BAC Information

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BAC

Clone NameB6Ng01-270I06
Chromosome15 (Build37)
Map Location 22,794,825 - 22,873,594
singlet/doubletdoublet
Overlap geneCdh18
Upstream geneLOC100040351, EG545091
Downstream geneLOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270I06.bB6Ng01-270I06.g
ACCGA072835GA072836
length1,096360
definitionB6Ng01-270I06.b B6Ng01-270I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,794,825 - 22,795,925)(22,873,189 - 22,873,594)
sequence
gaattcagttaataagatttcttgcattattctagtgttttaagacagac
ctatgttgagaagacctgggtttgctctgacaacaacagtattgcttgtg
ctcgctcctaacagtgtaccatcctggtactctgagtgtctctctctctt
ttcttgctatcatggagacataactgacatctttggtagcatgccaattt
tcacaattctaaagacattccaagacaagttgatcattggtatctcctga
aggcctatggctgccttatctgaaagaagtttagaagaatttgaaagcgc
ctaagctcttcctagtcttggtaaaggcaaggttcaagctcttctccctg
gctgttgaataaagtatagttcctggcacagctttgtaagtagggagttt
actcacaaacaccacacagatatccacatcacaataccaaagaaactaca
tgcttgcagttccacactggtaaaatttaacttaataaaagtttaattta
cccctaaatctaccaaaaacttttggttacttttcccgactttgatgtcc
ttcaatgaagagcatttttgaatataagtattttcagatcaatttttatc
agttggtttccatcactagattaaattaatttcttagacatgcctgtttt
tttttctgattctttttttttattagatattttctttatttacatttcaa
atgctatcccgaaatttccctataccctccccctgccctgctcccctacc
cacccactcccacttcttggccctggtgttcccctatactgggggatata
aagtttgcaagaccaaggggcctctctccccagtgatggctgagtaggcc
atcttctgctacatatgcagctagagacacgagttctgggggtactgggt
tagttcatattgttgttgacctagagggttgcagaccccctttcagctcc
ttggtgctttctctagcttctcattgggggccctgtgttcctattctatg
gatgactgtgagcatcactctgtatttgccagcacagccatagcctcata
tgagacagctatgtcagtctctccagccaaatctgctgcatatgca

catttcagaaagagaatatttgattttccttgttaaaataaatgttagga
aaatacagaataagcagagaaattgcatatataatgctttaagcaagctt
ttataactccctggaattagcaaaattctattatgtgaatcaagttttgt
gtatatgacatttcagattttttaaaagagaagtcaagccaagaccagta
atcatttccaaaatcaagtcctccaaaatgctgtgccatctacagaggaa
tatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtatgtgtgtgtctgtgagtgtgtgtatatgtgtgtttttgtctttgtg
tgtatgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22794825_22795925
seq2: B6Ng01-270I06.b_40_1135

seq1  GAATTCAGTTAATAAGATTTCTTGCATTATTCTAGTGTTTTAAGACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAATAAGATTTCTTGCATTATTCTAGTGTTTTAAGACAGAC  50

seq1  CTATGTTGAGAAGACCTGGGTTTGCTCTGACAACAACAGTATTGCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGAGAAGACCTGGGTTTGCTCTGACAACAACAGTATTGCTTGTG  100

seq1  CTCGCTCCTAACAGTGTACCATCCTGGTACTCTGAGTGTCTCTCTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTCCTAACAGTGTACCATCCTGGTACTCTGAGTGTCTCTCTCTCTT  150

seq1  TTCTTGCTATCATGGAGACATAACTGACATCTTTGGTAGCATGCCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTATCATGGAGACATAACTGACATCTTTGGTAGCATGCCAATTT  200

seq1  TCACAATTCTAAAGACATTCCAAGACAAGTTGATCATTGGTATCTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTCTAAAGACATTCCAAGACAAGTTGATCATTGGTATCTCCTGA  250

seq1  AGGCCTATGGCTGCCTTATCTGAAAGAAGTTTAGAAGAATTTGAAAGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATGGCTGCCTTATCTGAAAGAAGTTTAGAAGAATTTGAAAGCGC  300

seq1  CTAAGCTCTTCCTAGTCTTGGTAAAGGCAAGGTTCAAGCTCTTCTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCTTCCTAGTCTTGGTAAAGGCAAGGTTCAAGCTCTTCTCCCTG  350

seq1  GCTGTTGAATAAAGTATAGTTCCTGGCACAGCTTTGTAAGTAGGGAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAATAAAGTATAGTTCCTGGCACAGCTTTGTAAGTAGGGAGTTT  400

seq1  ACTCACAAACACCACACAGATATCCACATCACAATACCAAAGAAACTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAACACCACACAGATATCCACATCACAATACCAAAGAAACTACA  450

