BAC Information

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BAC

Clone NameB6Ng01-276P20
Chromosome15 (Build37)
Map Location 20,354,495 - 20,547,686
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P20.bB6Ng01-276P20.g
ACCGA077627GA077628
length1,1491,111
definitionB6Ng01-276P20.b B6Ng01-276P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,354,495 - 20,355,656)(20,547,156 - 20,547,686)
sequence
gtgttcctcatattttccttctatactaggagagtttgtgtactcatgga
catggcacaagtcacccaatcttttccccatccccactttctttgtccct
ctccctcttgatctctttctccctccttccctccctctgtgtccctctcc
ctcttcccctccctccatcccctgcccctctctatttctttgataaactc
tcatgtaattcttcagctcttttagctcaaagtgtagatgggcctgtctt
cctattccctccacccatcaaatcctagaattacaggtgcgcaccaacca
tgcctgaatttctaccatttaaaatcaaagttgtttaaaaaacaaaatac
atataagcacacatgtatatatgtataggaatccatgtttataattttaa
aaagaggtactaaatataatgtataatatagacttctgctcaccctgtga
agtcaattcaccattcttaaaacccttctaaaattcttctatacctttga
aagtttatgtctatctttttcttccattaaccttggattcatattaaaga
ataaaaagaaaataaaaataaggtatcaatttgttgtataaagttaatat
atgtataccatccatttaaaacagataatgcttaagataattaataattt
gttaatattatattaatattatagcccacttgaaatatatatagatatta
aaacaaaaatatatttcttatatgagttacagaaagatttaagttgcacc
ctgaatgagttaagaatgtgaattcatattagaaattaaaattattgaga
actcagtatataatattttaaagatcacattgaaaataatgtggttaaat
tattctcaaattaaacttttatagttatgtgttagactctactgaataga
ctgtgatttttcaaagcaatgactcttatttccagtgtataattttaaaa
ttattacaataatcatacagaataaatattaggaatgtagaactcctaga
atttggatgagagtaattacagaatcatttgaggaagattaaatgtggag
tcagattaaatacagtaaaaaggctgaaagctgagaaactcagccaataa
ggcaaaagaattgttatgaagtaaacttttctaaaaggttttggagcta
gaattcagataacacttggggtatctctaaccaatcaagtgagagacttg
ttgtattcttcaacttcaagtcattgaagaatgaaattaagagatatcag
aaaatggaaaggtctcccatgttctcttggttgaattaacagtaaatatg
gctatgctattgaaagcaacagattaaattctatcctcatcaaaatttca
aaacaattcttcaaagatcttgaaataagttcaacttcatttggacacac
aaacacacacacacacacaaatatcaagagagcaaaattatccttactaa
tgaaagaactgctgtaggtatccctatccatcaaattgtcctaccaaggt
acagtaagaaggaatagtattgttttggcacacacacacacacacacaca
cacacacacacagacacacacacacacacacattggaggggagaaaacag
agagagacagacagtgacatgttgatcaatggaatcaaagtgaagaccca
gattagaatccacacaacctacaaatacttaatttttgattaaagaaaaa
agccagaaatatacactggaaaaaaaactacagcattcaaaaagttttgt
tcaaactggacgactgcatatagaagaatccaagtagatctctatctata
cttattaccctgcacaaaattcaactccaacaggatccaagatatcaaga
taaaaccagatacaatgagcctaatagaagagaaagtgtcaaatagcttt
gatgtccctggaaaagaagactttctgaagagagcatggacagtcaggtc
aacaattaggaagtgtggactcatgaagtttaaagcttctgtattgcaaa
agataccatcattcagagaacataattcttgtgttaataggtattttctt
cacacatgatagaaagcattttcctacagatatgtgaaatatattgttca
atgttattcatagtaatgaatgtttttgagcagccatgatatacctatca
cattatatatcatttcacattcttatcatttagcctatgttcagaatctg
agaaaaatcaagtatattctgtttcatttagagcagtattaaaaaaaaag
acctttgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20354495_20355656
seq2: B6Ng01-276P20.b_53_1201

