BAC Information

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BAC

Clone NameB6Ng01-274P20
Chromosome15 (Build37)
Map Location 55,086,471 - 55,245,556
singlet/doubletdoublet
Overlap geneCol14a1
Upstream geneTnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
Downstream geneMrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274P20.bB6Ng01-274P20.g
ACCGA076147GA076148
length1,0571,162
definitionB6Ng01-274P20.b B6Ng01-274P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,086,471 - 55,087,539)(55,244,393 - 55,245,556)
sequence
gaattccacctgcctctgcctcccaagtgctgggattgaaggtgtgcacc
accactgcctggctgagaactttttttttttttttaaagatttcttattt
gtttttcattacaggtggttgtgagccatcatgtggttggtgggatttga
actcatgacctcccgaagagaagtggatgctctttaaccactgagccatc
tcaccagcgagaacatttttttttaaagatagggtattggtgacagttgg
cgggtctccctacaggatgtgatatagtcacagtgagtctccctttcttt
ctttcttttttattttttgtttgtttgtttttcgagacatggtttctctg
taaccctggctgtcctggaactcactttgtagaccagctggcctcgaact
cagaaatccgccagcctctgcctcccgagtgctgggattaaaggtgtgta
ccaacacacccggcgagtctccctttcttaaccccatgaggataatcctt
cgccaccatgatgtgctctcctaactcattttgggcactgttacctacac
acgtcctcttttcatagacaaggaaactgagaacaaacaaggtacaaaaa
aaaaaaaaaaaaaaaaaaaaaaagatagggtgttggtggtcatagtgcac
acctttaaccctagccctctggaggcagagacaggtagaggcagatctct
gtgagttagaggccagcctggtctacagagcttgttctaggacacccagg
gctacacagagaaatcttatctcaaaaaaccaaaaaataaaaaaaaaaaa
attaaaaagctattgctgtgtagcataggctgtcctcaaactcatactaa
tcttcctacctcggggaaataaatctttctttctctctctggcagtctgt
ctgtctctctctctctctctagtctcactctctccctttcccccctcgct
cgtcctccacaatgcacacacacagcctcataaatataataatactcgtg
tccctagagccctgtgactcatcagatttgcattgtgctattctaatttt
agaatgt
gaattcactaaaggggcttgggagttaaagactcccactaggatttcttt
tatgtagaggaaaatcaactctctgctgcacagtaaacttatcaacagtt
tccattttccttaaagctctgtttagctgggcagactaagacttttgatc
gctttcccttcacttaggtgtccaagtgtttcagatataaatagtgctaa
ataaaagaaactcttaaaggaactcagtctaggagccacccaaagtaaac
attgttattattttgctgtgcagcgcttacaagtgcatgtgtgagattaa
attgttactttttccaaatcagcaggaattagcttcaaggagctaaatat
ggttcttgaaaacaaaaagcaaagtatctcatgctgggacgtttctgcag
gttcttatttttagaaaccaaattataatagcggagtaataatagggaaa
ataaaatacccaaattacatatttaattggcacatctaattatatttttt
aagtttgccaatcatgaaacatttggaatgtatttattgttgaagtgaaa
ttacaatgtaatccaaatcatctgggtacccattaactttccaaaaacca
ctcccagatcaatggcatgagcttgctggctatgcactatccgctaggtc
ctgaggggcatcgccgtgccctgtaatgtttcttccatcacctggtgata
gataattttgagctcaaataaaagattttcattgtaacttaaaaggggtg
ggagcaaagttattaatgagcagtgatgacttttcgagaattcttcccta
gtgtgttaaaaatgacacagcaaaagaagcaaatttagtaatgatatatc
atagtaaccaatagagcgtactttgtgagggagtagtcaagtagcccctg
gatggaaactgggacaccagtataagaaacaattctaaaacatctcaagt
ttggaggattatacccaacagatttgattttctatggtgcataatatata
gggactagacaaagaaaccaagatataaatttagaaatgtgggggaggcc
atgagtagaatgtaccagatttgtcacaatagaaactgcacataaaacaa
ctaagaaacttatcactaaggcctttgaaagagatgcatgaattaggaat
agggagaataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55086471_55087539
seq2: B6Ng01-274P20.b_44_1100

seq1  GAATTCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTGAAGGTGTGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTGAAGGTGTGCACC  50

seq1  ACCACTGCCTGGCTGAGAACTTTTTTTTTTTTTTTAAAGATTTCTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTGGCTGAGAACTTTTTTTTTTTTTTTAAAGATTTCTTATTT  100

seq1  GTTTTTCATTACAGGTGGTTGTGAGCCATCATGTGGTTGGTGGGATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATTACAGGTGGTTGTGAGCCATCATGTGGTTGGTGGGATTTGA  150

seq1  ACTCATGACCTCCCGAAGAGAAGTGGATGCTCTTTAACCACTGAGCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGACCTCCCGAAGAGAAGTGGATGCTCTTTAACCACTGAGCCATC  200

