BAC Information

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BAC

Clone NameB6Ng01-277F15
Chromosome15 (Build37)
Map Location 51,601,631 - 51,743,527
singlet/doubletdoublet
Overlap geneEif3s3, LOC100039679, D530033C11Rik
Upstream geneTrps1, LOC100039644, LOC100039662
Downstream geneRad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277F15.bB6Ng01-277F15.g
ACCGA077896GA077897
length1,1411,094
definitionB6Ng01-277F15.b B6Ng01-277F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,601,631 - 51,602,693)(51,742,418 - 51,743,527)
sequence
gaattcaatgttgcctattcagtgacattcagaattgcctctggcattac
actatcacttagaataaaagccaagttgctcccatatacaggaatttaca
atggtttaggaagtagatcagatcaggctgtggttttagggtaatgcatt
attcatgagatggctagttagagcagaactccctaattagaaccatgact
tgggtgtgaaagcccttgccctaggagagtaaagatctcacacctggctt
ctaagactatagctgaccttagatagggctgactttgtctcagttgtttt
attgcccagttcctgccaatctttgtgtttacattcctctgtttagtgta
agtcattaagcatccagtaacctcatttgtaccttgttgatgtgtcacct
aacttccctattttcttctgtataaaaagtttgatgctcaatttgacaaa
ttacattcagattctacacaatcttgcgtgttggtctgtctttcacttct
ctgattccttgcccaccttcgaccagagacctgttccacgcaaacaaagg
gacccagagggtctgtggcaccagctgataattgtcattcaaagggggag
cctatcaatcatgtggctaatcatataagacggtcagggcctctttgatc
tttgccattctgcaacttctctctctctctctgcctctctctctctctct
gtctctctctgtctctctctctcaagatttgtttatttacttattacgta
tacaatgttctccctgcttgtatgcctgcagaccagaagagggcatctga
tctcattatggatggttatgagctaccatgtggttgctgggacctcagga
cctctgagccatctctccagcctgctttttctttttcttttcttcctctt
tctattctctctcctcttccttctttatctatctagatatctagctatcc
atctatcatcatttatgtatctatcatctatcggtatacatcatctgtgt
atctgtcactttgtctgtctgccttttgtctgtctatcatatatatgcaa
ctattagaagagaatctttctgattcctctggtgctaccttctagtgctg
ggagccacagggcatgtgccacttatgcggaccttttattc
tcttgaatgtacagttacaaataagagaatggtgacagggcgattcgtag
gggaggctggagctccccctaggggcggagatgaggtatctctaaaaatg
ccgtgaggttcagataggtaatttcttatttttgaaggagataaaaccta
accttatgtggcagcattgttgaaagaacctcaaaggatgaaagatctaa
tgataaatctttggttacaaatccatccaaaaagccatctaccaaacatc
aagatgtaagatacaagatatttgaatattaaagttgaaatttattaatt
ttttgggttgttttttttttttttttgagacaaggttttcctgtgtagca
ctgtctgtctgtcctgaaactcactctgtagaccaggctggcctcgaact
cagagatcaccctcgctctgcttcacaagggctggaattaagtgtgtgtg
ccaccaccaactggcttgaaatttattaattcttttaacacctatttttt
ttttttgtggggtcttggatgagaacatgaaaacgcaagcgatgtgtggg
tactgagattagcaaacagcttgcacgagtaagtttcttcttccaccaag
agaatcctgggaattgaactcaaattatcagactccgtagcaagtacctt
tatcatagcagcacaaaatggaaattatgtaaaaacgagtctttggtata
cactgtgtaattacaattattttaatattatacaatttaattttattaca
tttttgtgagatattataattctgttgaacttcaaatgatatctagtcct
gacacccccaaaattctaacagttccaatagtcaagatcaagggcagatt
ttggttttattgttaatttttgttgcatacatgtttatggggtggggtct
tttttgccatttgtattaaaaacatttttattgattccttgaggaatttt
atacaatgtattttgaccatattccgccccccactcctgcccttactcct
cctagatccacctctacctcccccatgcctctcaatctgttcccttttat
aaaaatagccatcatgaatcatccctgggtgaggctagcactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51601631_51602693
seq2: B6Ng01-277F15.b_116_1182

seq1  GTTGCTCCCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCCATATACAGGAATTTACAATGGTTTAGGAAGTAGATCAGATC  50

seq1  AGGCTGTGGTTTTAGGGTAATGCATTATTCATGAGATGGCTAGTTAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGTTTTAGGGTAATGCATTATTCATGAGATGGCTAGTTAGAGC  100

