BAC Information

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BAC

Clone NameB6Ng01-270E13
Chromosome15 (Build37)
Map Location 20,448,690 - 20,449,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270E13.bB6Ng01-270E13.g
ACCGA072664GA072665
length1,1611,198
definitionB6Ng01-270E13.b B6Ng01-270E13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaggtctatataaaattcacacatatgtatacataacatat
acatgttcactccttgatttttacttttcatgaagtcattttttctttac
atcagagacataaaaatctgattcaaatcccaaactcacagaacagcatc
aaaagcaccaacagtatagtccaatataaaacacatttaaatgtaaatta
tatattacagcacagtatgaaagtttcatatgttttatataaacatccta
tgaaaataaaagtattaatattaaataatagtctagaagtttgtttttag
actttttagcaaaaaaattcatgattgctaaactaaattgcttacatatg
ttcaacttatagagataataaattgaatgtatttttttttcttctgccaa
gaatgaatggtgggcagtaacagtgatcaaccactgataaatatttagaa
tatgtcatgactatgcagctgttagaggaataataataaaaacaaccctg
tgtattttctaaaatgggaaggctacatcagaggatacaagtgaaaatac
ttcctgaataatttgtaatttctgactttataatacataatattgccaat
gacttgttaaaatgtataagtgcatttgtattaccttgttagagttaatg
gcttagaaaataatacaatgaaattgtcatagaggaatggctattatact
tttatttgcagtctgatgatgagatattactgcaaagaaacttttacatg
aaatgtttcttagaaataccactcgtctttaactacttattgcaaaccca
aaataccattcttttccaatctccagacaataattgtgtccatttatcac
aaagcagtccttgtatcaccttaatgaatatgttttaaagaagtttatca
cttgctttatattagaaatataaatatgcatacatatatgtacacatatg
aacacacaaattttcagaaacacaaatcttttcttctgttaactaaaaca
atcttgtgtattccttttgtttaggagaaaagatctgtgaatccaatatt
gtattcaaattatggtatcataaaaaaaaagaaaacagtctgctcttttg
tcatgttgttgaaagccaattgctgtaagcaattgtacttgttctttttc
ttgtgaacaag
gaattcaacaggtagcaagatacctctcctttaaaattataggtaaaaag
aaataaagatttgtctgtttttaaaaatgtagatatatgtcaccactata
tatatatatatatatacacatatatatatgttaacatatatataataata
tgttagcatattctatgctgtgcctataacatattaatttataataaatg
atatctggttaataatattggtaacagaaagttggtttaaaacaactcag
agttaaagccaccctgaataacaattgccaaacaaggtctctaaaggtac
atttaaaataggataatattttctcctaagaaccagcctgaaaaagtagg
atttaaaaatgttttttttatgagttattaaagctgcaccttcatgtgtt
catatacaagaactggcagccaaacattgtaacatgaaaataatatactt
gatattgatttgaggaactggattgtttcaactgcttaaaaatttaaaaa
ttggttttgtcttcgaaaatttatggctatgctctttgatatcactgttt
taaaaggagatactttattttgatattatgaaaggaacttttaatatata
tatatatgtacatatatacttatatatgtatataactcagtaattttaaa
atttactaaataattaaaatgtctttattggtatgatggttacagtaaaa
aaatgctttattggacaacaacaatgaggttataatatatgggatggagg
agataattttgatggagaaagcttaagcattacctataatgatggctata
aatcagatgatcagaaatagtgaatacggtagcaaaagcttttaaaatta
aaaacaaaacaggctacagttcctatcaggagagaaaagaaaggagtttg
tcaaggaaagctgcaggcttccttgaagacaattccttccaatgcattag
aaaaaatcgtaaaaattctgccacatgaaagatgtcgatcctaagttcag
aaaaagcacttgcagctaaatagaaaaactctcttgtacaagttagtcat
agccacaggttgcaaaagtacagcctatggatattaaccaaatataacta
gattatacagtcttgagccttttaatctcgtgctgtcttttaacttaaat
actgtcacctaaaatattaattgcaagaggccatcagctaattactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20448690_20449849
seq2: B6Ng01-270E13.b_45_1205 (reverse)

seq1  CTTGTTCTACAAAAGAAAAGACAAAGTTACAATTTGCTTACCCAGCAA-T  49
      ||||||| |||| | ||||||  ||| ||||| |||||||  |||||| |
seq2  CTTGTTC-ACAAGA-AAAAGAACAAG-TACAA-TTGCTTA--CAGCAATT  44

seq1  GGCTTTCA--CACATGACCAAAGAGCAGGACTGTTT--CTTTTTTTTATG  95
      ||||||||   ||||||| |||||||| ||||||||   |||||||||||
seq2  GGCTTTCAACAACATGACAAAAGAGCA-GACTGTTTTCTTTTTTTTTATG  93

