BAC Information

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BAC

Clone NameB6Ng01-273C11
Chromosome15 (Build37)
Map Location 102,820,963 - 102,982,853
singlet/doubletdoublet
Overlap geneHoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060
Downstream geneSmug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273C11.bB6Ng01-273C11.g
ACCGA074797GA074798
length762916
definitionB6Ng01-273C11.b B6Ng01-273C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,982,094 - 102,982,853)(102,820,963 - 102,821,875)
sequence
gaattcaatagtggagtgagggtaggtgtgggaatcgaggggattagcat
gtagtgagaatatgcaggaaggctggtagagaccatggtgcccaaggcac
ctatgctctgactgtagtggatttttaccctcaattcctccaatgtgact
tgtcagagactggttagagttccatgcctgctagggttgccataacaaaa
atacccagtctgatggcttgaacaatggactttattttctcataattctg
gccactggaggtacaagatgacaatgttagctgctcaggccctactgagg
ccttctttcatcacagcagctggcttccgtatctttacatactttttttt
tctttttcttttttttgccatgtgtggctctgtagtgtctcccttctttc
ctagaaggataccaatcattggattattgctttaccctgcggatttcatt
taacctttctttaatgcttcttcacttatttaaaggatctatctccaaaa
tattagggctttagcatatgaattttgtggggcataattcagttcatagc
agcaaagtcattttatctgtcaccagggttaacttcgtatgagatagtgc
actcaggagagaagtgtccctgtgcctccctgtgcccgccctccccaacc
cccccaacaaccctccctacctcaccctgttcccacccccactccaagct
ttggaatctggtctgggcccttacctacctgtccagacttagtgccatca
gatttgctttta
cctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctacc
gacagtgagcagagagctgcagccgcccgagcccgcagccggcaccgcgc
ccccacctgcccagcccccagcccagcagtccagcccgggggagccggcc
agcttggggttcggtcccggggggaggggagtttcggggatacccggcgg
gggagcgtgatccaaggggagggggccgcgggttttcatgtacccagcat
gagctcctacttcgtcaaccccctgttttccaaatacaaaggcggcgagt
ccctggaaccggcctattacgactgccggttccctcagagcgtgggcaga
agccatgcgctggtgtacgggcccggcggctccgcgcccggtttccagca
cgcctcgcaccacgtccaagacttcttccaccacggcacctccggcatct
ccaactcgggctaccagcagaacccatgctcgctgagctgccacggagac
gcctccaaattctatggctacgaggcgctccccagacagtccctttatgg
ggctcagcaagaggcgagcgtggtgcaatatcccgactgtaaatcctccg
ccaacactaacagtagcgaaggacaaggccacttaaatcagaactcgtct
cccagcctcatgtttccatggatgagaccccacggtgagaagccttttct
ctttcccccttggtctcccgcgctccggggtcttcccccctccctcgcct
cctttttgtctgccctagctcgctttccttcctggctttgggggtctctc
ccactccactcccgtgcctgggtgggttcctgggagattgaaaggcttgg
ctgggggtggagcgtggggtgcctgagatattgtgctttgttgggggtga
aggttggggcaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102982094_102982853
seq2: B6Ng01-273C11.b_43_804 (reverse)

seq1  TAAAAGC-AATCTGATGGCACTAAGTCTGGACAGGTAGGTAAGGGCCCAG  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAAATCTGATGGCACTAAGTCTGGACAGGTAGGTAAGGGCCCAG  50

seq1  ACCAGATTCC-AAGCTTGGAGTGGGGGTGGGGACAGGGTGAGCTAGGGAG  98
      |||||||||| |||||||||||||||||||| |||||||||| |||||||
seq2  ACCAGATTCCAAAGCTTGGAGTGGGGGTGGGAACAGGGTGAGGTAGGGAG  100

seq1  GGTTGTTGGGGGGGTTGGGGAGGGCGGGCACAGGGAGGCACAGGGACACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGGGGGGGTTGGGGAGGGCGGGCACAGGGAGGCACAGGGACACT  150

seq1  TCTCTCCTGAGTGCACTATCTCATACGAAGTTAACCCTGGTGACAGATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGAGTGCACTATCTCATACGAAGTTAACCCTGGTGACAGATAA  200

seq1  AATGACTTTGCTGCTATGAACTGAATTATGCCCCACAAAATTCATATGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTGCTGCTATGAACTGAATTATGCCCCACAAAATTCATATGCT  250

seq1  AAAGCCCTAATATTTTGGAGATAGATCCTTTAAATAAGTGAAGAAGCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTAATATTTTGGAGATAGATCCTTTAAATAAGTGAAGAAGCATT  300

seq1  AAAGAAAGGTTAAATGAAATCCGCAGGGTAAAGCAATAATCCAATGATTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGGTTAAATGAAATCCGCAGGGTAAAGCAATAATCCAATGATTG  350

seq1  GTATCCTTCTAGGAAAGAAGGGAGACACTACAGAGCCACACATGGCAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTCTAGGAAAGAAGGGAGACACTACAGAGCCACACATGGCAAAA  400

seq1  AAAAGAAAAAGAAAAAAAAAGTATGTAAAGATACGGAAGCCAGCTGCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGAAAAAAAAAGTATGTAAAGATACGGAAGCCAGCTGCTGT  450