seq1  AGAACTCCCTAATTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCCTAATTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAG  150

seq1  GAGAGTAAAGATCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAAAGATCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGAT  200

seq1  AGGGCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCAATCTTT  250

seq1  GTGTTTACATTCCTCTGTTTAGTGTAAGTCATTAAGCATCCAGTAACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACATTCCTCTGTTTAGTGTAAGTCATTAAGCATCCAGTAACCTC  300

seq1  ATTTGTACCTTGTTGATGTGTCACCTAACTTCCCTATTTTCTTCTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACCTTGTTGATGTGTCACCTAACTTCCCTATTTTCTTCTGTATA  350

seq1  AAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATTCTACACAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATTCTACACAATCT  400

seq1  TGCGTGTTGGTCTGTCTTTCACTTCTCTGATTCCTTGCCCACCTTCGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTTGGTCTGTCTTTCACTTCTCTGATTCCTTGCCCACCTTCGACC  450

seq1  AGAGACCTGTTCCACGCAAACAAAGGGACCCAGAGGGTCTGTGGCACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTGTTCCACGCAAACAAAGGGACCCAGAGGGTCTGTGGCACCAG  500

seq1  CTGATAATTGTCATTCAAAGGGGGAGCCTATCAATCATGTGGCTAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATTGTCATTCAAAGGGGGAGCCTATCAATCATGTGGCTAATCAT  550

seq1  ATAAGACGGTCAGGGCCTCTTTGATCTTTGCCATTCTGCAACTTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACGGTCAGGGCCTCTTTGATCTTTGCCATTCTGCAACTTCTCTCT  600

seq1  CTCTCTCTGCCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCA  650

seq1  AGATTTGTTTATTTACTTATTACGTATACAATGTTCTCCCTGCTTGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTTTATTTACTTATTACGTATACAATGTTCTCCCTGCTTGTATG  700

seq1  CCTGCAGACCAGAAGAGGGCATCTGATCTCATTATGGATGGTTATGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGACCAGAAGAGGGCATCTGATCTCATTATGGATGGTTATGAGCT  750

seq1  ACCATGTGGTTGCTGGGACCTCAGGACCTCTGAGCCATCTCTCCAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGGACCTCAGGACCTCTGAGCCATCTCTCCAGCCTG  800

seq1  CTTTTTCTTTTTCTTTTCTTCCTCTTTCTATTCTCTCTCCTCTTCCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTTCTTTTCTTCCTCTTTCTATTCTCTCTCCTCTTCCTTCT  850

seq1  TTATCTATCTAGATATCTAGCTATCCATCTATCATCATTTATGTATCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCTAGATATCTAGCTATCCATCTATCATCATTTATGTATCTAT  900

seq1  CATCTATCGGTATAACATCATCTGTGTATCTGTCAC-TTGTCTGTCTGCC  949
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  CATCTATCGGTAT-ACATCATCTGTGTATCTGTCACTTTGTCTGTCTGCC  949

seq1  TTTTTGTCTGTCTATCATATATATGC-ACTATTTAGAAGAGAATC-TTCT  997
       ||||||||||||||||||||||||| |||| ||||||||||||| ||||
seq2  -TTTTGTCTGTCTATCATATATATGCAACTA-TTAGAAGAGAATCTTTCT  997

seq1  GATTCTCCTGTGCCTACCTTCTAGTGCTGGGAG-CACA-GGCATGTGCCA  1045
      |||||  |||   |||||||||||||||||||| |||| |||||||||||
seq2  GATTCCTCTGGTGCTACCTTCTAGTGCTGGGAGCCACAGGGCATGTGCCA  1047

seq1  C-TATGCCGA-CTTTTATTC  1063
      | ||||| || |||||||||
seq2  CTTATGCGGACCTTTTATTC  1067

seq1: chr15_51742418_51743527
seq2: B6Ng01-277F15.g_70_1163 (reverse)

seq1  CCAGTGGCTAGCCTCACACCAAGAGAATGAATTAAATAGATGGGCTATTT  50
      ||||| ||||||||||| |||   | |||| | |    ||| ||||||||
seq2  CCAGT-GCTAGCCTCAC-CCA--GGGATGATTCA---TGAT-GGCTATTT  42

seq1  TTTTTTAATAAAAAGGAAAACAAAGAATTGAGAGGCAT-GGGGAGGTAGA  99
      ||     |||||| |||| |      |||||||||||| |||||||||||
seq2  TT-----ATAAAAGGGAACA-----GATTGAGAGGCATGGGGGAGGTAGA  82

