BAC Information

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BAC

Clone NameB6Ng01-275D04
Chromosome15 (Build37)
Map Location 21,854,241 - 21,882,701
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275D04.bB6Ng01-275D04.g
ACCGA076302GA076303
length7731,119
definitionB6Ng01-275D04.b B6Ng01-275D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,854,241 - 21,854,901)(21,882,184 - 21,882,701)
sequence
gaattcatgcagttgaatccttctcaacagtctgttttacgggaaccttt
attaccatgacccgcagttctggttccggaatgagggatcttccttgcgc
cggtgatggtaaccgtcccaggttttcttgtcccaggattttctcgtccc
gtcccgggtctcagcaccaactcttaaacgcgttctcatgaccggccagg
aagaacacaacaaaccagaatcttctgcggcaaaactttattgcttacat
cttcaggagccaggagcacaagccccaagccccaaaaacgaaaagccccc
cgcttacatctttaggagccagagcgccagtgcgccagcgcgccagagcg
ccagagcgcagagcgcaaaagcgcaagcaagagagcgcaagtaagagaga
gaatggcggaaaccctgtccccttttaaagagaattatccttcgcctagg
acgcatcactccctaattggctatagcccatggccgagtaaaggcagagt
acatgtagtgaaaaattactcttggcacatgcgcagattatttgtttacc
acttagaacacaggatgtcagtgccatcttgtgacggcgaatgtgggggc
ggctcccaacaagcttgaacactttttatctcacattacttttgactata
tgttaaaatttactattttgtggttttaaggagtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgctgtgtgtgtgtgtgtgtttcaacattaggttgtgta
cccgtgtatctctatgtgtgttt

gaattcaatgggatacaggtcagtttagttcagtgcagtccagagcaggc
caattcctgtaattaagaggcagagaaattcagtcaaatctgagaaaagc
cagtttgaatcagtcagtttagagaatttgagtcagaacagctgagttga
accagccagccaggattcagaaagaggttagaaagagtgagtttatttag
cagtaagcctcagaggctgcaacattataggcctaggttagcagatggag
gctagaagttgaagcctttgaggttagaagattagactgtgtggagacta
gaagcttccatgactagtcctagggatagatatttttatttacatttcaa
atattatcccctttcctgatttcccccagaaaccccctataccatccccc
cctccctttcctctatgagggtggtaccacacccacaaagtcctgccttc
ccaaaatctgattccttgacacgggggcatcgaacccccacaggatcaag
ggcctctcctcccattgatgcccgacaaggccatcctctgctcatatgca
gctggagccatgggtccctacatgtgtaagttttggttggtggtttagta
cctgggagctctgagtggtctggttgtttgatattgttgttcttcttatg
ggctaacaaatcccttcagctcccatgggtattttgttcccccttctaag
aaggatgtaattatccaaattttgttctttcgtcttgagcttcatgtagt
ctgtgaattgtatcttgggtattctgaacttttgggctaatatccacttt
tcagtgagtgaatactatgtatgttcttttgtgattgggttgtaacagag
atttaaacatgaacaatcaaggagatgccatcgcttataaaaaaagagcc
ataccgaccccagtcacacatgcggccttctctggagaggttgctctgag
tccttccagtaagacactcgatttgatactcacttttcctctgatattat
ataaatcaaagtaataccttgctttgagtgtagcctaatggcatatttat
ggctgagtttaaagtaaaaacaacaaacaaaacgacaaaaaagaacaatc
atatgactttcatgtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21854241_21854901
seq2: B6Ng01-275D04.b_156_816

seq1  CCGTCCCAGGTTTTCTTGTCCCAGGATTTTCTCGTCCCGTCCCGGGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCAGGTTTTCTTGTCCCAGGATTTTCTCGTCCCGTCCCGGGTCTC  50

seq1  AGCACCAACTCTTAAACGCGTTCTCATGACCGGCCAGGAAGAACACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAACTCTTAAACGCGTTCTCATGACCGGCCAGGAAGAACACAACA  100

seq1  AACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCA  150

seq1  GGAGCACAAGCCCCAAGCCCCAAAAACGAAAAGCCCCCCGCTTACATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACAAGCCCCAAGCCCCAAAAACGAAAAGCCCCCCGCTTACATCTT  200

