BAC Information

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BAC

Clone NameB6Ng01-271B13
Chromosome15 (Build37)
Map Location 102,859,878 - 102,998,592
singlet/doubletdoublet
Overlap geneHoxc4, LOC432989, Smug1
Upstream geneKrt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5
Downstream geneCbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B13.bB6Ng01-271B13.g
ACCGA073269GA073270
length982217
definitionB6Ng01-271B13.b B6Ng01-271B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,859,878 - 102,860,855)(102,998,376 - 102,998,592)
sequence
gaattccaaggaaggcaaggcgggggagatctgcaagaggactctgccta
tggtctccaaacaaacaagagaaattcatctttaatattttaaagggggc
aaattaacattctgtgatttcttttattctttcttctcttctctctctct
ctctctctctctctctctcttgagactatcagcagttccaagaggatgaa
aacggttgagtattttctagtgacacatccaggttattaaagtcatttta
gaccaattcattacttttactgacaagagatttaagaaaaaaatcaatta
agcatttgcatattcttttgcatacattagtcctgcctgctggcattagg
aaaggacaaaaacatacatatacccatgtacacacagagagatacacaaa
ggaaaaaaatggtataagaatcttgttttagtttgggattttcaagttgc
ccgggggagaaaaaaatcaaaatgaaatgaattgcctgattgcataccat
ctaaaagtcaatttatttgaggaaaaggaaagaagcatgctgtaatttgt
aatccctaaaacaacacaaagaacatacatttaaaaacaacaacacacca
agccctgtgcttcagagagtaggtgtgacctttattttccttctttttac
cgtctaaatcctgaattattttatattttattttatttttttgtccctca
gaaaatccagggagcataaggtggggttttactgcagtacagaatctgtg
gagccgctggggtacctcagccggcatcttgttactggggaggggaggaa
tatgggttagccaacggtcagtatggtaatccagacacaataaggccctc
tcacaacaatggacacatatttttcttcagtggttgtcagaagggaagcg
ctttgtactgaaacatgtttccgaagagaacccagatcgagatttagaaa
gggagattggggtgttggggcagcacgcagag
caggccagagacaatagtggtgtggcagtggagatgagaaaggccaaatc
tggatggggagggctgagagggaggtgaatccagctagaagcacttctgt
ggtgccgggtgtgggaggagactcagtagagatcagcggctcttgctgtc
atgcttaaccctgttctgtaagctgtggagtggattatagaggtgaggag
aggattatttgtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102859878_102860855
seq2: B6Ng01-271B13.b_44_1025

seq1  GAATTCCAAGGAAGGCAAGGCGGGGGAGATCTGCAAGAGGACTCTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAAGGCAAGGCGGGGGAGATCTGCAAGAGGACTCTGCCTA  50

seq1  TGGTCTCCAAACAAACAAGAGAAATTCATCTTTAATATTTTAAAGGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCAAACAAACAAGAGAAATTCATCTTTAATATTTTAAAGGGGGC  100

seq1  AAATTAACATTCTGTGATTTCTTTTATTCTTTCTTCTCTTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATTCTGTGATTTCTTTTATTCTTTCTTCTCTTCTCTCTCTCT  150

seq1  CTCTCTCTCTCTCTCTCTCTTGAGACTATCAGCAGTTCCAAGAGGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTTGAGACTATCAGCAGTTCCAAGAGGATGAA  200

seq1  AACGGTTGAGTATTTTCTAGTGACACATCCAGGTTATTAAAGTCATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTTGAGTATTTTCTAGTGACACATCCAGGTTATTAAAGTCATTTTA  250

seq1  GACCAATTCATTACTTTTACTGACAAGAGATTTAAGAAAAAAATCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATTCATTACTTTTACTGACAAGAGATTTAAGAAAAAAATCAATTA  300

seq1  AGCATTTGCATATTCTTTTGCATACATTAGTCCTGCCTGCTGGCATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGCATATTCTTTTGCATACATTAGTCCTGCCTGCTGGCATTAGG  350

