BAC Information

Click to search

BAC

Clone NameB6Ng01-278P03
Chromosome15 (Build37)
Map Location 53,624,520 - 53,783,262
singlet/doubletdoublet
Overlap geneSamd12, EG665097
Upstream geneLOC100039745, Ext1
Downstream geneEG621631, Tnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278P03.bB6Ng01-278P03.g
ACCGA079055GA079056
length1,1471,103
definitionB6Ng01-278P03.b B6Ng01-278P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,624,520 - 53,625,674)(53,782,150 - 53,783,262)
sequence
gaattcttttgtagcactccattattgccagtttaggagaatgataattt
aatttacaccacttgatcttgacctctgtgcagagatatttgtaacaatg
agtcagaagtagccactagtaaaccaagtgaaaataacattcgtccacat
gcttatcacatacagcttttgagaagacactatacatcagaaagtgtcat
ttactggccatgttgtgtggtactatagcccacatctacagtgtacccaa
catctggaacttgtgtcatcatcatttcctaaagggttagaacagaagag
aaaatatctttattttgtattacagagttcctcccacaagagctgagaca
ataactaagattgattgctaatacttgtcaatattcaacatatagaaagc
acttcatcaaataaaggaaaaccagacaccatcactaccgatttcaatgc
tatgaaaacttgaaagttcctgtgaaattcaagtaaaagttcattacggt
tgtgtcatttaaaaaataaactgactgtgacagcctgggatattatattt
tccttcacaaaagatctactggaattcaaatactactcacttatcattga
caacccatctagaatggcagaaggaaacggagctgttaacaaaagggatg
ttttaatataaaacacataccaaactaccaaagaatacataaataaatac
accccaagctgtaaaacataatctgattttgttattcccctgtaaagcat
tcagaaggataggccaggaatgcagaaaaagaccagttcttattcagaga
aactgacagcaatgaaaattgaaatgctcatatagcaaagaaaaggagaa
aaaaactataggtgatttgacaattctgcattttctttatattactgggt
tatttcagaccatatgagatgtctagcagatcaactgacaaatttagaaa
tatattaatattaaaattagcatatgaatgtttttagagattggaaactc
tgggtagatttatatgtagactttagagcatgctgctactcctccactgt
gccagttatcatggtggggtctaacgaggactgaagctcttgttggagaa
gcatgtatttcttaaaatgcaaaagtcaacttctttgccaaactctt

gaattcctaacaccttaactaagttgtagagacaatgttttctgtgtgaa
taagattaacaaatgtatagcaatgaccacactttgatagttggacaaca
gatatgtgtcatgctctgacatacagctgagagaaatgttggctaaggtt
gagttacaaaaaattgccttcaactgaaaaaaatatgaatagataatata
ataaagtatttctttttaaagtctgaaattaacatttatttctttcaaat
gaattacaacgatcaccttctttcaaaaaatggattagcataaataagac
tatggccttaatattaacatttagctacaaaagttctctagggtcctgaa
ctataactatatctacagtaaaaattagaagaaatataccttagataaca
gaaatcagtaattaggatgttagctacaaaattgattttaccacttttta
attcagtcagaaagtgcacaaatgctcaggacttgcttgtttcttatttt
ttctttcttaggtcaactatttttaggaattccaggtaggaactgtttag
gcaaattaatacacctggggtagccatgaagaggcataattcattttttt
caggctatgaaaggggggtacatttattcaaaatatctgaaagtacattt
tcactaagaaacttggaaaattgcatttataactcacaaatctattataa
ggatagtgtgggtaaaataagtgtgtggggctgtggtgctgaggtggaca
cttgatgataggctagagtgagcttcgggatctccaccagccaggattaa
actatttagcatttgcaaattattttccaggcatttgagattccacagcc
acaagtgtggtccctgttacttcagttttggctttctttcatagcagtgt
actgacttgagttgggtactgagttcatctaagctttacctaaactagta
agttgtgtgcagatgcagtgcatgaccacatgcataaaacacatatcccc
cccatacatctgcacacatgctgcacacaattcttgcacacatgctgcac
acacacaatgcatctcatacatgaccgatgttactaaagtactctactga
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53624520_53625674
seq2: B6Ng01-278P03.b_45_1191

seq1  GAATTCTTTTGTAGCACTCCATTATTGCCAGTTTAGGAGAATGATAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTAGCACTCCATTATTGCCAGTTTAGGAGAATGATAATTT  50

seq1  AATTTACACCACTTGATCTTGACCTCTGTGCAGAGATATTTGTAACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACCACTTGATCTTGACCTCTGTGCAGAGATATTTGTAACAATG  100

seq1  AGTCAGAAGTAGCCACTAGTAAACCAAGTGAAAATAACATTCGTCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGTAGCCACTAGTAAACCAAGTGAAAATAACATTCGTCCACAT  150

seq1  GCTTATCACATACAGCTTTTGAGAAGACACTATACATCAGAAAGTGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCACATACAGCTTTTGAGAAGACACTATACATCAGAAAGTGTCAT  200

