BAC Information

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BAC

Clone NameB6Ng01-277E16
Chromosome15 (Build37)
Map Location 21,218,023 - 21,219,155
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E16.bB6Ng01-277E16.g
ACCGA077850GA077851
length1,2171,122
definitionB6Ng01-277E16.b B6Ng01-277E16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccacctccttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaatgatcctttcccagtctgttggtggtct
ttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgttaattctcgatcttgcagtacaagccattgctgtt
ctgttcaggaatttttcccctgtggccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttatttcagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttaatcctgccaatccatgagcatgggagatctttccatctt
ctgagatctttccttaattttctttcttcagagatttgaagtttttattt
atacagatcttttcactttcctttagttagagtcacgccaagatatttta
tattatttgtgactattgggaagggtgttgtttccctaatttctttctca
ggcctgttttattcttttgtatagaagaaaggccatttgactttgtttga
gtttattttatatcaggctacttcaccgaagctgttttattcaggtttag
gagttcctcctggtagaacttttaagtcactatataattacctatcctaa
ttcatctggcaaaagggatattttgaccctcctctctttctcccagattg
tggatatccccccatga

gaattcttctctggtgatgtttaaacgcaacccacaaaacagtacataat
agtgtggataaaatattgttacagagatgagtctgaggtctgtagaaaaa
agcagagcaaaatacttgaggccagattacctgtttaaaactcatattgg
gctctgcctaaatgagaagccagaagcaacaggtgttatagctctatcca
ggtaacacatctcttcattcaccacttctagctgcagagatagacagttg
actgctaccctttttatatttaatttaaataaaataatgtggcttaccac
attctctttcttcctatactacctactaagacccatctcatttcctcaca
aactgatgccctcttttccttttattaatattgttatttatggtagtcta
cttgttgttgctcacgtggatatgacctcaaggctgaccactttatttca
gataatgaattgggacacacaatctctaggagaggtggattgtgcctctc
tcagcagcacttggttgacagtagctctttgtgtagctattgaacctgag
gagatttgagcccctacacattagtgtgtagtgatattgttatcgataag
atctagatatcaacacttgatctagtctcaaaaatattggaacaattcca
gaaactcctgattcaatgacttcagagttctatttttggcaccgagcttc
agggtcaagatggaggtggagaaacaagagtcagaagaacagaggcggct
gaaaggaataggggtcaagggtcaaaagagaggctttgcttagtggatgg
tgtggcaaaacagacttgggccactcttgtcagattatgtttgtaatggt
gtgatacagagttgggctagaagactaaagggattccttgaacagagtcg
aaggatgattgttaaaggatgatgatgcattttgtttttcctttagtgga
aacagatgtagaatggtactgaagcagcctagcataaatatataaaagag
taatatgtgtttgactatgattcatatctatagtgaatgatgttcttagt
tatgggaatgttatgatgcatgtcataatcaattctctgcagctgaaagg
ttttactcttaggaaagcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21218023_21219155
seq2: B6Ng01-277E16.g_66_1187

seq1  GAATTCTTCTCTGGTGATGTTTAAACGCAACCCACAAAACAGTACATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTGGTGATGTTTAAACGCAACCCACAAAACAGTACATAAT  50

seq1  AGTGTGGATAAAATATTGTTACAGAGATGAGTCTGAGGTCTGTAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGATAAAATATTGTTACAGAGATGAGTCTGAGGTCTGTAGAAAAA  100

seq1  AGCAGAGCAAAATACTTGAGGCCAGATTACCTGTTTAAAACTCATATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCAAAATACTTGAGGCCAGATTACCTGTTTAAAACTCATATTGG  150

seq1  GCTCTGCCTAAATGAGAAGCCAGAAGCAACAGGTGTTATAGCTCTATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTAAATGAGAAGCCAGAAGCAACAGGTGTTATAGCTCTATCCA  200

seq1  GGTAACACATCTCTTCATTCACCACTTCTAGCTGCAGAGATAGACAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACATCTCTTCATTCACCACTTCTAGCTGCAGAGATAGACAGTTG  250