seq1  TCACCAGCGAGAACATTTTTTTTTAAAGATAGGGTATTGGTGACAGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCGAGAACATTTTTTTTTAAAGATAGGGTATTGGTGACAGTTGG  250

seq1  CGGGTCTCCCTACAGGATGTGATATAGTCACAGTGAGTCTCCCTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTCCCTACAGGATGTGATATAGTCACAGTGAGTCTCCCTTTCTTT  300

seq1  CTTTCTTTTTTATTTTTTGTTTGTTTGTTTTTCGAGACATGGTTTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTATTTTTTGTTTGTTTGTTTTTCGAGACATGGTTTCTCTG  350

seq1  TAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGCTGGCCTCGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGCTGGCCTCGAACT  400

seq1  CAGAAATCCGCCAGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCGCCAGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTA  450

seq1  CCAACACACCCGGCGAGTCTCCCTTTCTTAACCCCATGAGGATAATCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACCCGGCGAGTCTCCCTTTCTTAACCCCATGAGGATAATCCTT  500

seq1  CGCCACCATGATGTGCTCTCCTAACTCATTTTGGGCACTGTTACCTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCATGATGTGCTCTCCTAACTCATTTTGGGCACTGTTACCTACAC  550

seq1  ACGTCCTCTTTTCATAGACAAGGAAACTGAGAACAAACAAGGTACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCTCTTTTCATAGACAAGGAAACTGAGAACAAACAAGGTACAAAAA  600

seq1  AAAAAAAAAAAAAAAAAAAAAAAGATAGGGTGTTGGTGGTCATAGTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAGATAGGGTGTTGGTGGTCATAGTGCAC  650

seq1  ACCTTTAACCCTAGCCCTCTGGAGGCAGAGACAGGTAGAGGCAGATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACCCTAGCCCTCTGGAGGCAGAGACAGGTAGAGGCAGATCTCT  700

seq1  GTGAGTTAGAGGCCAGCCTGGTCTACAGAGCTTGTTCTAGGACACCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTAGAGGCCAGCCTGGTCTACAGAGCTTGTTCTAGGACACCCAGG  750

seq1  GCTACACAGAGAAATCTTATCTCAAAAAACCAAAAAATAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAATCTTATCTCAAAAAACCAAAAAATAAAAAAAAAAAA  800

seq1  ATTAAAAAGCTATTGCTGTGTAGCATAGGCTGTCCTCAAACTCATACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGCTATTGCTGTGTAGCATAGGCTGTCCTCAAACTCATACTAA  850

seq1  TCTTCCTACCTCGGGG-AATTAATCTTTCTTTCTCTCTCTGTCTGTCTGT  899
      |||||||||||||||| ||| |||||||||||||||||||| | ||||||
seq2  TCTTCCTACCTCGGGGAAATAAATCTTTCTTTCTCTCTCTGGCAGTCTGT  900

seq1  CTGTCTCTCTCTCTCTCTCT-GTCTCTCTCTCTCTCTTTCTCTCCCTCGC  948
      |||||||||||||||||||| ||||| ||||||| ||||| | |||||||
seq2  CTGTCTCTCTCTCTCTCTCTAGTCTCACTCTCTCCCTTTC-CCCCCTCGC  949

seq1  TCCTTCCTCCAC-ATGCAAACACACACAGCCTCATAAA-ATAATTAATAA  996
      | | |||||||| ||||  ||||||||||||||||||| |||||     |
seq2  T-CGTCCTCCACAATGC--ACACACACAGCCTCATAAATATAAT-----A  991

seq1  ATACTCGTGGTCCCCTAGAGCCCTGTTGGACTCATTCAGTATTTGCATAT  1046
      |||||||||   ||||||||||||||  |||||| |||| |||||||| |
seq2  ATACTCGTG--TCCCTAGAGCCCTGT--GACTCA-TCAG-ATTTGCAT-T  1034

seq1  GTGCTATCTTATTTTTAGAATGT  1069
      |||||||  || |||||||||||
seq2  GTGCTATTCTAATTTTAGAATGT  1057

seq1: chr15_55244393_55245556
seq2: B6Ng01-274P20.g_68_1229 (reverse)

seq1  ATTATTCTCCCCTATTCTTAA-TCATGGGCATCTCTTCTCAAGG-CTTTG  48
      |||||||| |||||||| ||| ||||  |||||||||   |||| ||| |
seq2  ATTATTCT-CCCTATTCCTAATTCAT--GCATCTCTTTCAAAGGCCTTAG  47

seq1  TGATAAATTTTCTTTAAGTTGTTTTATGTGCA-TTTCTA-TGTGACAAAT  96
      |||| || ||||||  |||||||||||||||| |||||| ||||||||||
seq2  TGAT-AAGTTTCTT--AGTTGTTTTATGTGCAGTTTCTATTGTGACAAAT  94