seq1  TGCTTGCAGTTCCACACTGGTAAAATTTAACTTAATAAAAGTTTAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAGTTCCACACTGGTAAAATTTAACTTAATAAAAGTTTAATTTA  500

seq1  CCCCTAAATCTACCAAAAACTTTTGGTTACTTTTCCCGACTTTGATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAATCTACCAAAAACTTTTGGTTACTTTTCCCGACTTTGATGTCC  550

seq1  TTCAATGAAGAGCATTTTTGAATATAAGTATTTTCAGATCAATTTTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAAGAGCATTTTTGAATATAAGTATTTTCAGATCAATTTTTATC  600

seq1  AGTTGGTTTCCATCACTAGATTAAATTAATTTCTTAGACATGCCTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTTCCATCACTAGATTAAATTAATTTCTTAGACATGCCTGTTTT  650

seq1  TTTTTCTGATTCTTTTTTTTTATTAGATATTTTCTTTATTTACATTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGATTCTTTTTTTTTATTAGATATTTTCTTTATTTACATTTCAA  700

seq1  ATGCTATCCCGAAATTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCGAAATTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTACC  750

seq1  CACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTATACTGGGGGATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTATACTGGGGGATATA  800

seq1  AAGTTTGCAAGACCAAGGGGCCTCTCTCCCCAGTGATGGCTGAGTAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAAGACCAAGGGGCCTCTCTCCCCAGTGATGGCTGAGTAGGCC  850

seq1  ATCTTCTGCTACATATGCAGCTAGAGACACGAGTTCTGGGGGTACT-GGT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCTTCTGCTACATATGCAGCTAGAGACACGAGTTCTGGGGGTACTGGGT  900

seq1  TAGTTCATATTGTTGTTGACCTAGAGGGTTGCAGACCCC--TTCAGCTCC  947
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TAGTTCATATTGTTGTTGACCTAGAGGGTTGCAGACCCCCTTTCAGCTCC  950

seq1  TTGGGTGCTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTT-CTATTCTA  996
      || ||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TT-GGTGCTTTCTCTAGCTTCT-CATTGGGGGCCCTGTGTTCCTATTCTA  998

seq1  TGGGTGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACAGGCATAGCC  1046
      ||| ||||||||||||| ||| ||||||||||||| |||||| |||||||
seq2  TGGATGACTGTGAGCAT-CAC-TCTGTATTTGCCA-GCACAGCCATAGCC  1045

seq1  TCATATGAGACAGCTATGTCAGGGTCTCTTCAGCAAAATCTTGCTGGCAT  1096
      |||||||||||||||||||||  |||||| |||| ||||| |||| ||||
seq2  TCATATGAGACAGCTATGTCA--GTCTCTCCAGCCAAATC-TGCT-GCAT  1091

seq1  ATGCA  1101
      |||||
seq2  ATGCA  1096


seq1: chr15_22873189_22873594
seq2: B6Ng01-270I06.g_61_426 (reverse)

seq1  CTCACACACACATACACACACAGACACACACACACTCACACACACATACA  50
                                              | ||||||||
seq2  ----------------------------------------CTCACATACA  10

seq1  CACAGAGACACACACACACAGAGACACACACACACAGAGACACACAGACA  100
      |||| ||||| | ||||||| | |||||||| |||||| ||||||| |||
seq2  CACAAAGACAAAAACACACATATACACACACTCACAGACACACACATACA  60

seq1  CACACATACACACACACACACACACACACACACACACACACACACACATA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACATA  110

seq1  TTCCTCTGTAGATGGCACAGCATTTTGGAGGACTTGATTTTGGAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTAGATGGCACAGCATTTTGGAGGACTTGATTTTGGAAATGAT  160

seq1  TACTGGTCTTGGCTTGACTTCTCTTTTAAAAAATCTGAAATGTCATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCTTGGCTTGACTTCTCTTTTAAAAAATCTGAAATGTCATATAC  210

seq1  ACAAAACTTGATTCACATAATAGAATTTTGCTAATTCCAGGGAGTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTTGATTCACATAATAGAATTTTGCTAATTCCAGGGAGTTATAA  260

seq1  AAGCTTGCTTAAAGCATTATATATGCAATTTCTCTGCTTATTCTGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCTTAAAGCATTATATATGCAATTTCTCTGCTTATTCTGTATTT  310

seq1  TCCTAACATTTATTTTAACAAGGAAAATCAAATATTCTCTTTCTGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACATTTATTTTAACAAGGAAAATCAAATATTCTCTTTCTGAAATG  360

seq1  GAATTC  406
      ||||||
seq2  GAATTC  366


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