seq1  GTGTTCCTCATATTTTCCTTCTATACTAGGAGAGTTTGTGTACTCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTCATATTTTCCTTCTATACTAGGAGAGTTTGTGTACTCATGGA  50

seq1  CATGGCACAAGTCACCCAATCTTTTCCCCATCCCCACTTTCTTTGTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACAAGTCACCCAATCTTTTCCCCATCCCCACTTTCTTTGTCCCT  100

seq1  CTCCCTCTTGATCTCTTTCTCCCTCCTTCCCTCCCTCTGTGTCCCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTGATCTCTTTCTCCCTCCTTCCCTCCCTCTGTGTCCCTCTCC  150

seq1  CTCTTCCCCTCCCTCCATCCCCTGCCCCTCTCTATTTCTTTGATAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCCTCCCTCCATCCCCTGCCCCTCTCTATTTCTTTGATAAACTC  200

seq1  TCATGTAATTCTTCAGCTCTTTTAGCTCAAAGTGTAGATGGGCCTGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAATTCTTCAGCTCTTTTAGCTCAAAGTGTAGATGGGCCTGTCTT  250

seq1  CCTATTCCCTCCACCCATCAAATCCTAGAATTACAGGTGCGCACCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCCTCCACCCATCAAATCCTAGAATTACAGGTGCGCACCAACCA  300

seq1  TGCCTGAATTTCTACCATTTAAAATCAAAGTTGTTTAAAAAACAAAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAATTTCTACCATTTAAAATCAAAGTTGTTTAAAAAACAAAATAC  350

seq1  ATATAAGCACACATGTATATATGTATAGGAATCCATGTTTATAATTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCACACATGTATATATGTATAGGAATCCATGTTTATAATTTTAA  400

seq1  AAAGAGGTACTAAATATAATGTATAATATAGACTTCTGCTCACCCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTACTAAATATAATGTATAATATAGACTTCTGCTCACCCTGTGA  450

seq1  AGTCAATTCACCATTCTTAAAACCCTTCTAAAATTCTTCTATACCTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTCACCATTCTTAAAACCCTTCTAAAATTCTTCTATACCTTTGA  500

seq1  AAGTTTATGTCTATCTTTTTCTTCCATTAACCTTGGATTCATATTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGTCTATCTTTTTCTTCCATTAACCTTGGATTCATATTAAAGA  550

seq1  ATAAAAAGAAAATAAAAATAAGGTATCAATTTGTTGTATAAAGTTAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAAAATAAAAATAAGGTATCAATTTGTTGTATAAAGTTAATAT  600

seq1  ATGTATACCATCCATTTAAAACAGATAATGCTTAAGATAATTAATAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACCATCCATTTAAAACAGATAATGCTTAAGATAATTAATAATTT  650

seq1  GTTAATATTATATTAATATTATAGCCCACTTGAAATATATATAGATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTATATTAATATTATAGCCCACTTGAAATATATATAGATATTA  700

seq1  AAACAAAAATATATTTCTTATATGAGTTACAGAAAGATTTAAGTTGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATATATTTCTTATATGAGTTACAGAAAGATTTAAGTTGCACC  750

seq1  CTGAATGAGTTAAGAATGTGAATTCATATTAGAAATTAAAATTATTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAGTTAAGAATGTGAATTCATATTAGAAATTAAAATTATTGAGA  800

seq1  ACTCAGGTATATAATATTTTAAAGATCACATTGAAAATAATGTGGTTAAA  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCA-GTATATAATATTTTAAAGATCACATTGAAAATAATGTGGTTAAA  849

seq1  TTATTCTCAAATTAAACTTTTATAGTTATGTGTTAGACTCTACTGAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCAAATTAAACTTTTATAGTTATGTGTTAGACTCTACTGAATAG  899

seq1  ACTGTGATTTTTCAAAGCAATGACTCTTATTTCCAGTGTATAA-TTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTGTGATTTTTCAAAGCAATGACTCTTATTTCCAGTGTATAATTTTAAA  949

seq1  ATTATTACAATAATCATACAAGAAATAAAATATTAGGAATGTAGAACTCC  999
      ||||||||||||||||||| ||||   |||||||||||||||||||||||
seq2  ATTATTACAATAATCATAC-AGAA--TAAATATTAGGAATGTAGAACTCC  996

