BAC Information

Click to search

BAC

Clone NameB6Ng01-276B19
Chromosome15 (Build37)
Map Location 61,658,130 - 61,789,981
singlet/doubletdoublet
Overlap genenone
Upstream gene9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3, LOC100040430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276B19.bB6Ng01-276B19.g
ACCGA076972GA076973
length1,0851,097
definitionB6Ng01-276B19.b B6Ng01-276B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,788,911 - 61,789,981)(61,658,130 - 61,659,225)
sequence
gaattctatcagacctccaaagaagacccaatatcaatactcttcaaact
attccacaaaatagaaacagaaggagcacttcccaattcattctatgaag
ccacaattatactgatacctaaaccacacaaagacccaacaaagaaagag
aacttcagaccaatttcccttatgaatatagatgcaaaaatactcaataa
aattctcgcaaaccgaatgcaagaactcaattatccatcatgatcaagta
ggcttcattccagggatgcagggatggttcaatatacagaaatccatcaa
cgtaatccactatataaacaaactcaaagacaaaaaccacatgatcatct
cattagatgctgagaaaacatttgacaaaatccaacaccccttttttggt
aaaagtcttgaaaatatcaagaattcaaggcccatacctaaacatagtaa
aagcaatgtacagcaaaccagcaactaacatcaaactaaatggagagaaa
cttgaagcaatcccactaaaatcagatgcatgttattacaccaatttttt
tttttatgggaatttccaggatgagactcagagtctcaggtctgtgtggc
tggctagaacttttaaccttctgaggcatctttctggtcctgaatataca
cacacacacacacacacacacacacacacacacacacacacacacacaca
tgcacttgcacacatttaataagaaataactagaattttcataaacacaa
gctcatttaaaaacaatgtcaaatagatggcattttctttggggaaaagg
cagacattttgtttgatgtttttccttttgtatccagcatcttaggatta
gttgatgattattgcaagatgagatcacacactattgccttaagcacatc
atctctccttaatttgtgttgaatatgtttgtacaacctaaaaatgggat
gctgacctcaataaagttgctcttttccttccctttgcccacatggagat
tattgttattgttatatattatatattatattattattacttatttaaaa
cagttcatcactattttttcttttcttatttttta

gaattccaatttctcaaaaagaaaattgaagtgttacatacaaataggtt
ggattgcacaccaagcagaccctccttgcagagtgagaagagcaaagcac
cattccatccaaactgagagagactctggctttctatgacatgcttaaaa
atattggcagagagcagacaactggtagcttaacttactggtgaggagtg
gcataaaattccaggatattaaagacaatgtggataaagaaagtaaaaga
ttagaaacatgttgatttcttaatagtgaaaagggagggccaataaatag
gtagcctttctttgtttactgttatgtttttaggtcttcttccccttcct
ttcctaggttctgcaaagcagatagtcatatattctggaactggagactc
tatatcagagttctgagacaggtctatagttctctgctttttcccttatg
gaaattgaattgttccctcccctacccccacatctggtaatgtctccagg
tcttctttcagagttgtacccattctgtgttgagagtgtttttgtgtaac
ttcaggagggagtgaaatcttcatgtaactggatatgactgctcattgta
aataagccatgcatagtcattcactgaatgatgtgctatgtaagctgcac
atgtgctacatcaatgacttggacatgataaagcaagaaagttgggctag
aggtgtatactatatgcagcatgtgtgtgttgaagttttaacacaccaca
gtatgaagaaaaatagaaagagaaaaaaaacaataaaacagaaaaacaaa
aaacaaaaatggcaaaagaatgcagtagagagagtcaggcataggaaatg
aaatatattgcaagattagaaagggcatggcccaatggataatataaggt
ttaactcaagcttgaaagagaaggcattaggctgtgcagttatgggacca
tccaaaggcagagaaaaacagtcagcagaaaactcataagctagggcata
ttaagacgtcacacagctggagcagatggacaggtgggaaacagggtaca
cctgtcacttcattctatttttttaataagacaaggcaaggctgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61788911_61789981
seq2: B6Ng01-276B19.b_73_1129 (reverse)

seq1  TAAAAAATAAAAGAAAAAGAAAAAATAGTTGATGAACTGTTTTTAAAATA  50
      ||||||||||    |||||||||||||| ||||||||||||||  |||||
seq2  TAAAAAATAA---GAAAAGAAAAAATAG-TGATGAACTGTTTT--AAATA  44

seq1  AGTTAATAATAATAATAATAATAATAATAATAATAATAACAATAACAATA  100
      ||    |||||||||| ||||||   ||||||   |||||||||||||||
seq2  AG----TAATAATAAT-ATAATA--TATAATA--TATAACAATAACAATA  85

