BAC Information

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BAC

Clone NameB6Ng01-278G13
Chromosome15 (Build37)
Map Location 10,650,612 - 10,748,752
singlet/doubletdoublet
Overlap genenone
Upstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G13.bB6Ng01-278G13.g
ACCGA078660GA078661
length1,112702
definitionB6Ng01-278G13.b B6Ng01-278G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,650,612 - 10,651,746)(10,748,055 - 10,748,752)
sequence
gaattccacaagctctttgtttgccttgccttagtggaaattcctccagc
tatccaaacacgcacctgggggaggtgttttttttttccccctccacatt
tcaggaaggggtttcttctaagtaaaaatgtgtccttacctctcttctaa
gttctcaggcaagacttctggtttgagttgaagatgactatgaatgtgtt
ctggttggaaagggaggtggagttggaggagccggagaggtctgtagcaa
atgttcctccaacagagctaagctgggaaaaggaaagccaatggaagcca
acaaagaaggaagcacgaagcaaggctcccccagattcctagaagcccag
gaacacaaaagccaggaagatgaatcgtcttttacagtagtagacctgta
tataggaacggggaagattctagggtgaaagatccgggctgccgctggtc
acccagaagggagtatgtaccttgagtttcgtaacacggaatggaagttt
ggaggccccttgaaaagaaccaaagcacaaaggaagttgggcctgaagaa
ggctgggagacctctcacgcagagacccagggctcaggacagagaaagga
aggtagaacgccaagtggatctcatatttgctctgcgggcttctgggaag
tgtttgaaaacattctatttaaactgtgcctcttaagagagctctccact
tacatctaactcagtgtgctcatattagcaaatagaaattatgggaacat
tccaagtgctccccgccttcctggtcctccctccctgaccccgatagtct
gtcctgcctggagtctgggcgaatgtttgtttctgagggatggaactgat
taaaaactagaggctgcttgggaaaaattttataatagcatgtgtgagtg
agttccacagatgctagggagggcaggatgccccgtgcagccaggctcat
gcagccatctgaaaaagagctctcttcaacccagagctgtgtcttaatgt
ggttgaactgctttttcatatttcccttagcttttacactaaaccagatg
gaaatttgagaatggaacattgtttggttttttcctttttcttttttttt
ttatgagacagg
gaattccaacaattcccagaaggagtaatacagggctgtctaacaactgc
attcagccaagaggagatggggaggggggagggcatgagggctggcagta
ggcaacaaagccatcctgaagtccacatcctggccacaaagcatcccatc
tagtcaaaacaaaacttgattcaaatttcttctttcccagaggatgttgg
acctgggtgtgtcatgccactgtatctgacgcacttcttttgtctaaaaa
ccaccagatttctaaaatcctgcctgacttttacctggacaagtttggat
aatgcatgggtgtttccttctaacaatgtcccctctcccaagccacatcc
gcctctttgggtgctccattgcagcccagtgtgggcaatctgtgcaaagt
ctacgtttctcctcttcctgctgaggtctgcttcagagcctgccggactg
ggtggagtgtatgagtaaccatggaaccagctgctcgctgcaggctttct
catccttccctggatagagtctgtcctttagagtgttttagcctcaagga
ccgcatcagaagccagaagggttcccctggaggaaatggaagtgtttttc
atggctgcctgccacagtgtgcagcaggaaaagggaggggttctcttttg
gcaacacgctggtggccgcccatccagccccttccaggacctgtgttctc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10650612_10651746
seq2: B6Ng01-278G13.b_44_1155

seq1  GAATTCCACAAGCTCTTTGTTTGCCTTGCCTTAGTGGAAATTCCTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGCTCTTTGTTTGCCTTGCCTTAGTGGAAATTCCTCCAGC  50

seq1  TATCCAAACACGCACCTGGGGGAGGTGTTTTTTTTTTCCCCCTCCACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAACACGCACCTGGGGGAGGTGTTTTTTTTTTCCCCCTCCACATT  100

seq1  TCAGGAAGGGGTTTCTTCTAAGTAAAAATGTGTCCTTACCTCTCTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGGGTTTCTTCTAAGTAAAAATGTGTCCTTACCTCTCTTCTAA  150