seq1  GGTGGATCTAGGAGGAGTTAAGGGCAGGAGTTGGGGGC-GAATATGGTCA  148
      ||||||||||||||||| ||||||||||||| |||||| |||||||||||
seq2  GGTGGATCTAGGAGGAG-TAAGGGCAGGAGTGGGGGGCGGAATATGGTCA  131

seq1  AAATACATTGTATAAAATT-CTCAAAGAATCAATAAAAATGTTTTTAATA  197
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  AAATACATTGTATAAAATTCCTCAAGGAATCAATAAAAATGTTTTTAATA  181

seq1  CAAATTGCAAAAAAGACCCCACCCCATAAACATGTATGCAACAAAAATTA  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAATGGCAAAAAAGACCCCACCCCATAAACATGTATGCAACAAAAATT-  230

seq1  AACAATAAAACCAAAATCTGCCCTTGATCTTGACTATTGGAACTGTTAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAACCAAAATCTGCCCTTGATCTTGACTATTGGAACTGTTAGA  280

seq1  ATTTT-GGGGTGTCAGGACTAGATATCATTTGAAGTTCAACAGAATTATA  346
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGGTGTCAGGACTAGATATCATTTGAAGTTCAACAGAATTATA  330

seq1  ATATCTCACAAAAATGTAATAAAATTAAATTGTATAATATTAAAATAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACAAAAATGTAATAAAATTAAATTGTATAATATTAAAATAATT  380

seq1  GTAATTACACAGTGTATACCAAAGACTCGTTTTTACATAATTTCCATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACACAGTGTATACCAAAGACTCGTTTTTACATAATTTCCATTTT  430

seq1  GTGCTGCTATGATAAAGGTACTTGCTACGGAGTCTGATAATTTGAGTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTATGATAAAGGTACTTGCTACGGAGTCTGATAATTTGAGTTCA  480

seq1  ATTCCCAGGATTCTCTTGGTGGAAGAAGAAACTTACTCGTGCAAGCTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGGATTCTCTTGGTGGAAGAAGAAACTTACTCGTGCAAGCTGTT  530

seq1  TGCTAATCTCAGTACCCACACATCGCTTGCGTTTTCATGTTCTCATCCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCTCAGTACCCACACATCGCTTGCGTTTTCATGTTCTCATCCAA  580

seq1  GACCCCACAAAAAAAAAAAATAGGTGTTAAAAGAATTAATAAATTTCAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCACAAAAAAAAAAAATAGGTGTTAAAAGAATTAATAAATTTCAAG  630

seq1  CCAGTTGGTGGTGGCACACACACTTAATTCCAGCCCTTGTGAAGCAGAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGTGGTGGCACACACACTTAATTCCAGCCCTTGTGAAGCAGAGC  680

seq1  GAGGGTGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCA  730

seq1  GGACAGACAGACAGTGCTACACAGGAAAACCTTGTCTCAAAAAAAAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAGACAGTGCTACACAGGAAAACCTTGTCTCAAAAAAAAAAAA  780

seq1  AAAACAACCCAAAAAATTAATAAATTTCAACTTTAATATTCAAATATCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCAAAAAATTAATAAATTTCAACTTTAATATTCAAATATCTT  830

seq1  GTATCTTACATCTTGATGTTTGGTAGATGGCTTTTTGGATGGATTTGTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTACATCTTGATGTTTGGTAGATGGCTTTTTGGATGGATTTGTAA  880

seq1  CCAAAGATTTATCATTAGATCTTTCATCCTTTGAGGTTCTTTCAACAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATTTATCATTAGATCTTTCATCCTTTGAGGTTCTTTCAACAATG  930

seq1  CTGCCACATAAGGTTAGGTTTTATCTCCTTCAAAAATAAGAAATTACCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACATAAGGTTAGGTTTTATCTCCTTCAAAAATAAGAAATTACCTA  980

seq1  TCTGAACCTCACGGCATTTTTAGAGATACCTCATCTCCGCCCCTAGGGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCTCACGGCATTTTTAGAGATACCTCATCTCCGCCCCTAGGGGG  1030

seq1  AGCTCCAGCCTCCCCTACGAATCGCCCTGTCACCATTCTCTTATTTGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCCTCCCCTACGAATCGCCCTGTCACCATTCTCTTATTTGTAA  1080

seq1  CTGTACATTCAAGA  1110
      ||||||||||||||
seq2  CTGTACATTCAAGA  1094