seq1  AAAGGACAAAAACATACATATACCCATGTACACACAGAGAGATACACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAAAACATACATATACCCATGTACACACAGAGAGATACACAAA  400

seq1  GGAAAAAAATGGTATAAGAATCTTGTTTTAGTTTGGGATTTTCAAGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAATGGTATAAGAATCTTGTTTTAGTTTGGGATTTTCAAGTTGC  450

seq1  CCGGGGGAGAAAAAAATCAAAATGAAATGAATTGCCTGATTGCATACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGAGAAAAAAATCAAAATGAAATGAATTGCCTGATTGCATACCAT  500

seq1  CTAAAAGTCAATTTATTTGAGGAAAAGGAAAGAAGCATGCTGTAATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTCAATTTATTTGAGGAAAAGGAAAGAAGCATGCTGTAATTTGT  550

seq1  AATCCCTAAAACAACACAAAGAACATACATTTAAAAACAACAACACACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTAAAACAACACAAAGAACATACATTTAAAAACAACAACACACCA  600

seq1  AGCCCTGTGCTTCAGAGAGTAGGTGTGACCTTTATTTTCCTTCTTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGCTTCAGAGAGTAGGTGTGACCTTTATTTTCCTTCTTTTTAC  650

seq1  CGTCTAAATCCTGAATTATTTTATATTTTATTTTATTTTTTTGTCCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAAATCCTGAATTATTTTATATTTTATTTTATTTTTTTGTCCCTCA  700

seq1  GAAAATCCAGGGAGCATAAGGTGGGGTTTTACTGCAGTACAGAATCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCAGGGAGCATAAGGTGGGGTTTTACTGCAGTACAGAATCTGTG  750

seq1  GAGCCGCTGGGGTACCTCAGCCGGCATCTTGTTACTGGGGAGGGGAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCTGGGGTACCTCAGCCGGCATCTTGTTACTGGGGAGGGGAGGAA  800

seq1  TATGGGTTAGCCAACGGTCAGTATGGTAATCCAGACACAATAAGG-CCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATGGGTTAGCCAACGGTCAGTATGGTAATCCAGACACAATAAGGCCCTC  850

seq1  TCACAACAATGGACACATATTTTTCTTCAGTGG-TGTCAGAAGGGAAGCG  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCACAACAATGGACACATATTTTTCTTCAGTGGTTGTCAGAAGGGAAGCG  900

seq1  CTTTGTACTGAAACATGTTTCCGAAAGAGAAACCAGATCGAGATTTAGAA  948
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CTTTGTACTGAAACATGTTTCCG-AAGAGAACCCAGATCGAGATTTAGAA  949

seq1  A-GGAGA-TGGGGTG-TGGGGCAGCACGCAGAG  978
      | ||||| ||||||| |||||||||||||||||
seq2  AGGGAGATTGGGGTGTTGGGGCAGCACGCAGAG  982

seq1: chr15_102998376_102998592
seq2: B6Ng01-271B13.g_72_288 (reverse)

seq1  AACACACAAATAATCCTCTCCTCACCTCTATAATCCACTCCACAGCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAATAATCCTCTCCTCACCTCTATAATCCACTCCACAGCTTAC  50

seq1  AGAACAGGGTTAAGCATGACAGCAAGAGCCGCTGATCTCTACTGAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGGTTAAGCATGACAGCAAGAGCCGCTGATCTCTACTGAGTCTC  100

seq1  CTCCCACACCCGGCACCACAGAAGTGCTTCTAGCTGGATTCACCTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACACCCGGCACCACAGAAGTGCTTCTAGCTGGATTCACCTCCCTC  150

seq1  TCAGCCCTCCCCATCCAGATTTGGCCTTTCTCATCTCCACTGCCACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTCCCCATCCAGATTTGGCCTTTCTCATCTCCACTGCCACACCA  200

seq1  CTATTGTCTCTGGCCTG  217
      |||||||||||||||||
seq2  CTATTGTCTCTGGCCTG  217