctgttgagtccacagatcctg
ctccgtgcattgtcaggacaaggcatactttggaatcacatgagtcctga
aggacagttagttttcaggtggcctctcacctccctcttatccagcctgg
cacagatagattgggtggtatagtgatgggtggaaggaatagggtacctc
tacctgaatgttttcatattcccccacgtcctcttcagtaggcaataatt
ctcactgtgcctggtcttatataccccatatgtcttgagctcagagagct
aagaaacaccccatcattcttaagccatgcctcacccccacccccgctct
ctccatacttctttctgaacaggggcctataagggaccttcacagctgga
cagcagctggaggccccacatcttctgtgcactcaaaatgacttctacag
gggaacctacagccagaggaggaggggacaactccaacagtatgtgctcc
acctgacctgctcaggtctggggcgtagcaaatgcccagccagtgagctt
agccaagtggtactcagtggctcatgcctatcatcccagcactccagaaa
ctgaagaacagatgtgcttatgagttcaaggtcaacccaaagtccacaca
gtgagtttttaggtagctcgggctgcagcattgaaatattgtccagggca
aggagttattcctggtgtctctctggccaggatggccagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103118511_103119714
seq2: B6Ng01-270B05.b_47_1260 (reverse)

seq1  TTTTTGA---AGA-TGGGTGAG----TTTTCTAAGACCAGGAGA-GCAAA  41
      |||||||   ||| ||||||||    ||||||||| |||||||| |||||
seq2  TTTTTGAAAGAGATTGGGTGAGTTTTTTTTCTAAG-CCAGGAGAGGCAAA  49

seq1  GCAGATAG-ATAGTCTTGCCTTGGACCAG-AGGTAGTGAGAAGTAG-TCT  88
      |||||||| |||||||  ||||||||||| || |||||||| |||| |||
seq2  GCAGATAGAATAGTCTGCCCTTGGACCAGAAGTTAGTGAGAGGTAGTTCT  99

seq1  TGGTG-AGA-CCTCAAATTCTGTGA-GTGGCGGAGGCCTGCTGTGCACAA  135
      ||||| ||| |||||| |  ||||| |||||||| | ||||||||||| |
seq2  TGGTGAAGACCCTCAATTCTTGTGAGGTGGCGGAAGGCTGCTGTGCAC-A  148

seq1  TGCCAGCTGCTCTCACTTTCCTTTTTCCTTCTGAAAGTTGTGAGAATAGA  185
      ||||||||||||||||||||||||||| | |||||||||||||| |||||
seq2  TGCCAGCTGCTCTCACTTTCCTTTTTCTTCCTGAAAGTTGTGAG-ATAGA  197

seq1  GAAGAGAACACCAGGCTCAAT-AGCTTTTCCTAAGTCATCTGTTTGCAAT  234
      | |||| |||||||||||||| ||||||| ||||||||||||||||||||
seq2  G-AGAG-ACACCAGGCTCAATAAGCTTTT-CTAAGTCATCTGTTTGCAAT  244

seq1  TGAAGAAAGGTGTTAAAGTGTAACCATTACAGCTAAGTTGTGATGGCTTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGGTGTTAAAGTGTAACCATTACAGCTAAGTTGTGATGGCTTC  294

seq1  ATGAGAGCCAGTATCAGCAAGTCTGTGTCATTCTGGGGTTTTGTTCTGTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGCCAGTATCAGCAAGTCTGTGTCATTCTGGGGTTTTGTTCTGTT  344

seq1  TTACAGGGACCCAGGGCTCCCTGCACACAAACATGCCCCATGGCACTGAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGACCCAGGGCTCCCTGCACACAAACATGCCCCATGGCACTGAG  394

seq1  TACTTAGTTCCATTCTTGGTAGTGGAAGAAAACTCCCCTTGTTATTTTAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTTCCATTCTTGGTAGTGGAAGAAAACTCCCCTTGTTATTTTAG  444

