BAC Information

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BAC

Clone NameB6Ng01-278H06
Chromosome15 (Build37)
Map Location 16,262,881 - 16,354,153
singlet/doubletdoublet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H06.bB6Ng01-278H06.g
ACCGA078692GA078693
length1381,161
definitionB6Ng01-278H06.b B6Ng01-278H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,354,016 - 16,354,153)(16,262,881 - 16,263,731)
sequence
tctctaatatgttatgagtataaatctgtggtagtcaatttgcttgatga
aattgaattgataaaaacaagcactaaagctgaaaactatcaaggaattt
tataaataatggatctggatgggaagggggaggaagga
gaattcagtaagagtgttgcctattcagtgacattcagaattgcctctag
tattgtaagagagagagagtgaaagaaatcaggcattactatctactaca
tagagttagaaatctcaggataagcttagcaacgtaagtttagaattctt
ataatagttatgtatagcagactacattacttattagtagaaagtgtccc
ccccccccccacacacacactatcacttagaataaaagccaagttgctcc
taaatacaggaatttacaatggtttaggaagtaggtcaggctgtggtttt
agtgtattgcattattcatgagaagtttagctagagctaaactccctaat
tagaaccatgacttgggcgtgaaagcccttgccctaggagtgtaaagacc
tcacagctggcttctaagaatatagctgaccttagatagggctgactttg
tctcagttgttttattgcccagttcctgccagtctttgtgtttacattcc
tctgttttgtgtaagagtcattaagcatccggtaacctcatttgtacctt
gccgatgtgtcacctaacttccccattttcttctgtataaaaagtttgat
gcttgatttgacaaattgcattcagatccagcacactctcttgggtctgt
gtctgtctgtcaattctctctggctccatgtctaccagccagaacccctg
attcccatggattgaagtggggcaattgagcccagtccatggcaataaaa
atacagttgtggggtcacccaactgtattaaatggttgcagccttaaaaa
gtttggaaacagctgctataaagggaaaataaagaatttactacaatata
gctatactcagtgaataaatcttgcctattctccttgtagatttatggga
aaaaaaatgtcaaatggtacctttattttctcaataacattgcagttgaa
aaactccattgtttctattatttaataagtcatgtagaaagaacatttac
acttagtttagaagttcaagaaaggcacacacacaaacacacacacacat
atgattgtaagatgatttaaattctgatcagcatttattttgcacaatca
gtgaaatatagaatgtggccagtgaaacacatacgtgtccactgaatttt
atatggatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16354016_16354153
seq2: B6Ng01-278H06.b_48_185 (reverse)

seq1  TCCTTCCTCCCCCTTCCCATCCAGATCCATTATTTATAAAATTCCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCCCCCTTCCCATCCAGATCCATTATTTATAAAATTCCTTGAT  50

seq1  AGTTTTCAGCTTTAGTGCTTGTTTTTATCAATTCAATTTCATCAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGCTTTAGTGCTTGTTTTTATCAATTCAATTTCATCAAGCAAA  100

seq1  TTGACTACCACAGATTTATACTCATAACATATTAGAGA  138
      ||||||||||||||||||||||||||||||||||||||
seq2  TTGACTACCACAGATTTATACTCATAACATATTAGAGA  138

seq1: chr15_16262881_16263731
seq2: B6Ng01-278H06.g_380_1222

seq1  TGAGAAGTTTAGCTAGAGCTAAACTCCCTAATTAGAACCATGACTTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTTTAGCTAGAGCTAAACTCCCTAATTAGAACCATGACTTGGGC  50

seq1  GTGAAAGCCCTTGCCCTAGGAGTGTAAAGACCTCACAGCTGGCTTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCCCTTGCCCTAGGAGTGTAAAGACCTCACAGCTGGCTTCTAAG  100

seq1  AATATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTATTGC  150

seq1  CCAGTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTTTTGTGTAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTTTTGTGTAAGAGT  200

seq1  CATTAAGCATCCGGTAACCTCATTTGTACCTTGCCGATGTGTCACCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGCATCCGGTAACCTCATTTGTACCTTGCCGATGTGTCACCTAAC  250

seq1  TTCCCCATTTTCTTCTGTATAAAAAGTTTGATGCTTGATTTGACAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATTTTCTTCTGTATAAAAAGTTTGATGCTTGATTTGACAAATTG  300

seq1  CATTCAGATCCAGCACACTCTCTTGGGTCTGTGTCTGTCTGTCAATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGATCCAGCACACTCTCTTGGGTCTGTGTCTGTCTGTCAATTCTC  350

seq1  TCTGGCTCCATGTCTACCAGCCAGAACCCCTGATTCCCATGGATTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCATGTCTACCAGCCAGAACCCCTGATTCCCATGGATTGAAGT  400

seq1  GGGGCAATTGAGCCCAGTCCATGGCAATAAAAATACAGTTGTGGGGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATTGAGCCCAGTCCATGGCAATAAAAATACAGTTGTGGGGTCAC  450

seq1  CCAACTGTATTAAATGGTTGCAGCCTTAAAAAGTTTGGAAACAGCTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTATTAAATGGTTGCAGCCTTAAAAAGTTTGGAAACAGCTGCTA  500

seq1  TAAAGGGAAAATAAAGAATTTACTACAATATAGCTATACTCAGTGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAAAATAAAGAATTTACTACAATATAGCTATACTCAGTGAATAA  550

seq1  ATCTTGCCTATTCTCCTTGTAGATTTATGGGAAAAAAAATGTCAAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTATTCTCCTTGTAGATTTATGGGAAAAAAAATGTCAAATGGT  600

seq1  ACCTTTA-TTTCTCAATAACATTGCAGTTGAAAAACTCCA-TGTTTCTA-  647
      ||||||| |||||||||||||||||||||||||||||||| |||||||| 
seq2  ACCTTTATTTTCTCAATAACATTGCAGTTGAAAAACTCCATTGTTTCTAT  650

seq1  TATTTAATAA-TCATGTAGAA--GACATTTACACTTAGTTTAG-AGTTCA  693
      |||||||||| ||||||||||   ||||||||||||||||||| ||||||
seq2  TATTTAATAAGTCATGTAGAAAGAACATTTACACTTAGTTTAGAAGTTCA  700

seq1  GGAAA-GCACACACACAAACACACACACACATATGATTGTTAAGATTGAT  742
       |||| ||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AGAAAGGCACACACACAAACACACACACACATATGATTG-TAAGA-TGAT  748

seq1  TTAAATTCTGATCAGCCATTTATTTTTGCCAACAATCCAGTGAAAATTAT  792
      ||||||||||||||| |||||| ||||||  ||||| ||||||||  |||
seq2  TTAAATTCTGATCAG-CATTTA-TTTTGC--ACAAT-CAGTGAAA--TAT  791

seq1  AGGAGTGTGGCAAGTTGAAACAACATACAGTGTCCACCTTGATATTTTAT  842
      | || |||||| || |||||| |||||| ||||||||  ||| |||||||
seq2  A-GAATGTGGCCAG-TGAAAC-ACATAC-GTGTCCAC--TGA-ATTTTAT  834

seq1  TATGATACT  851
         ||||||
seq2  ATGGATACT  843