seq1  ATCTCCATGTGGGGCAAAGGGAAGG-AAAGAGCAACTTTATTGAGGTCAG  149
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  ATCTCCATGT-GGGCAAAGGGAAGGAAAAGAGCAACTTTATTGAGGTCAG  134

seq1  CAT-CCATTTTTAGGTTGTACAAACATATTCAACACAAATTAAGGAGAGA  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATTTTTAGGTTGTACAAACATATTCAACACAAATTAAGGAGAGA  184

seq1  TGATGTGCTTAAGGCAATAGTGTGTGATCTCATCTTGCAATAATCATCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCTTAAGGCAATAGTGTGTGATCTCATCTTGCAATAATCATCAA  234

seq1  CTAATCCTAAGATGCTGGATACAAAAGGAAAAACATCAAACAAAATGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTAAGATGCTGGATACAAAAGGAAAAACATCAAACAAAATGTCT  284

seq1  GCCTTTTCCCCAAAGAAAATGCCATCTATTTGACATTGTTTTTAAATGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCCCAAAGAAAATGCCATCTATTTGACATTGTTTTTAAATGAG  334

seq1  CTTGTGTTTATGAAAATTCTAGTTATTTCTTATTAAATGTGTGCAAGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTTATGAAAATTCTAGTTATTTCTTATTAAATGTGTGCAAGTGC  384

seq1  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  434

seq1  GTGTATATTCAGGACCAGAAAGATGCCTCAGAAGGTTAAAAGTTCTAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATTCAGGACCAGAAAGATGCCTCAGAAGGTTAAAAGTTCTAGCC  484

seq1  AGCCACACAGACCTGAGACTCTGAGTCTCATCCTGGAAATTCCCATAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACAGACCTGAGACTCTGAGTCTCATCCTGGAAATTCCCATAAAA  534

seq1  AAAAAAATTGGTGTAATAACATGCATCTGATTTTAGTGGGATTGCTTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGGTGTAATAACATGCATCTGATTTTAGTGGGATTGCTTCAA  584

seq1  GTTTCTCTCCATTTAGTTTGATGTTAGTTGCTGGTTTGCTGTACATTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCCATTTAGTTTGATGTTAGTTGCTGGTTTGCTGTACATTGCT  634

seq1  TTTACTATGTTTAGGTATGGGCCTTGAATTCTTGATATTTTCAAGACTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATGTTTAGGTATGGGCCTTGAATTCTTGATATTTTCAAGACTTT  684

seq1  TACCAAAAAAGGGGTGTTGGATTTTGTCAAATGTTTTCTCAGCATCTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAAAGGGGTGTTGGATTTTGTCAAATGTTTTCTCAGCATCTAAT  734

seq1  GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTAC  784

seq1  GTTGATGGATTTCTGTATATTGAACCATCCCTGCATCCCTGGAATGAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGATTTCTGTATATTGAACCATCCCTGCATCCCTGGAATGAAGC  834

seq1  CTACTTGATCATGATGGATAATTGAGTTCTTGCATTCGGTTTGCGAGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGATCATGATGGATAATTGAGTTCTTGCATTCGGTTTGCGAGAAT  884

seq1  TTTATTGAGTATTTTTGCATCTATATTCATAAGGGAAATTGGTCTGAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGTATTTTTGCATCTATATTCATAAGGGAAATTGGTCTGAAGT  934

seq1  TCTCTTTCTTTGTTGGGTCTTTGTGTGGTTTAGGTATCAGTATAATTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTGTTGGGTCTTTGTGTGGTTTAGGTATCAGTATAATTGTG  984

seq1  GCTTCATAGAATGAATTGGGAAGTGCTCCTTCTGTTTCTATTTTGTGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGAATGAATTGGGAAGTGCTCCTTCTGTTTCTATTTTGTGGAA  1034

seq1  TAGTTTGAAGAGTATTGATATTG  1071
      |||||||||||||||||||||||
seq2  TAGTTTGAAGAGTATTGATATTG  1057


seq1: chr15_61658130_61659225
seq2: B6Ng01-276B19.g_64_1160

seq1  GAATTCCAATTTCTCAAAAAGAAAATTGAAGTGTTACATACAAATAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTCTCAAAAAGAAAATTGAAGTGTTACATACAAATAGGTT  50

seq1  GGATTGCACACCAAGCAGACCCTCCTTGCAGAGTGAGAAGAGCAAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCACACCAAGCAGACCCTCCTTGCAGAGTGAGAAGAGCAAAGCAC  100

seq1  CATTCCATCCAAACTGAGAGAGACTCTGGCTTTCTATGACATGCTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATCCAAACTGAGAGAGACTCTGGCTTTCTATGACATGCTTAAAA  150

