BAC Information

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BAC

Clone NameB6Ng01-275N19
Chromosome15 (Build37)
Map Location 73,266,273 - 73,412,540
singlet/doubletdoublet
Overlap geneDennd3, Slc45a4
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929
Downstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275N19.bB6Ng01-275N19.g
ACCGA076789GA076790
length1,032340
definitionB6Ng01-275N19.b B6Ng01-275N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,411,537 - 73,412,540)(73,266,273 - 73,266,612)
sequence
gaattccaagcgtggatttggcattgactgcgccatcctctcctgtcagg
tctacatctcccagatcctggttgcatctgcccttgggggcgtggtcgac
gctgtgaatagtatcgttgtcatccccatagtggcctctgtaggctcttt
cctgggcttcttgacagccacattcctggtcatctaccctgaggtgtcag
aggaacctaaggaggaacagaaaggcctgtcctcagggcccgctggcgaa
ggcgagggtggagcgggcagtgagaagcccactgtactgaagctgtctcg
gaaagggggccttcgggggctggtggagacggagtccatggtgtgagccc
ccgctggtacattccacactggagggcagggcgcactgggggctaggctt
gcccataccatgcgagctggagttccttcccagagcacagtccaagttca
gtaggtgttaggtgtagggtaggtttgagctattagacaaaaatatcaca
ctaatttacctttcccacgattaaaaaaaaatcatttgaaatcttttttt
attgaaaaagaacttaatttcagctgtcttttattctgcaggtatatcat
tctgcatgttttaaattgtgaaatattcacagcatagtcaataagcaatt
tagaaaacataagggtctgcatttctaaaccagtaattggaagtgcagaa
actgactcccttggcagatatcatctgaaaggcagcagacagcagcgtag
ttttccagattgcccagcaggtgtctgttggagacacctttcagcatcag
tctggtattgcagcgccttcagagtatttttctgtttattttagaaaaca
gtatttttcttttttcacaaactgtggttttcttagaagaatcatcatct
cttggccgaggtatagcctcgcaaatcctggtgcactaggctgaaaccat
cacaccaaaagcttggggtaaatggtccccagaagtgttagaagcataat
gtagtcatttcctccgagggcagccttccaga
actgtcacacttgtggtgtgtgacagatataaggcaagggttggaaggac
tggaaattgccagcaggtgctgctggactgtactccaggactgtacctgt
gagtaacaggcttctgactgttgtttggtcagttgttcattgttcatcac
cacgataaatacctgggaagatcagcttcaaggagaaagatctcttttgg
ctcatagttttggaagtttccatctaaggtcactcagtcctgtcacttag
ggctgtgaagaagcagacacatcatgatggaagatacagcagaggaaaga
tgttcattccatgacagtcagggagagagggaggaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73411537_73412540
seq2: B6Ng01-275N19.b_50_1081 (reverse)

seq1  TCTGG-AGGCTGCCCT---GGGGAATGGCTGCCTTCTGC-TCAAACACCT  45
      ||||| ||||||||||    || |||| || | || ||| || ||||| |
seq2  TCTGGAAGGCTGCCCTCGGAGGAAATGACTACATTATGCTTCTAACACTT  50

seq1  CT-GGGACCTTT---CCCCAGC-TTTGGTGTG-TGGTCTCAGC--TGTGC  87
      || |||||| ||   ||| ||| ||||||||| |||| |||||   ||||
seq2  CTGGGGACCATTTACCCCAAGCTTTTGGTGTGATGGTTTCAGCCTAGTGC  100

seq1  A-CAGGA-TTGCGAGCC--TAACTCG--CCAGAGATGATG-TTCTTCTAA  130
      | ||||| ||||||| |  || ||||  | |||||||||| |||||||||
seq2  ACCAGGATTTGCGAGGCTATACCTCGGCCAAGAGATGATGATTCTTCTAA  150

seq1  GAAAACCACAG-TTGTGAAAAA--GAAAATACTG-TTTCTAAAATAAACA  176
      ||||||||||| ||||||||||   ||||||||| |||||||||||||||
seq2  GAAAACCACAGTTTGTGAAAAAAGAAAAATACTGTTTTCTAAAATAAACA  200

seq1  GAAAAATACTCTG-AGGCGCTGCAATACCAGACTGATGCTG-AAGGTGTC  224
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  GAAAAATACTCTGAAGGCGCTGCAATACCAGACTGATGCTGAAAGGTGTC  250

seq1  TCCAACAGACACCTGCTGGGCAATCTGG-AAACTACGCTGCTGTCTGCTG  273
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCAACAGACACCTGCTGGGCAATCTGGAAAACTACGCTGCTGTCTGCTG  300

seq1  CC-TTCAGATGATATCTGCCAAGGGAGTCAGTTTCTGCACTTCCAATTAC  322
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGATGATATCTGCCAAGGGAGTCAGTTTCTGCACTTCCAATTAC  350