seq1  ACTGCTACCCTTTTTATATTTAATTTAAATAAAATAATGTGGCTTACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACCCTTTTTATATTTAATTTAAATAAAATAATGTGGCTTACCAC  300

seq1  ATTCTCTTTCTTCCTATACTACCTACTAAGACCCATCTCATTTCCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTCTTCCTATACTACCTACTAAGACCCATCTCATTTCCTCACA  350

seq1  AACTGATGCCCTCTTTTCCTTTTATTAATATTGTTATTTATGGTAGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGCCCTCTTTTCCTTTTATTAATATTGTTATTTATGGTAGTCTA  400

seq1  CTTGTTGTTGCTCACGTGGATATGACCTCAAGGCTGACCACTTTATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTGCTCACGTGGATATGACCTCAAGGCTGACCACTTTATTTCA  450

seq1  GATAATGAATTGGGACACACAATCTCTAGGAGAGGTGGATTGTGCCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAATTGGGACACACAATCTCTAGGAGAGGTGGATTGTGCCTCTC  500

seq1  TCAGCAGCACTTGGTTGACAGTAGCTCTTTGTGTAGCTATTGAACCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCACTTGGTTGACAGTAGCTCTTTGTGTAGCTATTGAACCTGAG  550

seq1  GAGATTTGAGCCCCTACACATTAGTGTGTAGTGATATTGTTATCGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGAGCCCCTACACATTAGTGTGTAGTGATATTGTTATCGATAAG  600

seq1  ATCTAGATATCAACACTTGATCTAGTCTCAAAAATATTGGAACAATTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATATCAACACTTGATCTAGTCTCAAAAATATTGGAACAATTCCA  650

seq1  GAAACTCCTGATTCAATGACTTCAGAGTTCTATTTTTGGCACCGAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCTGATTCAATGACTTCAGAGTTCTATTTTTGGCACCGAGCTTC  700

seq1  AGGGTCAAGATGGAGGTGGAGAAACAAGAGTCAGAAGAACAGAGGCGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAAGATGGAGGTGGAGAAACAAGAGTCAGAAGAACAGAGGCGGCT  750

seq1  GAAAGGAATAGGGGTCAAGGGTCAAAAGAGAGGCTTTGCTTAGTGGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATAGGGGTCAAGGGTCAAAAGAGAGGCTTTGCTTAGTGGATGG  800

seq1  TGTGGCAAAACAGACTTGGGCCACTCTTGTCAGATTATGTTTGTAATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAAACAGACTTGGGCCACTCTTGTCAGATTATGTTTGTAATGGT  850

seq1  GTGATACAGAGTTGGGCTAGAAGACTAAA-GGATTCCTTGAACAGAGTCG  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGATACAGAGTTGGGCTAGAAGACTAAAGGGATTCCTTGAACAGAGTCG  900

seq1  AAGGATGA-TGTTAAAGGATGATGATGCATTTTGTTTTT-CTTTAGTGGA  947
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGATGATTGTTAAAGGATGATGATGCATTTTGTTTTTCCTTTAGTGGA  950

seq1  AACAGATGTAGAATGGTACTGAAGCAGCCTAGCATAAAATATTATAAAAG  997
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  AACAGATGTAGAATGGTACTGAAGCAGCCTAGCAT-AAATA-TATAAAAG  998

seq1  AGTAATATGTGTTTGACTATGATTTCATATCTATAGTGAAATGGATGTTT  1047
      |||||||||||||||||||||| |||||||||||||||||   |||||| 
seq2  AGTAATATGTGTTTGACTATGA-TTCATATCTATAGTGAA--TGATGTT-  1044

seq1  CCTTTAGGTATGGGAATGTTATGATGGCATGTCAATAATTCAAATTCTCT  1097
         |||| ||||||||||||||||| ||||||| |||||   ||||||||
seq2  --CTTAGTTATGGGAATGTTATGAT-GCATGTC-ATAAT--CAATTCTCT  1088

seq1  GCCAGCTGAAAGTTTTTACCTCTTAGAAGAGCAAAA  1133
      | |||||||||| ||||| ||||||| | |||||||
seq2  G-CAGCTGAAAGGTTTTA-CTCTTAGGAAAGCAAAA  1122


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