seq1  TTACTGGCCATGTTGTGTGGTACTATAGCCCACATCTACAGTGTACCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCCATGTTGTGTGGTACTATAGCCCACATCTACAGTGTACCCAA  250

seq1  CATCTGGAACTTGTGTCATCATCATTTCCTAAAGGGTTAGAACAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAACTTGTGTCATCATCATTTCCTAAAGGGTTAGAACAGAAGAG  300

seq1  AAAATATCTTTATTTTGTATTACAGAGTTCCTCCCACAAGAGCTGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTTTATTTTGTATTACAGAGTTCCTCCCACAAGAGCTGAGACA  350

seq1  ATAACTAAGATTGATTGCTAATACTTGTCAATATTCAACATATAGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAGATTGATTGCTAATACTTGTCAATATTCAACATATAGAAAGC  400

seq1  ACTTCATCAAATAAAGGAAAACCAGACACCATCACTACCGATTTCAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCAAATAAAGGAAAACCAGACACCATCACTACCGATTTCAATGC  450

seq1  TATGAAAACTTGAAAGTTCCTGTGAAATTCAAGTAAAAGTTCATTACGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACTTGAAAGTTCCTGTGAAATTCAAGTAAAAGTTCATTACGGT  500

seq1  TGTGTCATTTAAAAAATAAACTGACTGTGACAGCCTGGGATATTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATTTAAAAAATAAACTGACTGTGACAGCCTGGGATATTATATTT  550

seq1  TCCTTCACAAAAGATCTACTGGAATTCAAATACTACTCACTTATCATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACAAAAGATCTACTGGAATTCAAATACTACTCACTTATCATTGA  600

seq1  CAACCCATCTAGAATGGCAGAAGGAAACGGAGCTGTTAACAAAAGGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATCTAGAATGGCAGAAGGAAACGGAGCTGTTAACAAAAGGGATG  650

seq1  TTTTAATATAAAACACATACCAAACTACCAAAGAATACATAAATAAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATAAAACACATACCAAACTACCAAAGAATACATAAATAAATAC  700

seq1  ACCCCAAGCTGTAAAACATAATCTGATTTTGTTATTCCCCTGTAAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGCTGTAAAACATAATCTGATTTTGTTATTCCCCTGTAAAGCAT  750

seq1  TCAGAAGGATAGGCCAGGAATGCAGAAAAAGACCAGTTCTTATTCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGATAGGCCAGGAATGCAGAAAAAGACCAGTTCTTATTCAGAGA  800

seq1  AACTGACAGCAATGAAAATTGAAATGCTCATATAGCAAAGAAAAGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACAGCAATGAAAATTGAAATGCTCATATAGCAAAGAAAAGGAGAA  850

seq1  AAAAACTATAGGTGATTTGACAATTCTGCATTTTCTTTATATTACTGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATAGGTGATTTGACAATTCTGCATTTTCTTTATATTACTGGGT  900

seq1  TATTTCAGACCATATGAGATGTCTAGCAGATCAACTGACAAATTTAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGACCATATGAGATGTCTAGCAGATCAACTGACAAATTTAGAAA  950

seq1  TATATTAATATTTAAAATTAGGCATATGAATG-TTTTAGAGATTGGAAAC  999
      |||||||||| ||||||||| ||||||||||| |||||||||||||||||
seq2  TATATTAATA-TTAAAATTA-GCATATGAATGTTTTTAGAGATTGGAAAC  998

seq1  TCTGGGTAGATTTAATAATGTAGACTTTAGAGCCATGCTTGCTTACT-CT  1048
      ||||||||||||||   ||||||||||||||| ||||| ||| |||| ||
seq2  TCTGGGTAGATTTA--TATGTAGACTTTAGAG-CATGC-TGC-TACTCCT  1043

seq1  CCACTGTGCCAGTTATCATGGTGGGGTCTACCGAGGACTGAAGCTCTGTT  1098
      |||||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  CCACTGTGCCAGTTATCATGGTGGGGTCTAACGAGGACTGAAGCTCTTGT  1093

seq1  TGGAGAGCCATGGTATTTCTTAAAATGCAAACATCAAAACTTCTTTGCAA  1148
      ||||||  ||| |||||||||||||||||||  ||  ||||||||||| |
seq2  TGGAGAAGCAT-GTATTTCTTAAAATGCAAAAGTC--AACTTCTTTGCCA  1140

seq1  AACTCTT  1155
      |||||||
seq2  AACTCTT  1147


seq1: chr15_53782150_53783262
seq2: B6Ng01-278P03.g_67_1169 (reverse)

seq1  AGATCTAAGTAGAGTTACTTTTAGTAAACATTCCTGTCCATGTATGAGGA  50
      |||||  ||||||| ||| |||||| |||||  | || ||||||||| ||
seq2  AGATC--AGTAGAG-TAC-TTTAGT-AACAT--CGGT-CATGTATGA-GA  41