seq1  CTGGTACATTCTTACTCATGGCCT-CCCCACATTTTCTTAATTTATATCT  145
      ||||||||||| |||||||||||| ||||||| ||||| |||||||||||
seq2  CTGGTACATTC-TACTCATGGCCTCCCCCACA-TTTCTAAATTTATATCT  142

seq1  TGGTTTCTTTTGTCCTAGTTCCTATATATTTATTGCA-CATAGAAAATCA  194
      ||||||| ||||| ||||| ||||||||||   |||| ||||||||||||
seq2  TGGTTTC-TTTGT-CTAGTCCCTATATATT--ATGCACCATAGAAAATCA  188

seq1  AATCTGTT-GGTATAATCCT-CAAACTTGAGATGTTTTAGAATTGTTTCT  242
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  AATCTGTTGGGTATAATCCTCCAAACTTGAGATGTTTTAGAATTGTTTCT  238

seq1  TATACTGGTGT-CCAGTTTCCATCCAGGGGCTACTTGACTACTCCCTCAC  291
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGTGTCCCAGTTTCCATCCAGGGGCTACTTGACTACTCCCTCAC  288

seq1  -AAGTACGCTCTATTGGTTACTATGATATATCATTACTAAATTTGCTTCT  340
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACGCTCTATTGGTTACTATGATATATCATTACTAAATTTGCTTCT  338

seq1  TTTGCTGTGTCATTTTTAACACACTAGGGAAGAATTCTCGAAAAGTCATC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGTCATTTTTAACACACTAGGGAAGAATTCTCGAAAAGTCATC  388

seq1  ACTGCTCATTAATAACTTTGCTCCCACCCCTTTTAAGTTACAATGAAAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCATTAATAACTTTGCTCCCACCCCTTTTAAGTTACAATGAAAAT  438

seq1  CTTTTATTTGAGCTCAAAATTATCTATCACCAGGTGATGGAAGAAACATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTGAGCTCAAAATTATCTATCACCAGGTGATGGAAGAAACATT  488

seq1  ACAGGGCACGGCGATGCCCCTCAGGACCTAGCGGATAGTGCATAGCCAGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCACGGCGATGCCCCTCAGGACCTAGCGGATAGTGCATAGCCAGC  538

seq1  AAGCTCATGCCATTGATCTGGGAGTGGTTTTTGGAAAGTTAATGGGTACC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGCCATTGATCTGGGAGTGGTTTTTGGAAAGTTAATGGGTACC  588

seq1  CAGATGATTTGGATTACATTGTAATTTCACTTCAACAATAAATACATTCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTTGGATTACATTGTAATTTCACTTCAACAATAAATACATTCC  638

seq1  AAATGTTTCATGATTGGCAAACTTAAAAAATATAATTAGATGTGCCAATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCATGATTGGCAAACTTAAAAAATATAATTAGATGTGCCAATT  688

seq1  AAATATGTAATTTGGGTATTTTATTTTCCCTATTATTACTCCGCTATTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAATTTGGGTATTTTATTTTCCCTATTATTACTCCGCTATTAT  738

seq1  AATTTGGTTTCTAAAAATAAGAACCTGCAGAAACGTCCCAGCATGAGATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTTCTAAAAATAAGAACCTGCAGAAACGTCCCAGCATGAGATA  788

seq1  CTTTGCTTTTTGTTTTCAAGAACCATATTTAGCTCCTTGAAGCTAATTCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTTTGTTTTCAAGAACCATATTTAGCTCCTTGAAGCTAATTCC  838

seq1  TGCTGATTTGGAAAAAGTAACAATTTAATCTCACACATGCACTTGTAAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTGGAAAAAGTAACAATTTAATCTCACACATGCACTTGTAAGC  888

seq1  GCTGCACAGCAAAATAATAACAATGTTTACTTTGGGTGGCTCCTAGACTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACAGCAAAATAATAACAATGTTTACTTTGGGTGGCTCCTAGACTG  938

seq1  AGTTCCTTTAAGAGTTTCTTTTATTTAGCACTATTTATATCTGAAACACT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTAAGAGTTTCTTTTATTTAGCACTATTTATATCTGAAACACT  988

seq1  TGGACACCTAAGTGAAGGGAAAGCGATCAAAAGTCTTAGTCTGCCCAGCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCTAAGTGAAGGGAAAGCGATCAAAAGTCTTAGTCTGCCCAGCT  1038

seq1  AAACAGAGCTTTAAGGAAAATGGAAACTGTTGATAAGTTTACTGTGCAGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGCTTTAAGGAAAATGGAAACTGTTGATAAGTTTACTGTGCAGC  1088

seq1  AGAGAGTTGATTTTCCTCTACATAAAAGAAATCCTAGTGGGAGTCTTTAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTGATTTTCCTCTACATAAAAGAAATCCTAGTGGGAGTCTTTAA  1138

seq1  CTCCCAAGCCCCTTTAGTGAATTC  1164
      ||||||||||||||||||||||||
seq2  CTCCCAAGCCCCTTTAGTGAATTC  1162