BAC Information

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BAC

Clone NameB6Ng01-272F08
Chromosome15 (Build37)
Map Location 46,818,169 - 46,819,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272F08.bB6Ng01-272F08.g
ACCGA074187GA074188
length1,2041,118
definitionB6Ng01-272F08.b B6Ng01-272F08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatatgagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtaataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattgggtgctg
gcacaactgggttgttatcgtgtagaagaatgcgaatcgatccatactta
tctctgtactaaggtcaaatctaagtggatcaggacttcacataaaacag
agacactgaaacttatagaggagaaagtgggggaaagctgagaatatggg
gcacaggagaaaactcatggaacggaacagcaattgctgtgcgtagatcc
ggaatcgacaagtgaactaatgaacttccaaggtttcttgcaagggctaa
tgac
gaattctttactggtgggaaattggagctgacaatattagatattatact
tgtaacatctatatgatttctcaaaagctttaaattttattctttctgga
attaaagctggttttcaactatcacttagacagtaatcctatgaaaatag
caacttttgttgttctttggaattgtcagtatcattcatgcaatcttctt
ttctggccactctttgaacatttcttatgaagaaagagggccaaagattc
cttgaaatgatactgaatacattattaaagatatgtgaaaacagtatgtc
tttaaaattggacagttgaaagttcaggttctgaattttcagacctagtt
acaattcagagagaatgatgacagaactatctcatgtatttaaagtcagg
gatgatggaataagtttgggtctaaggagaagtccaattttagaaaggag
taccatatgacatcattttgtcatatatctataaataatattggcagtaa
ccctaatttctgctttttttagttattaatcttattttgctgtcttgcat
ttatttttcctaatttaatcacatcagtcagtagtaaaattataggggtt
tgtttatgtactcagaacaaacttttcaaatattgccaaatttagtggct
gcgtactaactgtccttaaattatgaagcactctccacctactattttca
aatgatttatattcttttctatagttcattttaggaaaaattaaactatt
acaaacatgtgctttcctataactaatttttaaaggttgaacacataaac
ctcttcaaacaattccatgtgcattctttacatgcttatgctattttgat
cacagaagttgcacctatgttcacaagacatgcactacatttataattta
aatttcatcatgactggaaagggactttggaagcccccacatttttgtga
gttcctgagcaagtgagactcatcccttccagagtaggacaaatccttta
ctcagttatgaaaatactagtatttacctagtacttactttatttattta
ttttactgaaccaatgtagtttatactcataaccacatgttcatgctagt
ttctcttttaacatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_46818169_46819289
seq2: B6Ng01-272F08.g_66_1183 (reverse)

seq1  AAATATGTTTAAAGAGGAAACTAGCATGAACATGTG--TATGAGGTTATT  48
      ||||||||| ||||| ||||||||||||||||||||  ||||||  || |
seq2  AAATATGTTAAAAGA-GAAACTAGCATGAACATGTGGTTATGAG--TA-T  46

seq1  AAACTACATTGGTTTCAGTAAAATAAATAAATAAAGTAAGTACTAGGTAA  98
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACTACATTGG-TTCAGTAAAATAAATAAATAAAGTAAGTACTAGGTAA  95

seq1  ATACCTAGTATTTTCATAACTGAAGTAAAGGATTTGTCCTACTCTGGAA-  147
      ||| |||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ATA-CTAGTATTTTCATAACTG-AGTAAAGGATTTGTCCTACTCTGGAAG  143

seq1  GGATGAGTCTCACTTGCTCAGGAACTCACAAAAATGTGGGGGCTTCCAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGTCTCACTTGCTCAGGAACTCACAAAAATGTGGGGGCTTCCAAA  193

seq1  GTCCC-TTCCAGTCATGATGAAATTTAAATTATAAATGTAGTGCATGTCT  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTCCAGTCATGATGAAATTTAAATTATAAATGTAGTGCATGTCT  243