seq1  TGCA-TGTGTGTGTGCAAGCATGTGTGCAAGAA-TGTGTGCAAGCATGTG  98
      |||| ||||||||||| |||||||||||||||| ||||||| ||||||||
seq2  TGCATTGTGTGTGTGC-AGCATGTGTGCAAGAATTGTGTGC-AGCATGTG  89

seq1  TGCAAGAATGTATGGGGGGGATATGTG-TTTATGCATGTGTTCATGCACT  147
      ||||   |||||||||||||||||||| |||||||||||| |||||||||
seq2  TGCA--GATGTATGGGGGGGATATGTGTTTTATGCATGTGGTCATGCACT  137

seq1  GCATCTGCACACAACTTACTAGTTTAGGTAAAGCTTAGATGAACTCAGTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCACACAACTTACTAGTTTAGGTAAAGCTTAGATGAACTCAGTA  187

seq1  -CCAACTCAAGTCAGTACACTGCTATGAAAGAAAGCCAAAACCTGAAGTA  246
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCAACTCAAGTCAGTACACTGCTATGAAAGAAAGCCAAAA-CTGAAGTA  236

seq1  ACAGGGACCACACTTGTGGCTGTGGAATCTCAAATGCCTGGAAAATAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACCACACTTGTGGCTGTGGAATCTCAAATGCCTGGAAAATAATT  286

seq1  TGCAAATGCTAAATAGTTTAATCCTGGCTGGTGGAGATCCCGAAGCTCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGCTAAATAGTTTAATCCTGGCTGGTGGAGATCCCGAAGCTCAC  336

seq1  TCTAGCCTATCATCAAGTGTCCACCTCAGCACCACAGCCCCACACACTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTATCATCAAGTGTCCACCTCAGCACCACAGCCCCACACACTTA  386

seq1  TTTTACCCACACTATCCTTATAATAGATTTGTGAGTTATAAATGCAATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCACACTATCCTTATAATAGATTTGTGAGTTATAAATGCAATTT  436

seq1  TCCAAGTTTCTTAGTGAAAATGTACTTTCAGATATTTTGAATAAATGTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTCTTAGTGAAAATGTACTTTCAGATATTTTGAATAAATGTAC  486

seq1  CCCCCTTTCATAGCCTGAAAAAAATGAATTATGCCTCTTCATGGCTACCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTCATAGCCTGAAAAAAATGAATTATGCCTCTTCATGGCTACCC  536

seq1  CAGGTGTATTAATTTGCCTAAACAGTTCCTACCTGGAATTCCTAAAAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTATTAATTTGCCTAAACAGTTCCTACCTGGAATTCCTAAAAATA  586

seq1  GTTGACCTAAGAAAGAAAAAATAAGAAACAAGCAAGTCCTGAGCATTTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTAAGAAAGAAAAAATAAGAAACAAGCAAGTCCTGAGCATTTGT  636

seq1  GCACTTTCTGACTGAATTAAAAAGTGGTAAAATCAATTTTGTAGCTAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCTGACTGAATTAAAAAGTGGTAAAATCAATTTTGTAGCTAACA  686

seq1  TCCTAATTACTGATTTCTGTTATCTAAGGTATATTTCTTCTAATTTTTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTACTGATTTCTGTTATCTAAGGTATATTTCTTCTAATTTTTAC  736

seq1  TGTAGATATAGTTATAGTTCAGGACCCTAGAGAACTTTTGTAGCTAAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATATAGTTATAGTTCAGGACCCTAGAGAACTTTTGTAGCTAAATG  786

seq1  TTAATATTAAGGCCATAGTCTTATTTATGCTAATCCATTTTTTGAAAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTAAGGCCATAGTCTTATTTATGCTAATCCATTTTTTGAAAGAA  836

seq1  GGTGATCGTTGTAATTCATTTGAAAGAAATAAATGTTAATTTCAGACTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCGTTGTAATTCATTTGAAAGAAATAAATGTTAATTTCAGACTTT  886

seq1  AAAAAGAAATACTTTATTATATTATCTATTCATATTTTTTTCAGTTGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATACTTTATTATATTATCTATTCATATTTTTTTCAGTTGAAG  936

seq1  GCAATTTTTTGTAACTCAACCTTAGCCAACATTTCTCTCAGCTGTATGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTTGTAACTCAACCTTAGCCAACATTTCTCTCAGCTGTATGTC  986

seq1  AGAGCATGACACATATCTGTTGTCCAACTATCAAAGTGTGGTCATTGCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGACACATATCTGTTGTCCAACTATCAAAGTGTGGTCATTGCTA  1036

seq1  TACATTTGTTAATCTTATTCACACAGAAAACATTGTCTCTACAACTTAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGTTAATCTTATTCACACAGAAAACATTGTCTCTACAACTTAGT  1086

seq1  TAAGGTGTTAGGAATTC  1113
      |||||||||||||||||
seq2  TAAGGTGTTAGGAATTC  1103


| Home | SequenceCutter | Blast | Download |