seq1  CTACCTCTCAGACTCCGGACGTCTCAAATATTTTTCTGTTTGCCACACTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTCAGACTCCGGACGTCTCAAATATTTTTCTGTTTGCCACACTT  494

seq1  AAGATTCAGGTTGATTTTTATCCTATCCGATTAAGTCGTGAGGGTTCATA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGGTTGATTTTTATCCTATCCGATTAAGTCGTGAGGGTTCATA  544

seq1  TATATCGAGGAAGGGTTTCATATGTGAACTTTTGGATGATGTCTGTCTTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCGAGGAAGGGTTTCATATGTGAACTTTTGGATGATGTCTGTCTTA  594

seq1  GAACCAGTGTGTGTGAATGCACAGTCCTGCTCTGTGTGTGGATGGCTTAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTGTGTGTGAATGCACAGTCCTGCTCTGTGTGTGGATGGCTTAG  644

seq1  AGTGGCTTGCTTTAAGCTGCTGCTTTGGGACTGCAGTGACTTCCAAGGGC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGCTTTAAGCTGCTGCTTTGGGACTGCAGTGACTTCCAAGGGC  694

seq1  ATTCAACCCTCTTTCAGATGAGCAGTGCCTGTTTATTAGCATGGTCACGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCCTCTTTCAGATGAGCAGTGCCTGTTTATTAGCATGGTCACGT  744

seq1  TCCATGCCCACCTGTGTTCAGGACGCCAGAGAGACTGGGTGACTGAGAAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCCACCTGTGTTCAGGACGCCAGAGAGACTGGGTGACTGAGAAA  794

seq1  ATGACCTGCAAGGCCTTAGGATCTGGAAATAAGAGCATGGTGAAGGGCTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGCAAGGCCTTAGGATCTGGAAATAAGAGCATGGTGAAGGGCTG  844

seq1  TGAGCCTGAGACAGTCTCTCTGGGCCTTGGTTATTCTCAGGGGGGAGGTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGAGACAGTCTCTCTGGGCCTTGGTTATTCTCAGGGGGGAGGTA  894

seq1  TTAGACCTAATCATGCCGCAGTAGGGGACACACAAACCCCTGTGTGACTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCTAATCATGCCGCAGTAGGGGACACACAAACCCCTGTGTGACTC  944

seq1  TGCAGCTCAGTGGAACCAGGGAAGGAAGGTATTAGGCTTGCTAGTAGTGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCAGTGGAACCAGGGAAGGAAGGTATTAGGCTTGCTAGTAGTGA  994

seq1  TGCTCTCAGAACTGAAGATACGTTCATGTTTCTTCAGGAGCCCTCCCTGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAGAACTGAAGATACGTTCATGTTTCTTCAGGAGCCCTCCCTGT  1044

seq1  ACACTGTCAAGGCCATCCTGATTCTGGACAATGATGGAGACCGACTCTTC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCAAGGCCATCCTGATTCTGGACAATGATGGAGACCGACTCTTC  1094

seq1  GCCAAGGTGAGATTTGCCTTTATATTAATTTAGGAGCAGGACAGAAACAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTGAGATTTGCCTTTATATTAATTTAGGAGCAGGACAGAAACAT  1144

seq1  TGGATACTTAAATAGCAGAATTGGCCATTCTAACTCAAATTCTTCAGGAG  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTTAAATAGCAGAATTGGCCATTCTAACTCAAATTCTTCAGGAG  1194

seq1  TGTGATGATTTTGGGAATTC  1204
      ||||||||||||||||||||
seq2  TGTGATGATTTTGGGAATTC  1214

seq1: chr15_102947282_102948171
seq2: B6Ng01-270B05.g_64_957

seq1  GAATTCAAAGGGGACATAGAATGGAACCATCCAGAAGTAAGGGCACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGGACATAGAATGGAACCATCCAGAAGTAAGGGCACTAGG  50