seq1  TGTGAACATAGGTGCAACTTCTGTGATCAAAATAGCATAAGCATGTAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATAGGTGCAACTTCTGTGATCAAAATAGCATAAGCATGTAAAG  293

seq1  AATGCACATGGAATTGTTTGAAGAGGTTTATGTGTTCAACCTTTAAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACATGGAATTGTTTGAAGAGGTTTATGTGTTCAACCTTTAAAAAT  343

seq1  TAGTTATAGGAAAGCACATGTTTGTAATAGTTTAATTTTTCCTAAAATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGGAAAGCACATGTTTGTAATAGTTTAATTTTTCCTAAAATGA  393

seq1  ACTATAGAAAAGAATATAAATCATTTGAAAATAGTAGGTGGAGAGTGCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGAAAAGAATATAAATCATTTGAAAATAGTAGGTGGAGAGTGCTT  443

seq1  CATAATTTAAGGACAGTTAGTACGCAGCCACTAAATTTGGCAATATTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAAGGACAGTTAGTACGCAGCCACTAAATTTGGCAATATTTGA  493

seq1  AAAGTTTGTTCTGAGTACATAAACAAACCCCTATAATTTTACTACTGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGTTCTGAGTACATAAACAAACCCCTATAATTTTACTACTGACT  543

seq1  GATGTGATTAAATTAGGAAAAATAAATGCAAGACAGCAAAATAAGATTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATTAAATTAGGAAAAATAAATGCAAGACAGCAAAATAAGATTAA  593

seq1  TAACTAAAAAAAGCAGAAATTAGGGTTACTGCCAATATTATTTATAGATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAAAAAGCAGAAATTAGGGTTACTGCCAATATTATTTATAGATA  643

seq1  TATGACAAAATGATGTCATATGGTACTCCTTTCTAAAATTGGACTTCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAAATGATGTCATATGGTACTCCTTTCTAAAATTGGACTTCTCC  693

seq1  TTAGACCCAAACTTATTCCATCATCCCTGACTTTAAATACATGAGATAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCCAAACTTATTCCATCATCCCTGACTTTAAATACATGAGATAGT  743

seq1  TCTGTCATCATTCTCTCTGAATTGTAACTAGGTCTGAAAATTCAGAACCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATCATTCTCTCTGAATTGTAACTAGGTCTGAAAATTCAGAACCT  793

seq1  GAACTTTCAACTGTCCAATTTTAAAGACATACTGTTTTCACATATCTTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCAACTGTCCAATTTTAAAGACATACTGTTTTCACATATCTTTA  843

seq1  ATAATGTATTCAGTATCATTTCAAGGAATCTTTGGCCCTCTTTCTTCATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATTCAGTATCATTTCAAGGAATCTTTGGCCCTCTTTCTTCATA  893

seq1  AGAAATGTTCAAAGAGTGGCCAGAAAAGAAGATTGCATGAATGATACTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTCAAAGAGTGGCCAGAAAAGAAGATTGCATGAATGATACTGA  943

seq1  CAATTCCAAAGAACAACAAAAGTTGCTATTTTCATAGGATTACTGTCTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAAAGAACAACAAAAGTTGCTATTTTCATAGGATTACTGTCTAA  993

seq1  GTGATAGTTGAAAACCAGCTTTAATTCCAGAAAGAATAAAATTTAAAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGTTGAAAACCAGCTTTAATTCCAGAAAGAATAAAATTTAAAGCT  1043

seq1  TTTGAGAAATCATATAGATGTTACAAGTATAATATCTAATATTGTCAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAATCATATAGATGTTACAAGTATAATATCTAATATTGTCAGCT  1093

seq1  CCAATTTCCCACCAGTAAAGAATTC  1121
      |||||||||||||||||||||||||
seq2  CCAATTTCCCACCAGTAAAGAATTC  1118