seq1  ATATTGGCAGAGAGCAGACAACTGGTAGCTTAACTTACTGGTGAGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCAGAGAGCAGACAACTGGTAGCTTAACTTACTGGTGAGGAGTG  200

seq1  GCATAAAATTCCAGGATATTAAAGACAATGTGGATAAAGAAAGTAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATTCCAGGATATTAAAGACAATGTGGATAAAGAAAGTAAAAGA  250

seq1  TTAGAAACATGTTGATTTCTTAATAGTGAAAAGGGAGGGCCAATAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACATGTTGATTTCTTAATAGTGAAAAGGGAGGGCCAATAAATAG  300

seq1  GTAGCCTTTCTTTGTTTACTGTTATGTTTTTAGGTCTTCTTCCCCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTTTCTTTGTTTACTGTTATGTTTTTAGGTCTTCTTCCCCTTCCT  350

seq1  TTCCTAGGTTCTGCAAAGCAGATAGTCATATATTCTGGAACTGGAGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGTTCTGCAAAGCAGATAGTCATATATTCTGGAACTGGAGACTC  400

seq1  TATATCAGAGTTCTGAGACAGGTCTATAGTTCTCTGCTTTTTCCCTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGAGTTCTGAGACAGGTCTATAGTTCTCTGCTTTTTCCCTTATG  450

seq1  GAAATTGAATTGTTCCCTCCCCTACCCCCACATCTGGTAATGTCTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAATTGTTCCCTCCCCTACCCCCACATCTGGTAATGTCTCCAGG  500

seq1  TCTTCTTTCAGAGTTGTACCCATTCTGTGTTGAGAGTGTTTTTGTGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCAGAGTTGTACCCATTCTGTGTTGAGAGTGTTTTTGTGTAAC  550

seq1  TTCAGGAGGGAGTGAAATCTTCATGTAACTGGATATGACTGCTCATTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGGGAGTGAAATCTTCATGTAACTGGATATGACTGCTCATTGTA  600

seq1  AATAAGCCATGCATAGTCATTCACTGAATGATGTGCTATGTAAGCTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCATGCATAGTCATTCACTGAATGATGTGCTATGTAAGCTGCAC  650

seq1  ATGTGCTACATCAATGACTTGGACATGATAAAGCAAGAAAGTTGGGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTACATCAATGACTTGGACATGATAAAGCAAGAAAGTTGGGCTAG  700

seq1  AGGTGTATACTATATGCAGCATGTGTGTGTTGAAGTTTTAACACACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATACTATATGCAGCATGTGTGTGTTGAAGTTTTAACACACCACA  750

seq1  GTATGAAGAAAAATAGAAAGAGAAAAAAAACAATAAAACAGAAAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGAAAAATAGAAAGAGAAAAAAAACAATAAAACAGAAAAACAAA  800

seq1  AAACAAAAATGGCAAAAGAATGCAGTAGAGAGAGTCAGGCATAGGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATGGCAAAAGAATGCAGTAGAGAGAGTCAGGCATAGGAAATG  850

seq1  AAATATATTGCAAGATTAGAAGGGGCATGG-CCAATGGATAATATAAGGT  899
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AAATATATTGCAAGATTAGAAAGGGCATGGCCCAATGGATAATATAAGGT  900

seq1  TTAACTCAAGCTTGAAAGAGAAGGCATTA-GCTGTGCAGTTATGGGACCA  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAACTCAAGCTTGAAAGAGAAGGCATTAGGCTGTGCAGTTATGGGACCA  950

seq1  TCC-AAGGCAGAG-AAAACAGTCAGCAGAAAACCCATAAGCTAGGGCATA  996
      ||| ||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TCCAAAGGCAGAGAAAAACAGTCAGCAGAAAACTCATAAGCTAGGGCATA  1000

seq1  TTAAGAAGGTCACACAGCTGGAGCAGATGGACAAGGTGGGAAACAGGGGT  1046
      ||||| | |||||||||||||||||||||||| |||||||||||||||  
seq2  TTAAG-ACGTCACACAGCTGGAGCAGATGGAC-AGGTGGGAAACAGGG--  1046

seq1  TACACCTGTCACTTTCCATTCTATTTTT---ATAAGAC-AGGCAAGGGCT  1092
      ||||||||||||||  ||||||||||||   ||||||| |||||| ||||
seq2  TACACCTGTCACTT--CATTCTATTTTTTTAATAAGACAAGGCAA-GGCT  1093

seq1  GATG  1096
      ||||
seq2  GATG  1097


| Home | SequenceCutter | Blast | Download |