BAC Information

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BAC

Clone NameB6Ng01-273I13
Chromosome15 (Build37)
Map Location 53,135,081 - 53,229,723
singlet/doubletdoublet
Overlap geneExt1
Upstream geneSlc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631, Tnfrsf11b, LOC665280, EG383032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273I13.bB6Ng01-273I13.g
ACCGA075083GA075084
length3991,071
definitionB6Ng01-273I13.b B6Ng01-273I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,135,081 - 53,135,485)(53,228,644 - 53,229,723)
sequence
aagcatttttgtatatggaaagaattttggaaaatgaaatttagcaagaa
gacattttacaacatttcatttatcccaaacctgctaactagacagtggg
gagctgcagaagtggggccgatgcttcactgtcatatttggttttgttat
ctgtatagtgcgtacttagtataacgtgactaactgtttgcagtgtggcc
acagtaattttccccataaatccagtgattccttttggccatgaggcttt
acttgaaatgcgccaccaggactcacaagcctagcgttcacaagccctgc
agtttccaccattgccctctcaggacgccaccaccttcataggaaccagg
gcgaagccaacctgatggggcgggggcaggggttggagtgggggtaggg

gaattctttatcacacaaaaatatctttcaaaaatgaagaaaaagacttt
ttcagatctatagagaactggcagaattcaggacaacagacctgaatttt
aatcagaagggaagtgataccatatggaatttgaagtctgtggaaggaat
ggagagctgcagaatgagcgaggacatattgagatgtttataacatatgc
agaagtaaaattcgccaataatgatgaaaagaagtgtgttcaaactttat
tatgtggcaaaattccttcagatgaaattgactgggataaattgaatgag
accatgtgataaaatggtgcaagatagacaaacagaaataaagtcgtact
tcagaaaacaggacataaatgaccacacatggctgtaaccaactgatctt
cataacggtgtaaaagtgaatcaagtgagaacagtgttttcgcttaaaaa
aataatatttgaaaaattagtttttcaggtttaaattagttaacttcaac
ctatgtctcgtgttatatacaaaagtaagttaacgaaatatagacaatag
gtataaatataaaacaaaactataaaacctctagaggaaagcaaaggcaa
gagttggggagaaggttcagttggtaaggaagacatagcccaagcatgaa
gactggaattcagagctacatccccacattaacatggcatgggtgtggca
acctgactgttgggcacttgagaagtggaaacatgggattcctggtgtaa
actagctagtcaggctaggtcaatttgtgcactttgggttcaagtaagag
aacctacctcaaagtataatgtagacagcaattaaaggaaagttattgat
gtcaatctctggcctccagaatcatgggtacacatacacacccacacaca
ccataacacatgcagaaatgcacacacatatagccaacacaaaaaagaaa
ctatagatgagactctttaaaactgtcagttaagctgtgatttctacagg
gagtacctcaagcatatactataataaaggaaatactatacatatttcat
cagataagacttatttcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53135081_53135485
seq2: B6Ng01-273I13.b_44_448

seq1  GAATTCAAGCATTTTTGTATATGGAAAGAATTTTGGAAAATGAAATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCATTTTTGTATATGGAAAGAATTTTGGAAAATGAAATTTAG  50

seq1  CAAGAAGACATTTTACAACATTTCATTTATCCCAAACCTGCTAACTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGACATTTTACAACATTTCATTTATCCCAAACCTGCTAACTAGAC  100

seq1  AGTGGGGAGCTGCAGAAGTGGGGCCGATGCTTCACTGTCATATTTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAGCTGCAGAAGTGGGGCCGATGCTTCACTGTCATATTTGGTTT  150

seq1  TGTTATCTGTATAGTGCGTACTTAGTATAACGTGACTAACTGTTTGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTGTATAGTGCGTACTTAGTATAACGTGACTAACTGTTTGCAGT  200

seq1  GTGGCCACAGTAATTTTCCCCATAAATCCAGTGATTCCTTTTGGCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACAGTAATTTTCCCCATAAATCCAGTGATTCCTTTTGGCCATGA  250

seq1  GGCTTTACTTGAAATGCGCCACCAGGACTCACAAGCCTAGCGTTCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACTTGAAATGCGCCACCAGGACTCACAAGCCTAGCGTTCACAAG  300

seq1  CCCTGCAGTTTCCACCATTGCCCTCTCAGGACGCCACCACCTTCATAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGTTTCCACCATTGCCCTCTCAGGACGCCACCACCTTCATAGGA  350

seq1  ACCAGGGCGAAGCCAACCTGATGGGGCGGGGGCAGGGGTTGGAGTGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCGAAGCCAACCTGATGGGGCGGGGGCAGGGGTTGGAGTGGGGG  400

seq1  TAGGG  405
      |||||
seq2  TAGGG  405


seq1: chr15_53228644_53229723
seq2: B6Ng01-273I13.g_66_1136 (reverse)