seq1  GTTCTCAGGCAAGACTTCTGGTTTGAGTTGAAGATGACTATGAATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGGCAAGACTTCTGGTTTGAGTTGAAGATGACTATGAATGTGTT  200

seq1  CTGGTTGGAAAGGGAGGTGGAGTTGGAGGAGCCGGAGAGGTCTGTAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGAAAGGGAGGTGGAGTTGGAGGAGCCGGAGAGGTCTGTAGCAA  250

seq1  ATGTTCCTCCAACAGAGCTAAGCTGGGAAAAGGAAAGCCAATGGAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTCCAACAGAGCTAAGCTGGGAAAAGGAAAGCCAATGGAAGCCA  300

seq1  ACAAAGAAGGAAGCACGAAGCAAGGCTCCCCCAGATTCCTAGAAGCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAGGAAGCACGAAGCAAGGCTCCCCCAGATTCCTAGAAGCCCAG  350

seq1  GAACACAAAAGCCAGGAAGATGAATCGTCTTTTACAGTAGTAGACCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAAAGCCAGGAAGATGAATCGTCTTTTACAGTAGTAGACCTGTA  400

seq1  TATAGGAACGGGGAAGATTCTAGGGTGAAAGATCCGGGCTGCCGCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAACGGGGAAGATTCTAGGGTGAAAGATCCGGGCTGCCGCTGGTC  450

seq1  ACCCAGAAGGGAGTATGTACCTTGAGTTTCGTAACACGGAATGGAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGGGAGTATGTACCTTGAGTTTCGTAACACGGAATGGAAGTTT  500

seq1  GGAGGCCCCTTGAAAAGAACCAAAGCACAAAGGAAGTTGGGCCTGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCCTTGAAAAGAACCAAAGCACAAAGGAAGTTGGGCCTGAAGAA  550

seq1  GGCTGGGAGACCTCTCACGCAGAGACCCAGGGCTCAGGACAGAGAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAGACCTCTCACGCAGAGACCCAGGGCTCAGGACAGAGAAAGGA  600

seq1  AGGTAGAACGCCAAGTGGATCTCATATTTGCTCTGCGGGCTTCTGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAACGCCAAGTGGATCTCATATTTGCTCTGCGGGCTTCTGGGAAG  650

seq1  TGTTTGAAAACATTCTATTTAAACTGTGCCTCTTAAGAGAGCTCTCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAAACATTCTATTTAAACTGTGCCTCTTAAGAGAGCTCTCCACT  700

seq1  TACATCTAACTCAGTGTGCTCATATTAGCAAATAGAAATTATGGGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTAACTCAGTGTGCTCATATTAGCAAATAGAAATTATGGGAACAT  750

seq1  TCCAAGTGCTCCCCGCCTTCCTGGTCCTCCCTCCCTGACCCCGATAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGCTCCCCGCCTTCCTGGTCCTCCCTCCCTGACCCCGATAGTCT  800

seq1  GTCCTGCCTGGAGTCTGGGCGAATGTTTGTTTCTGAGGGATGGAAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCCTGCCTGGAGTCTGGGCGAATGTTTGTTTCTGAGGGATGG-AACTGA  849

seq1  TTAAAAACTAGAAGGCTGCTTGGGAAAAATTTTATAATAGCATGTGTGAG  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TTAAAAACTAG-AGGCTGCTTGGGAAAAATTTTATAATAGCATGTGTGA-  897

seq1  GTGAGTTCCACAGAAGGCTAGGGAGGGCAGGAAGGCCCCGTGCAGCCAGG  950
      ||||||||||||| | ||||||||||||||| | |||||||||||||| |
seq2  GTGAGTTCCACAG-ATGCTAGGGAGGGCAGG-ATGCCCCGTGCAGCCA-G  944

seq1  GCTCCATGCAGGCCATCTGAAAAAAGAGGCTCCTCTTCCAACCCAGAGCT  1000
      ||| |||||| |||||||| ||||||| ||| ||||| ||||||||||||
seq2  GCT-CATGCA-GCCATCTG-AAAAAGA-GCT-CTCTT-CAACCCAGAGCT  988

