BAC Information

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BAC

Clone NameB6Ng01-272J06
Chromosome15 (Build37)
Map Location 94,467,139 - 94,582,081
singlet/doubletdoublet
Overlap geneTmem117
Upstream geneZfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
Downstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272J06.bB6Ng01-272J06.g
ACCGA074370GA074371
length1,0241,110
definitionB6Ng01-272J06.b B6Ng01-272J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,467,139 - 94,468,174)(94,581,171 - 94,582,081)
sequence
gaattccaggtctgctagggcaacatacatggagaaaccttgtcccaaga
aacaagatggggaagaagaggaagatgaggaggacagctgtcatctccac
ctggggaaacatcctacttagccttggccatgtctttctctgtgaaagcg
tcctttttttttttttttttttttgtttttgttttttgttttgtcactcc
cagaagcacaatggtccagctctgcccacccacttccacccctgggggaa
atgcttagtatagacttggctatattaaatatttcctgaaattcaaccag
actctaaaggtttttttttttttttttttttgaaatttctgcccatatgc
ccatttaatgatgtctagaaatagatttggaagcatatcccatatccatc
aaattacttactcaccgctgtgcaaaaacagatttgggctgtgtttgtta
atatgtattttacttttgcatcacttgatcttttaagtggcttcgtagta
ttgtcataagataaactgtctaaaagcatcacaaagatgttgtgcttccc
ccctccatgtcatcgtcaccatagtcatgatctcattaaaacaaaacaaa
acaaaacacaatggtctcatgtagcccagactggcgtcaaacttggttag
ttcaagctgggcttgaacttgtaaaattccatcttttacctcccaagtgt
tgggattacaggtgtgtgccatcaagcctggctatcaccttagctttgtt
cttccctctcttgtcccctcccccaccaaagatttatttattatatctaa
gtacactatagctgtcttcagagacaccccagaagagggcattcagatct
cattacaggatggctgtgagctactatatagttgctgggatttgaattca
gacctttgggaagagcattcagtgctaatacactgagcatctctccaagc
ctctctctctgactctcactagtcctcaaatgatagagattaaaattaac
tggtcggtggtggcacagtcttta
gaattcagcaggagggaaatcatgcctagtaagggaaagctagctaattg
cgcatggctggtaaggccagagatcttagaaaataactactaacatttta
ctaaatcagcttagctcttgattgcattctaaatgtttgttcttatgtgc
acagataagtgtagctctcgccactcccataaacatactcaataaataga
tagatgatagatagatagacagacagatagatgatagatgcatagataga
tagatagatagatagatagatagatagatagatagatagatgatagatac
atagatgcatagatacatagatagatatatagatatatggagagatgtaa
tggtaacaattaaggaaacagaaccatgaatgtaagagaaaacaagtcat
aagaactagaggatctactgtgagactgtatctcctagacctgacaggga
aactttgctgatggcacctcaaccatatgggtacagtagcaagacatgaa
caacactagcaaaaattctaaaatggaaaggggaaatttcacactgcccc
agccctgagagaataaaaattaaaagccactacagtttgcatgctcataa
ttccttaaatggggcataattatcagtaaatatcatcatagtaacccgat
gccttgccctttgtgtctttgaaatagtccatgttcaaaaaaaaaaaaaa
aaaaaaaaacttatgatgcctaacaatactacttcaggcattagcagaat
tctgctgcttatcttgctttaaagcgccattagggtaactttcagtcctc
actttccttggcgagcacaaatgatggtagcttttaaaaagaacccaacc
cacctacagaacatcctgagacattcaatcagctgcgtgaatttcttcac
ggcagagatttgtgtcaatttatgaacattttttctccaattgtttctat
caatgggttgccattttatcatttgtgttttatcatgtggggtaggtatc
aaaaaaaaaagtctcaaggcaggctgcaactacgtccagtcaagagcatc
actgaaaatgcgcctattgcctgatattctttagaggtcctttctcctcc
acacataatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_94467139_94468174
seq2: B6Ng01-272J06.b_47_1070

seq1  GAATTCCAGGTCTGCTAGGGCAACATACATGGAGAAACCTTGTCCCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCTGCTAGGGCAACATACATGGAGAAACCTTGTCCCAAGA  50

seq1  AACAAGATGGGGAAGAAGAGGAAGATGAGGAGGACAGCTGTCATCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATGGGGAAGAAGAGGAAGATGAGGAGGACAGCTGTCATCTCCAC  100