seq1  TAGAATTTGGATGAGAGGTAAATTACAGAATCATTTGAGAAAAGATTAAA  1049
      |||||||||||||||||   |||||||||||||||||||  |||||||||
seq2  TAGAATTTGGATGAGAG--TAATTACAGAATCATTTGAG-GAAGATTAAA  1043

seq1  TGTGGAGTCAGGATTAAATACATTAAAAAGCTTGAAAAGCTGAAGAAACT  1099
      |||||||||| ||||||||||| |||||||  || ||||||| |||||||
seq2  TGTGGAGTCA-GATTAAATACAGTAAAAAGGCTG-AAAGCTG-AGAAACT  1090

seq1  CAGGGCAAATTAAAGGGAAAAGAATTGTTATGAAGTTAAATTTTTCTAAA  1149
      ||  || |||  |||| |||||||||||||||||| |||| |||||||||
seq2  CA--GCCAAT--AAGGCAAAAGAATTGTTATGAAG-TAAACTTTTCTAAA  1135

seq1  AAGTTTT-GAGCTA  1162
      | ||||| ||||||
seq2  AGGTTTTGGAGCTA  1149

seq1: chr15_20547156_20547686
seq2: B6Ng01-276P20.g_656_1175 (reverse)

seq1  GCTACAAAGTCTTTTTTTTTTAATACTGCTCTTAAATGAAAACAGGAATA  50
      |||||||||   ||||||||||||||||||| |||||| ||||| |||||
seq2  GCTACAAAGGTCTTTTTTTTTAATACTGCTC-TAAATG-AAACA-GAATA  47

seq1  TACTATGATTTTTCTCAAGATTCTGGAACATAGGCCTAAATGATAAGAAT  100
      |||| ||||||||||| ||||||| ||||||||| |||||||||||||||
seq2  TACT-TGATTTTTCTC-AGATTCT-GAACATAGG-CTAAATGATAAGAAT  93

seq1  GTGAAATTGATATATATTGTTGATAGGTAATATCATGGCTGCTC-AAAAC  149
      |||||| ||||||||| || |||||||| ||||||||||||||| |||||
seq2  GTGAAA-TGATATATAATG-TGATAGGT-ATATCATGGCTGCTCAAAAAC  140

seq1  ATTCATTAACTATGAATAACATTGAACAATTATATTTCACATATCTGTAG  199
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTCATT-ACTATGAATAACATTGAACAA-TATATTTCACATATCTGTAG  188

seq1  GAAAATGCTTTCTATCATGTGTGAAGAAAATACCTATTAACACAAGAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCTTTCTATCATGTGTGAAGAAAATACCTATTAACACAAGAATT  238

seq1  ATGTTCTCTGAATGATGGTATCTTTTGCAATACAGAAGCTTTAAACTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTGAATGATGGTATCTTTTGCAATACAGAAGCTTTAAACTTCA  288

seq1  TGAGTCCACACTTCCTAATTGTTGACCTGACTGTCCATGCTCTCTTCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCACACTTCCTAATTGTTGACCTGACTGTCCATGCTCTCTTCAGA  338

seq1  AAGTCTTCTTTTCCAGGGACATCAAAGCTATTTGACACTTTCTCTTCTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCTTTTCCAGGGACATCAAAGCTATTTGACACTTTCTCTTCTAT  388

seq1  TAGGCTCATTGTATCTGGTTTTATCTTGATATCTTGGATCCTGTTGGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCATTGTATCTGGTTTTATCTTGATATCTTGGATCCTGTTGGAGT  438

seq1  TGAATTTTGTGCAGGGTAATAAGTATAGATAGAGATCTACTTGGATTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGTGCAGGGTAATAAGTATAGATAGAGATCTACTTGGATTCTT  488

seq1  CTATATGCAGTCGTCCAGTTTGAACAAAACTT  531
      ||||||||||||||||||||||||||||||||
seq2  CTATATGCAGTCGTCCAGTTTGAACAAAACTT  520