seq1  TGGTTTAGAAATGCAGACCCTTATGTTTTCTAAATTGCTTATTGACTATG  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGAAATGCAGACCCTTATGTTTTCTAAATTGCTTATTGACTATG  400

seq1  CTGTGAATATTTCACAATTTAAAACATGCAGAATGATATACCTGCAGAAT  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATATTTCACAATTTAAAACATGCAGAATGATATACCTGCAGAAT  450

seq1  AAAAGACAGCTGAAATTAAGTTCTTTTTCAATAAAAAAAGATTTCAAATG  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGCTGAAATTAAGTTCTTTTTCAATAAAAAAAGATTTCAAATG  500

seq1  ATTTTTTTTTAATCGTGGGAAAGGTAAATTAGTGTGATATTTTTGTCTAA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAATCGTGGGAAAGGTAAATTAGTGTGATATTTTTGTCTAA  550

seq1  TAGCTCAAACCTACCCTACACCTAACACCTACTGAACTTGGACTGTGCTC  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAAACCTACCCTACACCTAACACCTACTGAACTTGGACTGTGCTC  600

seq1  TGGGAAGGAACTCCAGCTCGCATGGTATGGGCAAGCCTAGCCCCCAGTGC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGAACTCCAGCTCGCATGGTATGGGCAAGCCTAGCCCCCAGTGC  650

seq1  GCCCTGCCCTCCAGTGTGGAATGTACCAGCGGGGGCTCACACCATGGACT  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCCTCCAGTGTGGAATGTACCAGCGGGGGCTCACACCATGGACT  700

seq1  CCGTCTCCACCAGCCCCCGAAGGCCCCCTTTCCGAGACAGCTTCAGTACA  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTCCACCAGCCCCCGAAGGCCCCCTTTCCGAGACAGCTTCAGTACA  750

seq1  GTGGGCTTCTCACTGCCCGCTCCACCCTCGCCTTCGCCAGCGGGCCCTGA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTCTCACTGCCCGCTCCACCCTCGCCTTCGCCAGCGGGCCCTGA  800

seq1  GGACAGGCCTTTCTGTTCCTCCTTAGGTTCCTCTGACACCTCAGGGTAGA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCCTTTCTGTTCCTCCTTAGGTTCCTCTGACACCTCAGGGTAGA  850

seq1  TGACCAGGAATGTGGCTGTCAAGAAGCCCAGGAAAGAGCCTACAGAGGCC  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGAATGTGGCTGTCAAGAAGCCCAGGAAAGAGCCTACAGAGGCC  900

seq1  ACTATGGGGATGACAACGATACTATTCACAGCGTCGACCACGCCCCCAAG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGGGATGACAACGATACTATTCACAGCGTCGACCACGCCCCCAAG  950

seq1  GGCAGATGCAACCAGGATCTGGGAGATGTAGACCTGACAGGAGAGGATGG  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGCAACCAGGATCTGGGAGATGTAGACCTGACAGGAGAGGATGG  1000

seq1  CGCAGTCAATGCCAAATCCACGCTTGGAATTC  1004
      ||||||||||||||||||||||||||||||||
seq2  CGCAGTCAATGCCAAATCCACGCTTGGAATTC  1032

seq1: chr15_73266273_73266612
seq2: B6Ng01-275N19.g_72_411

seq1  ACTGTCACACTTGTGGTGTGTGACAGATATAAGGCAAGGGTTGGAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACACTTGTGGTGTGTGACAGATATAAGGCAAGGGTTGGAAGGAC  50

seq1  TGGAAATTGCCAGCAGGTGCTGCTGGACTGTACTCCAGGACTGTACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTGCCAGCAGGTGCTGCTGGACTGTACTCCAGGACTGTACCTGT  100

seq1  GAGTAACAGGCTTCTGACTGTTGTTTGGTCAGTTGTTCATTGTTCATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACAGGCTTCTGACTGTTGTTTGGTCAGTTGTTCATTGTTCATCAC  150

seq1  CACGATAAATACCTGGGAAGATCAGCTTCAAGGAGAAAGATCTCTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATAAATACCTGGGAAGATCAGCTTCAAGGAGAAAGATCTCTTTTGG  200

seq1  CTCATAGTTTTGGAAGTTTCCATCTAAGGTCACTCAGTCCTGTCACTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTTTTGGAAGTTTCCATCTAAGGTCACTCAGTCCTGTCACTTAG  250

seq1  GGCTGTGAAGAAGCAGACACATCATGATGGAAGATACAGCAGAGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAAGAAGCAGACACATCATGATGGAAGATACAGCAGAGGAAAGA  300

seq1  TGTTCATTCCATGACAGTCAGGGAGAGAGGGAGGAGGAAG  340
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTCCATGACAGTCAGGGAGAGAGGGAGGAGGAAG  340