seq1  CTGGGGAAACATCCTACTTAGCCTTGGCCATGTCTTTCTCTGTGAAAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAACATCCTACTTAGCCTTGGCCATGTCTTTCTCTGTGAAAGCG  150

seq1  TCCTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTGTTTTGTCACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTGTTTTGTCACTCC  200

seq1  CAGAAGCACAATGGTCCAGCTCTGCCCACCCACTTCCACCCCTGGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCACAATGGTCCAGCTCTGCCCACCCACTTCCACCCCTGGGGGAA  250

seq1  ATGCTTAGTATAGACTTGGCTATATTAAATATTTCCTGAAATTCAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGTATAGACTTGGCTATATTAAATATTTCCTGAAATTCAACCAG  300

seq1  ACTCTAAAGGTTTTTTTTTTTTTTTTTTTTTGAAATTTCTGCCCATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAGGTTTTTTTTTTTTTTTTTTTTTGAAATTTCTGCCCATATGC  350

seq1  CCATTTAATGATGTCTAGAAATAGATTTGGAAGCATATCCCATATCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAATGATGTCTAGAAATAGATTTGGAAGCATATCCCATATCCATC  400

seq1  AAATTACTTACTCACCGCTGTGCAGAGACAGATTTGGGCTGTGTTTGTTA  450
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  AAATTACTTACTCACCGCTGTGCAAAAACAGATTTGGGCTGTGTTTGTTA  450

seq1  ATATGTATTTTACTTTTGCATCACTTGATCTTTTAAGTGGCTTCGTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTTTACTTTTGCATCACTTGATCTTTTAAGTGGCTTCGTAGTA  500

seq1  TTGTCATAAGATAAACTGTCTAAAAGCATCACAAAGATGTTGTGCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAAGATAAACTGTCTAAAAGCATCACAAAGATGTTGTGCTTCCC  550

seq1  CCCTCCATGTCATCGTCACCATAGTCATGATCTCATTAAAACAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATGTCATCGTCACCATAGTCATGATCTCATTAAAACAAAACAAA  600

seq1  ACAAAACACAATGGTCTCATGTAGCCCAGACTGGCGTCAAACTTGGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACAATGGTCTCATGTAGCCCAGACTGGCGTCAAACTTGGTTAG  650

seq1  TTCAAGCTGGGCTTGAACTTGTAAAATTCCATCTTTTACCTCCCAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTGGGCTTGAACTTGTAAAATTCCATCTTTTACCTCCCAAGTGT  700

seq1  TGGGATTACAGGTGTGTGCCATCAAGCCTGGCTATCACCTTAGCTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTACAGGTGTGTGCCATCAAGCCTGGCTATCACCTTAGCTTTGTT  750

seq1  CTTCCCTCTCTTGTCCCCTCCCCCACCAAAGATTTATTTATTATATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTCTTGTCCCCTCCCCCACCAAAGATTTATTTATTATATCTAA  800

seq1  GTACACTATAGCTGTCTTCAGAGACACCCCAGAAGAGGGCATTCAGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTATAGCTGTCTTCAGAGACACCCCAGAAGAGGGCATTCAGATCT  850

seq1  CATTACA-GATGGCTGTGAGCTACTATATAGTTGCTGGGATTTGAATTCA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGGATGGCTGTGAGCTACTATATAGTTGCTGGGATTTGAATTCA  900

seq1  GGACCTTT-GGAAGAGCATTCAGTGCTAATAACCACTGAGCCATCTCTCC  948
       ||||||| ||||||||||||||||||||||  ||||||| |||||||||
seq2  -GACCTTTGGGAAGAGCATTCAGTGCTAATA--CACTGAG-CATCTCTCC  946

seq1  AGGCCCTCTCTTCTCTTTTATCTTCTCACTAGTCCTCAAATGATAGGAGA  998
      | | |||||| |||||       |||||||||||||||||||||| ||||
seq2  AAG-CCTCTC-TCTCT----GACTCTCACTAGTCCTCAAATGATA-GAGA  989

seq1  TTAAAAATAAACCTGGTCGGTGGTGGCACAGGTCTTTA  1036
      |||||| |||  |||||||||||||||||| |||||||
seq2  TTAAAATTAA--CTGGTCGGTGGTGGCACA-GTCTTTA  1024

seq1: chr15_94581171_94582081
seq2: B6Ng01-272J06.g_282_1176 (reverse)

