BAC Information

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BAC

Clone NameB6Ng01-273N24
Chromosome15 (Build37)
Map Location 17,301,484 - 17,416,727
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835, LOC666839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273N24.bB6Ng01-273N24.g
ACCGA075331GA075332
length1,1941,130
definitionB6Ng01-273N24.b B6Ng01-273N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,301,484 - 17,302,672)(17,415,596 - 17,416,727)
sequence
gaattctctacataacatgatcaattcacatcctcctcatgtccaaacca
tatcaattccaaaagagtagtaccaatattaatatactcagcattcatat
catctaactacattcaaaactgaatatggggaatattaatgtaaagtaca
ttgggatgcaaagcttcctgcctctccttgccagtgagcagaatcagtaa
gccgtgaactttgtgggcaagtaggtgtaggatacaaagagcaagaaaaa
gaaattcctaaggagacttaaactcaacaaggacagctagaaaccagtta
ataacagattcctgttttctgcttggttaaggatggccctttgtggctat
tcttcattgcaagctatctgttttactagtttttgtatcttaatccattc
ttagtgagagctcccatattagcattgctgggagactcatgaggtcacag
taagagctgctttagtgaagtatcctttgtaacaccggtagaaaggcatg
atagaaagcagatttgataaggaatcatatatttctcaaatatcttacat
gatgaaagttatatattgaaaaccttcttctagctcagccatggttttat
atagttccaagatttgatggttccttttaaagtaagtgactagggtcact
gtacaggaatatacttataactgaagtaagtcaatattgaccattaaaaa
taaatattgatatgtataggtgggtctaaaaaatagaaaacaaaatttag
actatatcattcaataggtttactcctaagaaagagatgtgctttggatt
gatttaattacagattctcttcaacataaaaggaattttgtagcaataac
tttattgtgatggttaaaattgattatccaatagaatgtagtagtacctt
agaagaggtacgcatatgggtaaactgtggaaaagattttagattagttt
attctaggaagaaaggcccactctaaaaataggtgggagcaaaagcctaa
ttcaaaggagatagaggttgtgataacactgacctgtctctattgtccct
gttcagtgagccacagatgagcagtcaccttcaagctcccaatcacagta
cacctcttacccagaatgtatttctaatatttacttgaagggacaaaaca
agctctctcgtcgtaatgcaattggcagagtcgcttttcctagc

gaattcctttaatttttcatatagtaaaacctaatattaaatttatttta
aattacttttttgtattctagaaacacactgatccagcatgttttggtaa
agctttcatgcaaagagtttaaaatttactctctgaaatttcatgtccta
atgaagaaagacatttaagtgaagcttttttgtactattcttaattttac
tgaaggtgagcattcatttctcggcattaaaattaccttttccaacataa
aagagtccttcacatcaagtctccgaggcattaatgtcagattcataatg
taataagactattgggttcatacagattctcaaaaaatcctgcaggacag
gcaatgcctagaaagggcctgacagacttaatctacatatttaatataaa
ggacagagaatccttcaataaaacatttctcctttaaatataccttcttt
gcaaagtctgaaaatagaggtgacctggtaagtctctttttgtttgtttt
tgaaagattaactgattgatagaatatgacagcaaaacacaaagaaagca
aaaagtctctgaaaagtatttatgcaccacgaatggtacctatagcaaag
taaacctgcagcattctgtgccatgcttttgacattattaacataaagaa
tccattaatcttccaagtacggtgggcaaattctaattcattaattattt
ttctctgtagaactaaaggaagtccacaactaactaactgaaagccaggc
aaacatgggcaatgccaacaacttaatttcccatatcaatacatcttact
taagagttttactaacaatattacctcgataaaatacttaactgacttga
aggaattttgaaaacctttacagttaacagtttttatatctgaaagtgaa
actcatttgattttgccttgactatcattacaagcagttgatcacccgaa
atgaaatataacaaaatagatgtatgccgatgtattcattattcactgac
agcgaaacatctgtctacaaagtagaattgggctacaaaagaaaaataga
aatgttgttaggatgagaaagcagaaccacgagaaaatagcttgcgtgaa
tgacaaatggaattttagaaacacggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17301484_17302672
seq2: B6Ng01-273N24.b_48_1241

seq1  GAATTCTCTACATAACATGATCAATTCACATCCTCCTCATGTCCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACATAACATGATCAATTCACATCCTCCTCATGTCCAAACCA  50

seq1  TATCAATTCCAAAAGAGTAGTACCAATATTAATATACTCAGCATTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTCCAAAAGAGTAGTACCAATATTAATATACTCAGCATTCATAT  100

seq1  CATCTAACTACATTCAAAACTGAATATGGGGAATATTAATGTAAAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACTACATTCAAAACTGAATATGGGGAATATTAATGTAAAGTACA  150

seq1  TTGGGATGCAAAGCTTCCTGCCTCTCCTTGCCAGTGAGCAGAATCAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGCAAAGCTTCCTGCCTCTCCTTGCCAGTGAGCAGAATCAGTAA  200