seq1  ATACCAT-ATTTGAATACATATTTGGAATCACAGATC-TTTCTCCTAAAC  143
      ||||||| |||||||||||   ||||| ||||||||| ||||||||||||
seq2  ATACCATAATTTGAATACAATATTGGATTCACAGATCTTTTCTCCTAAAC  143

seq1  AAAAGGAATACACAAGATTGTTTTAGTTAACAGAAG-AAAGATTTGTGTT  192
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAGGAATACACAAGATTGTTTTAGTTAACAGAAGAAAAGATTTGTGTT  193

seq1  TCTGAAAATTTGTGTGTTCATATGTGTACATATATGTATGCATATTTATA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATTTGTGTGTTCATATGTGTACATATATGTATGCATATTTATA  243

seq1  TTTCTAATATAAAGCAAGTGATAAACTTCTTTAAAACATATTCATTAAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATATAAAGCAAGTGATAAACTTCTTTAAAACATATTCATTAAGG  293

seq1  TGATACAAGGACTGCTTTGTGATAAATGGACACAATTATTGTCTGGAGAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAGGACTGCTTTGTGATAAATGGACACAATTATTGTCTGGAGAT  343

seq1  TGGAAAAGAATGGTATTTTGGGTTTGCAATAAGTAGTTAAAGACGAGTGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGAATGGTATTTTGGGTTTGCAATAAGTAGTTAAAGACGAGTGG  393

seq1  TATTTCTAAGAAACATTTCATGTAAAAGTTTCTTTGCAGTAATATCTCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAGAAACATTTCATGTAAAAGTTTCTTTGCAGTAATATCTCAT  443

seq1  CATCAGACTGCAAATAAAAGTATAATAGCCATTCCTCTATGACAATTTCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACTGCAAATAAAAGTATAATAGCCATTCCTCTATGACAATTTCA  493

seq1  TTGTATTATTTTCTAAGCCATTAACTCTAACAAGGTAATACAAATGCACT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTATTTTCTAAGCCATTAACTCTAACAAGGTAATACAAATGCACT  543

seq1  TATACATTTTAACAAGTCATTGGCAATATTATGTATTATAAAGTCAGAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTAACAAGTCATTGGCAATATTATGTATTATAAAGTCAGAAA  593

seq1  TTACAAATTATTCAGGAAGTATTTTCACTTGTATCCTCTGATGTAGCCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTATTCAGGAAGTATTTTCACTTGTATCCTCTGATGTAGCCTT  643

seq1  CCCATTTTAGAAAATACACAGGGTTGTTTTTATTATTATTCCTCTAACAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTAGAAAATACACAGGGTTGTTTTTATTATTATTCCTCTAACAG  693

seq1  CTGCATAGTCATGACATATTCTAAATATTTATCAGTGGTTGATCACTGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGTCATGACATATTCTAAATATTTATCAGTGGTTGATCACTGTT  743

seq1  ACTGCCCACCATTCATTCTTGGCAGAAGAAAAAAAAATACATTCAATTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCACCATTCATTCTTGGCAGAAGAAAAAAAAATACATTCAATTTA  793

seq1  TTATCTCTATAAGTTGAACATATGTAAGCAATTTAGTTTAGCAATCATGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTATAAGTTGAACATATGTAAGCAATTTAGTTTAGCAATCATGA  843

seq1  ATTTTTTTGCTAAAAAGTCTAAAAACAAACTTCTAGACTATTATTTAATA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGCTAAAAAGTCTAAAAACAAACTTCTAGACTATTATTTAATA  893

seq1  TTAATACTTTTATTTTCATAGGATGTTTATATAAAACATATGAAACTTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTTTTATTTTCATAGGATGTTTATATAAAACATATGAAACTTTC  943

seq1  ATACTGTGCTGTAATATATAATTTACATTTAAATGTGTTTTATATTGGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGCTGTAATATATAATTTACATTTAAATGTGTTTTATATTGGAC  993

seq1  TATACTGTTGGTGCTTTTGATGCTGTTCTGTGAGTTTGGGATTTGAATCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTTGGTGCTTTTGATGCTGTTCTGTGAGTTTGGGATTTGAATCA  1043

seq1  GATTTTTATGTCTCTGATGTAAAGAAAAAATGACTTCATGAAAAGTAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATGTCTCTGATGTAAAGAAAAAATGACTTCATGAAAAGTAAAA  1093

seq1  ATCAAGGAGTGAACATGTATATGTTATGTATACATATGTGTGAATTTTAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAGTGAACATGTATATGTTATGTATACATATGTGTGAATTTTAT  1143

seq1  ATAGACCTTAATGAATTC  1160
      ||||||||||||||||||
seq2  ATAGACCTTAATGAATTC  1161