seq1  TAGGAGCCAGAGCGCCAGTGCGCCAGCGCGCCAGAGCGCCAGAGCGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCAGAGCGCCAGTGCGCCAGCGCGCCAGAGCGCCAGAGCGCAGA  250

seq1  GCGCAAAAGCGCAAGCAAGAGAGCGCAAGTAAGAGAGAGAATGGCGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAAAGCGCAAGCAAGAGAGCGCAAGTAAGAGAGAGAATGGCGGAAA  300

seq1  CCCTGTCCCCTTTTAAAGAGAATTATCCTTCGCCTAGGACGCATCACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCCCTTTTAAAGAGAATTATCCTTCGCCTAGGACGCATCACTCC  350

seq1  CTAATTGGCTATAGCCCATGGCCGAGTAAAGGCAGAGTACATGTAGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGCTATAGCCCATGGCCGAGTAAAGGCAGAGTACATGTAGTGAA  400

seq1  AAATTACTCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450

seq1  GGATGTCAGTGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGTGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAA  500

seq1  GCTTGAACACTTTTTATCTCACATTACTTTTGACTATATGTTAAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAACACTTTTTATCTCACATTACTTTTGACTATATGTTAAAATTTA  550

seq1  CTATTTTGTGGTTTTAAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTGGTTTTAAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  600

seq1  GCTGTGTGTGTGTGTGTGTTTCTACATTTGGTTGTGTACCCGTGTATCTC  650
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GCTGTGTGTGTGTGTGTGTTTCAACATTAGGTTGTGTACCCGTGTATCTC  650

seq1  TATGTGTGTTT  661
      |||||||||||
seq2  TATGTGTGTTT  661


seq1: chr15_21882184_21882701
seq2: B6Ng01-275D04.g_681_1187 (reverse)

seq1  ACATACATGAAAGTCATATTGATTTGTTTCTTTTTTGTCCTGTTTTTGTT  50
      |||||||||||||||||| |||||   ||||||||||||        |||
seq2  ACATACATGAAAGTCATA-TGATT--GTTCTTTTTTGTC--------GTT  39

seq1  TTGTTTTGTTTTTTAACTTTAAACCTCAGCCATAAATATGCCATTTAGGC  100
      ||||||  | |||| |||||||| ||||||||||||||||||| ||||||
seq2  TTGTTTGTTGTTTTTACTTTAAA-CTCAGCCATAAATATGCCA-TTAGGC  87

seq1  TACACTCAAAGCAAGGTATTACTTTGATTTATAT-ATATCAGAGGAAAAG  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACACTCAAAGCAAGGTATTACTTTGATTTATATAATATCAGAGGAAAAG  137

seq1  TGAGTATCAAATCGAGTGTCTTACTGGAAGGACTCAGAGCAACCTCTCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCAAATCGAGTGTCTTACTGGAAGGACTCAGAGCAACCTCTCCA  187

seq1  GAGAAGGCCGCATGTGTGACTGGGGTCGGTATGGCTC-TTTTTTATAAGC  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGAAGGCCGCATGTGTGACTGGGGTCGGTATGGCTCTTTTTTTATAAGC  237

seq1  GATGGCATCTCCTTGATTGTTCATGTTTAAATCTCTGTTACAACCCAATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATCTCCTTGATTGTTCATGTTTAAATCTCTGTTACAACCCAATC  287

seq1  ACAAAAGAACATACATAGTATTCACTCACTGAAAAGTGGATATTAGCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACATACATAGTATTCACTCACTGAAAAGTGGATATTAGCCCA  337

seq1  AAAGTTCAGAATACCCAAGATACAATTCACAGACTACATGAAGCTCAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAGAATACCCAAGATACAATTCACAGACTACATGAAGCTCAAGA  387

seq1  CGAAAGAACAAAATTTGGATAATTACATCCTTCTTAGAAGGGGGAACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAACAAAATTTGGATAATTACATCCTTCTTAGAAGGGGGAACAAA  437

seq1  ATACCCATGGGAGCTGAAGGGATTTGTTAGCCCATAAGAAGAACAACAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATGGGAGCTGAAGGGATTTGTTAGCCCATAAGAAGAACAACAAT  487

seq1  ATCAAACAACCAGACCACTC  518
      ||||||||||||||||||||
seq2  ATCAAACAACCAGACCACTC  507


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