seq1  CATTATGTGTTGGAGGAGAAAGAGACTTCTAAAAGATATCAGGGAAAATA  50
      ||||||||| |||||||||||| ||| ||||||  ||||||||   ||||
seq2  CATTATGTG-TGGAGGAGAAAG-GACCTCTAAAGAATATCAGG--CAATA  46

seq1  GGCGCATTTTCAGTGATGGCTTCTTTGGACT-GAAGTAGGTGGCAGGCTG  99
      ||||||||||||||||||    || | |||| || ||| || |||| |||
seq2  GGCGCATTTTCAGTGATG----CTCTTGACTGGACGTA-GTTGCAGCCTG  91

seq1  GCCTTTGAGACTTTTTTTTTTTGATACCTACCCAACATGAATAAAAACCA  149
        | ||||||| ||||||||||||||||||||| ||||| ||||||  ||
seq2  --CCTTGAGAC-TTTTTTTTTTGATACCTACCCCACATG-ATAAAA--CA  135

seq1  CAAATGAATAAAATGGCAACCATTTGATAGAAAACAATGGGAG-AAAAAT  198
      |||||| ||||||||||||||  ||||||| ||||||| |||| ||||||
seq2  CAAATG-ATAAAATGGCAACCCATTGATAG-AAACAATTGGAGAAAAAAT  183

seq1  GTTCATAAATTGACACAAATCTCTGCCGTGAAG-AATTCACGCAGCTGAT  247
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTCATAAATTGACACAAATCTCTGCCGTGAAGAAATTCACGCAGCTGAT  233

seq1  TGAATGTCTCAGGATGTTCTGTAGGTGGGTTGGGTTCTTTTT-AAAGCTA  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAATGTCTCAGGATGTTCTGTAGGTGGGTTGGGTTCTTTTTAAAAGCTA  283

seq1  CCATCATTTGTGCTCGCCAAGGAAAGTGAGGACTGAAAGTTACCCTAATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTGTGCTCGCCAAGGAAAGTGAGGACTGAAAGTTACCCTAATG  333

seq1  GCGCTTTAAAGCAAGATAAGCAGCAGAATTCTGCTAATGCCTGAAGTAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTTAAAGCAAGATAAGCAGCAGAATTCTGCTAATGCCTGAAGTAGT  383

seq1  ATTGTTAGGCATCATAAGTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAT  446
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  ATTGTTAGGCATCATAAG---TTTTTTTTTTTTTTTTTTTTTTTGAACAT  430

seq1  GGACTATTTCAAAGACACAAAGGGCAAGGCATCGGGTTACTATGATGATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATTTCAAAGACACAAAGGGCAAGGCATCGGGTTACTATGATGATA  480

seq1  TTTACTGATAATTATGCCCCATTTAAGGAATTATGAGCATGCAAACTGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGATAATTATGCCCCATTTAAGGAATTATGAGCATGCAAACTGTA  530

seq1  GTGGCTTTTAATTTTTATTCTCTCAGGGCTGGGGCAGTGTGAAATTTCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTTAATTTTTATTCTCTCAGGGCTGGGGCAGTGTGAAATTTCCC  580

seq1  CTTTCCATTTTAGAATTTTTGCTAGTGTTGTTCATGTCTTGCTACTGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTTTAGAATTTTTGCTAGTGTTGTTCATGTCTTGCTACTGTAC  630

seq1  CCATATGGTTGAGGTGCCATCAGCAAAGTTTCCCTGTCAGGTCTAGGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGTTGAGGTGCCATCAGCAAAGTTTCCCTGTCAGGTCTAGGAGA  680

seq1  TACAGTCTCACAGTAGATCCTCTAGTTCTTATGACTTGTTTTCTCTTACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTCACAGTAGATCCTCTAGTTCTTATGACTTGTTTTCTCTTACA  730

seq1  TTCATGGTTCTGTTTCCTTAATTGTTACCATTACATCTCTCCATATATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTTCTGTTTCCTTAATTGTTACCATTACATCTCTCCATATATCT  780

seq1  ATATATCTATCTATGTATCTATGCATCTATGTATCTATCATCTATCTATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTATCTATGTATCTATGCATCTATGTATCTATCATCTATCTATC  830

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATGCATCTATCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATGCATCTATCAT  880

seq1  CTATCTGTCTGTCTA  911
      |||||||||||||||
seq2  CTATCTGTCTGTCTA  895