seq1  TTTTGAAAAATAAAAGTTCTTATCCTTGATGAAATAATGTAATAGTATTT  50
      |||||  ||||||    |||||||  ||||||||| |||| |||||| ||
seq2  TTTTG--AAATAA---GTCTTATC--TGATGAAAT-ATGT-ATAGTA-TT  40

seq1  TTCTTTTATATAGTATATGCTTGAGGTACTCCCTGTAAGAAATCACAGCC  100
      | ||||  |||||||||||||||||||||||||||| |||||||||||| 
seq2  TCCTTTATTATAGTATATGCTTGAGGTACTCCCTGT-AGAAATCACAGCT  89

seq1  TAACTGACAGTTTTAAAGAGTCTCATCTATAGTTTCTTTTTTGTG-TGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAACTGACAGTTTTAAAGAGTCTCATCTATAGTTTCTTTTTTGTGTTGGC  139

seq1  TATATGTGTGTGCATTTCTGCATGTGTTATGGTGTGTGTGGGTGTGTATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTGTGCATTTCTGCATGTGTTATGGTGTGTGTGGGTGTGTATG  189

seq1  TGTACCCATGATTCTGGAGGCCAGAGATTGACATCAATAACTTTCC-TTA  248
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTACCCATGATTCTGGAGGCCAGAGATTGACATCAATAACTTTCCTTTA  239

seq1  ATTGCTGTCTACATTATACTTTGAGGTAGGTTCTCTTACTTGAACCCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTCTACATTATACTTTGAGGTAGGTTCTCTTACTTGAACCCAAA  289

seq1  GTGCACAAATTGACCTAGCCTGACTAGCTAGTTTACACCAGGAATCCCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAATTGACCTAGCCTGACTAGCTAGTTTACACCAGGAATCCCAT  339

seq1  GTTTCCACTTCTCAAGTGCCCAACAGTCAGGTTGCCACACCCATGCCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACTTCTCAAGTGCCCAACAGTCAGGTTGCCACACCCATGCCATG  389

seq1  TTAATGTGGGGATGTAGCTCTGAATTCCAGTCTTCATGCTTGGGCTATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGGGGATGTAGCTCTGAATTCCAGTCTTCATGCTTGGGCTATGT  439

seq1  CTTCCTTACCAACTGAACCTTCTCCCCAACTCTTGCCTTTGCTTTCCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTACCAACTGAACCTTCTCCCCAACTCTTGCCTTTGCTTTCCTCT  489

seq1  AGAGGTTTTATAGTTTTGTTTTATATTTATACCTATTGTCTATATTTCGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTTATAGTTTTGTTTTATATTTATACCTATTGTCTATATTTCGT  539

seq1  TAACTTACTTTTGTATATAACACGAGACATAGGTTGAAGTTAACTAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACTTTTGTATATAACACGAGACATAGGTTGAAGTTAACTAATTT  589

seq1  AAACCTGAAAAACTAATTTTTCAAATATTATTTTTTTAAGCGAAAACACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAAAAACTAATTTTTCAAATATTATTTTTTTAAGCGAAAACACT  639

seq1  GTTCTCACTTGATTCACTTTTACACCGTTATGAAGATCAGTTGGTTACAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACTTGATTCACTTTTACACCGTTATGAAGATCAGTTGGTTACAG  689

seq1  CCATGTGTGGTCATTTATGTCCTGTTTTCTGAAGTACGACTTTATTTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGGTCATTTATGTCCTGTTTTCTGAAGTACGACTTTATTTCTG  739

seq1  TTTGTCTATCTTGCACCATTTTATCACATGGTCTCATTCAATTTATCCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTATCTTGCACCATTTTATCACATGGTCTCATTCAATTTATCCCA  789

seq1  GTCAATTTCATCTGAAGGAATTTTGCCACATAATAAAGTTTGAACACACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTCATCTGAAGGAATTTTGCCACATAATAAAGTTTGAACACACT  839

seq1  TCTTTTCATCATTATTGGCGAATTTTACTTCTGCATATGTTATAAACATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATCATTATTGGCGAATTTTACTTCTGCATATGTTATAAACATC  889

seq1  TCAATATGTCCTCGCTCATTCTGCAGCTCTCCATTCCTTCCACAGACTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGTCCTCGCTCATTCTGCAGCTCTCCATTCCTTCCACAGACTTC  939

seq1  AAATTCCATATGGTATCACTTCCCTTCTGATTAAAATTCAGGTCTGTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCATATGGTATCACTTCCCTTCTGATTAAAATTCAGGTCTGTTGT  989

seq1  CCTGAATTCTGCCAGTTCTCTATAGATCTGAAAAAGTCTTTTTCTTCATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTCTGCCAGTTCTCTATAGATCTGAAAAAGTCTTTTTCTTCATT  1039

seq1  TTTGAAAGATATTTTTGTGTGATAAAGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  TTTGAAAGATATTTTTGTGTGATAAAGAATTC  1071


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