seq1  GATGAAAGAAGGCCTCAGTAGGGCCTGAGCAGCTAACATTGTCATCTTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGAAGGCCTCAGTAGGGCCTGAGCAGCTAACATTGTCATCTTGT  500

seq1  ACCTCCAGTGGCCAGAATTATGAGAAAATAAAGTCCATTGTTCAAGCCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTGGCCAGAATTATGAGAAAATAAAGTCCATTGTTCAAGCCAT  550

seq1  CAGACTGGGTATTTTTGTTATGGCAACCCTAGCAGGCATGGAACTCTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGTATTTTTGTTATGGCAACCCTAGCAGGCATGGAACTCTAAC  600

seq1  CAGTCTCTGACAAGTCACATTGGAGGAATTGAGGGTAAAAATCCACTACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGACAAGTCACATTGGAGGAATTGAGGGTAAAAATCCACTACA  650

seq1  GTCAGAGCATAGGTGCCTTGGGCACCATGGTCTCTACCAGCCTTCCTGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCATAGGTGCCTTGGGCACCATGGTCTCTACCAGCCTTCCTGCA  700

seq1  TATTCTCACTACATGCTAATCCCCTCGATTCCCACACCTACCCTCACTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCACTACATGCTAATCCCCTCGATTCCCACACCTACCCTCACTCC  750

seq1  ACTATTGAATTC  760
      ||||||||||||
seq2  ACTATTGAATTC  762

seq1: chr15_102820963_102821875
seq2: B6Ng01-273C11.g_76_991

seq1  CCTGGGCTGTTAGAGGAAAGAGCTAAGTGAGAGCGCGCGCTCTACCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTGTTAGAGGAAAGAGCTAAGTGAGAGCGCGCGCTCTACCTACC  50

seq1  GACAGTGAGCAGAGAGCTGCAGCCGCCCGAGCCCGCAGCCGGCACCGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGAGCAGAGAGCTGCAGCCGCCCGAGCCCGCAGCCGGCACCGCGC  100

seq1  CCCCACCTGCCCAGCCCCCAGCCCAGCAGTCCAGCCCGGGGGAGCCGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTGCCCAGCCCCCAGCCCAGCAGTCCAGCCCGGGGGAGCCGGCC  150

seq1  AGCTTGGGGTTCGGTCCCGGGGGGAGGGGAGTTTCGGGGATACCCGGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGGTTCGGTCCCGGGGGGAGGGGAGTTTCGGGGATACCCGGCGG  200

seq1  GGGAGCGTGATCCAAGGGGAGGGGGCCGCGGGTTTTCATGTACCCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGTGATCCAAGGGGAGGGGGCCGCGGGTTTTCATGTACCCAGCAT  250

seq1  GAGCTCCTACTTCGTCAACCCCCTGTTTTCCAAATACAAAGGCGGCGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTACTTCGTCAACCCCCTGTTTTCCAAATACAAAGGCGGCGAGT  300

seq1  CCCTGGAACCGGCCTATTACGACTGCCGGTTCCCTCAGAGCGTGGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACCGGCCTATTACGACTGCCGGTTCCCTCAGAGCGTGGGCAGA  350

seq1  AGCCATGCGCTGGTGTACGGGCCCGGCGGCTCCGCGCCCGGTTTCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCGCTGGTGTACGGGCCCGGCGGCTCCGCGCCCGGTTTCCAGCA  400

seq1  CGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCT  450

seq1  CCAACTCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGCCACGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCGGGCTACCAGCAGAACCCATGCTCGCTGAGCTGCCACGGAGAC  500

seq1  GCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAATTCTATGGCTACGAGGCGCTCCCCAGACAGTCCCTTTATGG  550

seq1  GGCTCAGCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAATCCTCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAATCCTCCG  600

seq1  CCAACACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAGAACTCGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAGAACTCGTCT  650

seq1  CCCAGCCTCATGTTTCCATGGATGAGACCCCACGGTGAGAAGCCTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTCATGTTTCCATGGATGAGACCCCACGGTGAGAAGCCTTTTCT  700

seq1  CTTTCCCCCTTGGTCTCCCGCGCTCCGGGGTCTTCCCCCCTCCCTCGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCCTTGGTCTCCCGCGCTCCGGGGTCTTCCCCCCTCCCTCGCCT  750

seq1  CCTTTTTGTCTGCCCTAGCTCGCTTTCCTTCCTGGCTTTGGGGGTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTCTGCCCTAGCTCGCTTTCCTTCCTGGCTTTGGGGGTCTCTC  800

seq1  CCACTCCACTCCCGTGCCTGGGTGGGTTCCTGGGAGATTGAAAGGCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCACTCCCGTGCCTGGGTGGGTTCCTGGGAGATTGAAAGGCTTGG  850

seq1  CTGGGGGTGGAGCGTGGGGTGCCTGAGACATTGTGC-TTGTT-GGGGTGA  898
      |||||||||||||||||||||||||||| ||||||| ||||| |||||||
seq2  CTGGGGGTGGAGCGTGGGGTGCCTGAGATATTGTGCTTTGTTGGGGGTGA  900

seq1  AGG-TGGGGGAAAGGT  913
      ||| ||||| ||||||
seq2  AGGTTGGGGCAAAGGT  916