seq1  GTTGTCTTAATTGTGGTGGAACTGC-TTTTCATA-TTCCCTTAGCTTTTT  1048
      | |||||||| |||||| ||||||| |||||||| |||||||||||||| 
seq2  G-TGTCTTAA-TGTGGTTGAACTGCTTTTTCATATTTCCCTTAGCTTTT-  1035

seq1  AACACTAAACCAAGATGAGAAATTGAGAAATGAACATTTGTTTGGTTTTT  1098
       |||||||||| |||||  || |||||||  ||||| ||||||||  |||
seq2  -ACACTAAACC-AGATGGAAATTTGAGAATGGAACA-TTGTTTGG--TTT  1080

seq1  TTTCTTTTTTTCTTTTTTTTTTTTTTTTTGAGACAGG  1135
      |||| ||     ||| ||||||||||| |||||||||
seq2  TTTCCTT-----TTTCTTTTTTTTTTTATGAGACAGG  1112

seq1: chr15_10748055_10748752
seq2: B6Ng01-278G13.g_65_766 (reverse)

seq1  ATGAGAACACAGGTCCT-GAAGGGGCTGGCTGGGCGGCCACCAGCGTGTT  49
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  ATGAGAACACAGGTCCTGGAAGGGGCTGGATGGGCGGCCACCAGCGTGTT  50

seq1  GCC-AAAGAGAACCCCTCCCTTTTCCTGCTGCACACTGTGGCAGGCAGCC  98
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGAGAACCCCTCCCTTTTCCTGCTGCACACTGTGGCAGGCAGCC  100

seq1  ATGAAAAACACTTCCATTTCCTCCAGGGGAACCCTTCTGGCTTCTGATGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAACACTTCCATTTCCTCCAGGGGAACCCTTCTGGCTTCTGATGC  150

seq1  GGTCCTTGAGGCT-AAACACTCTAAAGGACAGACTCTATCCAGGGAAGGA  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTGAGGCTAAAACACTCTAAAGGACAGACTCTATCCAGGGAAGGA  200

seq1  TGAG-AAGCCTGCAGCGAGCAGCTGGTTCCATGGTTACTCATACACTCCA  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCCTGCAGCGAGCAGCTGGTTCCATGGTTACTCATACACTCCA  250

seq1  CCCAGTCCGGCAGGCTCTGAAGCAGACCTCAGCAGGAAGAGGAGAAACGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCGGCAGGCTCTGAAGCAGACCTCAGCAGGAAGAGGAGAAACGT  300

seq1  AGACTTTGCACAGATTGCCCACACTGGGCTGCAATGGAGCACCCAAAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGCACAGATTGCCCACACTGGGCTGCAATGGAGCACCCAAAGAG  350

seq1  GCGGATGTGGCTTGGGAGAGGGGACATTGTTAGAAGGAAACACCCATGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATGTGGCTTGGGAGAGGGGACATTGTTAGAAGGAAACACCCATGCA  400

seq1  TTATCCAAACTTGTCCAGGTAAAAGTCAGGCAGGATTTTAGAAATCTGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAAACTTGTCCAGGTAAAAGTCAGGCAGGATTTTAGAAATCTGGT  450

seq1  GGTTTTTAGACAAAAGAAGTGCGTCAGATACAGTGGCATGACACACCCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAGACAAAAGAAGTGCGTCAGATACAGTGGCATGACACACCCAG  500

seq1  GTCCAACATCCTCTGGGAAAGAAGAAATTTGAATCAAGTTTTGTTTTGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACATCCTCTGGGAAAGAAGAAATTTGAATCAAGTTTTGTTTTGAC  550

seq1  TAGATGGGATGCTTTGTGGCCAGGATGTGGACTTCAGGATGGCTTTGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGATGCTTTGTGGCCAGGATGTGGACTTCAGGATGGCTTTGTTG  600

seq1  CCTACTGCCAGCCCTCATGCCCTCCCCCCTCCCCATCTCCTCTTGGCTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCAGCCCTCATGCCCTCCCCCCTCCCCATCTCCTCTTGGCTGA  650

seq1  ATGCAGTTGTTAGACAGCCCTGTATTACTCCTTCTGGGAATTGTTGGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTGTTAGACAGCCCTGTATTACTCCTTCTGGGAATTGTTGGAAT  700

seq1  TC  698
      ||
seq2  TC  702