seq1  GGCACCTTGAGCAGTGGGCCAGAAGGTGGGTGAAGTGCTAGACCAGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTGAGCAGTGGGCCAGAAGGTGGGTGAAGTGCTAGACCAGGTAT  100

seq1  GACAAATGTTGGAAGAAAGTGGGCACTGGACTGAATCAGGGAGGTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGTTGGAAGAAAGTGGGCACTGGACTGAATCAGGGAGGTGGAAA  150

seq1  CAGCTCCATGCCCTTTTCCTATAGTATTGCTGTTGAGTCCACAGATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCATGCCCTTTTCCTATAGTATTGCTGTTGAGTCCACAGATCCTG  200

seq1  CTCCGTGCATTGTCAGGACAAGGCATACTTTGGAATCACATGAGTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGCATTGTCAGGACAAGGCATACTTTGGAATCACATGAGTCCTGA  250

seq1  AGGACAGTTAGTTTTCAGGTGGCCTCTCACCTCCCTCTTATCCAGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTTAGTTTTCAGGTGGCCTCTCACCTCCCTCTTATCCAGCCTGG  300

seq1  CACAGATAGATTGGGTGGTATAGTGATGGGTGGAAGGAATAGGGTACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAGATTGGGTGGTATAGTGATGGGTGGAAGGAATAGGGTACCTC  350

seq1  TACCTGAATGTTTTCATATTCCCCCACGTCCTCTTCAGTAGGCAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAATGTTTTCATATTCCCCCACGTCCTCTTCAGTAGGCAATAATT  400

seq1  CTCACTGTGCCTGGTCTTATATACCCCATATGTCTTGAGCTCAGAGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTGCCTGGTCTTATATACCCCATATGTCTTGAGCTCAGAGAGCT  450

seq1  AAGAAACACCCCATCATTCTTAAGCCATGCCTCACCCCCACCCCCGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACCCCATCATTCTTAAGCCATGCCTCACCCCCACCCCCGCTCT  500

seq1  CTCCATACTTCTTTCTGAACAGGGGCCTATAAGGGACCTTCACAGCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATACTTCTTTCTGAACAGGGGCCTATAAGGGACCTTCACAGCTGGA  550

seq1  CAGCAGCTGGAGGCCCCACATCTTCTGTGCACTCAAAATGACTTCTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGGAGGCCCCACATCTTCTGTGCACTCAAAATGACTTCTACAG  600

seq1  GGGAACCTACAGCCAGAGGAGGAGGGGACAACTCCAACAGTATGTGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTACAGCCAGAGGAGGAGGGGACAACTCCAACAGTATGTGCTCC  650

seq1  ACCTGACCTGCTCAGGTCTGGGGCGTAGCAAATGCCCAGCCAGTGAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACCTGCTCAGGTCTGGGGCGTAGCAAATGCCCAGCCAGTGAGCTT  700

seq1  AGCCAAGTGGTACTCAGTGGCTCATGCCTATCATCCCAGCACTCCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTGGTACTCAGTGGCTCATGCCTATCATCCCAGCACTCCAGAAA  750

seq1  CTGAAGAACAGATGTGCTTATGAGTTCAAGGCCAACCCAA--GCCACACA  798
      ||||||||||||||||||||||||||||||| ||||||||   |||||||
seq2  CTGAAGAACAGATGTGCTTATGAGTTCAAGGTCAACCCAAAGTCCACACA  800

seq1  GTGAG-TTTTAGGTAGCTTGGGCTGCAG-AGTGAAATATTGTCCAGGGCA  846
      ||||| |||||||||||| ||||||||| | |||||||||||||||||||
seq2  GTGAGTTTTTAGGTAGCTCGGGCTGCAGCATTGAAATATTGTCCAGGGCA  850

seq1  AGGGGTTATTCCTGGTGTCTCTGTGGCAGGGATGGCCAGTGGGG  890
      ||| |||||||||||||||||| ||||  |||||||||||||||
seq2  AGGAGTTATTCCTGGTGTCTCTCTGGCCAGGATGGCCAGTGGGG  894