seq1  GCCGTGAACTTTGTGGGCAAGTAGGTGTAGGATACAAAGAGCAAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGAACTTTGTGGGCAAGTAGGTGTAGGATACAAAGAGCAAGAAAAA  250

seq1  GAAATTCCTAAGGAGACTTAAACTCAACAAGGACAGCTAGAAACCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTAAGGAGACTTAAACTCAACAAGGACAGCTAGAAACCAGTTA  300

seq1  ATAACAGATTCCTGTTTTCTGCTTGGTTAAGGATGGCCCTTTGTGGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGATTCCTGTTTTCTGCTTGGTTAAGGATGGCCCTTTGTGGCTAT  350

seq1  TCTTCATTGCAAGCTATCTGTTTTACTAGTTTTTGTATCTTAATCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTGCAAGCTATCTGTTTTACTAGTTTTTGTATCTTAATCCATTC  400

seq1  TTAGTGAGAGCTCCCATATTAGCATTGCTGGGAGACTCATGAGGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGAGCTCCCATATTAGCATTGCTGGGAGACTCATGAGGTCACAG  450

seq1  TAAGAGCTGCTTTAGTGAAGTATCCTTTGTAACACCGGTAGAAAGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGCTTTAGTGAAGTATCCTTTGTAACACCGGTAGAAAGGCATG  500

seq1  ATAGAAAGCAGATTTGATAAGGAATCATATATTTCTCAAATATCTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCAGATTTGATAAGGAATCATATATTTCTCAAATATCTTACAT  550

seq1  GATGAAAGTTATATATTGAAAACCTTCTTCTAGCTCAGCCATGGTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGTTATATATTGAAAACCTTCTTCTAGCTCAGCCATGGTTTTAT  600

seq1  ATAGTTCCAAGATTTGATGGTTCCTTTTAAAGTAAGTGACTAGGGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCAAGATTTGATGGTTCCTTTTAAAGTAAGTGACTAGGGTCACT  650

seq1  GTACAGGAATATACTTATAACTGAAGTAAGTCAATATTGACCATTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAATATACTTATAACTGAAGTAAGTCAATATTGACCATTAAAAA  700

seq1  TAAATATTGATATGTATAGGTGGGTCTAAAAAATAGAAAACAAAATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTGATATGTATAGGTGGGTCTAAAAAATAGAAAACAAAATTTAG  750

seq1  ACTATATCATTCAATAGGTTTACTCCTAAGAAAGAGATGTGCTTTGGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATCATTCAATAGGTTTACTCCTAAGAAAGAGATGTGCTTTGGATT  800

seq1  GATTTAATTACAGATTCTCTTCAACATAAAAGGAATTTTGTAGCAATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATTACAGATTCTCTTCAACATAAAAGGAATTTTGTAGCAATAAC  850

seq1  TTTATTGTGATGGTTAAAATTGATTATCCAATAGAATGTAGTAGTACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGATGGTTAAAATTGATTATCCAATAGAATGTAGTAGTACCTT  900

seq1  AGAAGAGGTACGCATATGGGTAAAACTGTGGAAAAGATTTTAGATTAGTT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAGAGGTACGCATATGGGT-AAACTGTGGAAAAGATTTTAGATTAGTT  949

seq1  TATTCTAGGAAGAAAGGCCCACTCTAAAAATAGGT-GGAGCAAAAGCCTA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTCTAGGAAGAAAGGCCCACTCTAAAAATAGGTGGGAGCAAAAGCCTA  999

seq1  AATCAAAGGAGATAAGAGGTTGTGAATAACACTGACCTGTCTCTA-TGTC  1048
      | ||||||||||| |||||||||| |||||||||||||||||||| ||||
seq2  ATTCAAAGGAGAT-AGAGGTTGTG-ATAACACTGACCTGTCTCTATTGTC  1047

seq1  CCTG-TCAGTGAGCACAAGATGAGCAGTCA-CTTCAAGCTCCC-ATCACA  1095
      |||| |||||||||   ||||||||||||| |||||||||||| ||||||
seq2  CCTGTTCAGTGAGCCACAGATGAGCAGTCACCTTCAAGCTCCCAATCACA  1097

seq1  GTAACACTCTTA-CCAGAATGTA-TTCT-ATATTTACCTG-AGGGACAAA  1141
      |||   |||||| |||||||||| |||| |||||||| || |||||||||
seq2  GTACACCTCTTACCCAGAATGTATTTCTAATATTTACTTGAAGGGACAAA  1147

seq1  ACAAGCTCTCTCTTCCTTAATTGGTATTTGCAGA-TCGTTTTTCCTAGC  1189
      |||||||||||| || |  | ||  ||| ||||| ||| ||||||||||
seq2  ACAAGCTCTCTCGTCGT--AATGCAATTGGCAGAGTCGCTTTTCCTAGC  1194


seq1: chr15_17415596_17416727
seq2: B6Ng01-273N24.g_65_1194 (reverse)

seq1  TATTC--TGTTTCTAAAATTCATTTTGTCATCTCACGCAAGCTATTTCTC  48
      |||||  ||||||||||||||  |||||||| ||||||||||||||| ||
seq2  TATTCCGTGTTTCTAAAATTCCATTTGTCAT-TCACGCAAGCTATTT-TC  48

seq1  T-GTGGTTCTGC-TTCTCATCCTA--CACATTCTAATTTTTTCCTTTTGT  94
      | |||||||||| |||||||||||   |||||   ||||||  |||||||
seq2  TCGTGGTTCTGCTTTCTCATCCTAACAACATTTCTATTTTT--CTTTTGT  96

seq1  AGCCCAATTCTACTTTGTAGAACAGATGTTTCGCCTGTCAGTGAATAATG  144
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AGCCCAATTCTACTTTGTAG-ACAGATGTTTCG-CTGTCAGTGAATAATG  144

seq1  AATACATCGGCATAACATCTATTTTGTTATATTTCATTTCGGGTGATCAA  194
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATACATCGGCAT-ACATCTATTTTGTTATATTTCATTTCGGGTGATCAA  193

seq1  CTGCTTTGTAATGATAGTCAAGGCAAAATCAAATGAGTTTCACTTTCAGA  244
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGC-TTGTAATGATAGTCAAGGCAAAATCAAATGAGTTTCACTTTCAGA  242

seq1  TATAAAAACTGTTAACTGTAAAGGTTTTCAAAATTCCTTCAAGTCAGTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACTGTTAACTGTAAAGGTTTTCAAAATTCCTTCAAGTCAGTTA  292

seq1  AGTATTTTATCGAGGTAATATTGTTAGTAAAACTCTTAAGTAAGATGTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTATCGAGGTAATATTGTTAGTAAAACTCTTAAGTAAGATGTAT  342

seq1  TGATATGGGAAATTAAGTTGTTGGCATTGCCCATGTTTGCCTGGCTTTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGGAAATTAAGTTGTTGGCATTGCCCATGTTTGCCTGGCTTTCA  392

seq1  GTTAGTTAGTTGTGGACTTCCTTTAGTTCTACAGAGAAAAATAATTAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTAGTTGTGGACTTCCTTTAGTTCTACAGAGAAAAATAATTAATG  442

seq1  AATTAGAATTTGCCCACCGTACTTGGAAGATTAATGGATTCTTTATGTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATTTGCCCACCGTACTTGGAAGATTAATGGATTCTTTATGTTA  492

seq1  ATAATGTCAAAAGCATGGCACAGAATGCTGCAGGTTTACTTTGCTATAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCAAAAGCATGGCACAGAATGCTGCAGGTTTACTTTGCTATAGG  542

seq1  TACCATTCGTGGTGCATAAATACTTTTCAGAGACTTTTTGCTTTCTTTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCGTGGTGCATAAATACTTTTCAGAGACTTTTTGCTTTCTTTGT  592

seq1  GTTTTGCTGTCATATTCTATCAATCAGTTAATCTTTCAAAAACAAACAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTGTCATATTCTATCAATCAGTTAATCTTTCAAAAACAAACAAA  642

seq1  AAGAGACTTACCAGGTCACCTCTATTTTCAGACTTTGCAAAGAAGGTATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTTACCAGGTCACCTCTATTTTCAGACTTTGCAAAGAAGGTATA  692

seq1  TTTAAAGGAGAAATGTTTTATTGAAGGATTCTCTGTCCTTTATATTAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGAGAAATGTTTTATTGAAGGATTCTCTGTCCTTTATATTAAAT  742

seq1  ATGTAGATTAAGTCTGTCAGGCCCTTTCTAGGCATTGCCTGTCCTGCAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATTAAGTCTGTCAGGCCCTTTCTAGGCATTGCCTGTCCTGCAGG  792

seq1  ATTTTTTGAGAATCTGTATGAACCCAATAGTCTTATTACATTATGAATCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGAATCTGTATGAACCCAATAGTCTTATTACATTATGAATCT  842

seq1  GACATTAATGCCTCGGAGACTTGATGTGAAGGACTCTTTTATGTTGGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAATGCCTCGGAGACTTGATGTGAAGGACTCTTTTATGTTGGAAA  892

seq1  AGGTAATTTTAATGCCGAGAAATGAATGCTCACCTTCAGTAAAATTAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTTAATGCCGAGAAATGAATGCTCACCTTCAGTAAAATTAAGA  942

seq1  ATAGTACAAAAAAGCTTCACTTAAATGTCTTTCTTCATTAGGACATGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACAAAAAAGCTTCACTTAAATGTCTTTCTTCATTAGGACATGAAA  992

seq1  TTTCAGAGAGTAAATTTTAAACTCTTTGCATGAAAGCTTTACCAAAACAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGAGTAAATTTTAAACTCTTTGCATGAAAGCTTTACCAAAACAT  1042

seq1  GCTGGATCAGTGTGTTTCTAGAATACAAAAAAGTAATTTAAAATAAATTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCAGTGTGTTTCTAGAATACAAAAAAGTAATTTAAAATAAATTT  1092

seq1  AATATTAGGTTTTACTATATGAAAAATTAAAGGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGGTTTTACTATATGAAAAATTAAAGGAATTC  1130


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