BAC Information

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BAC

Clone NameB6Ng01-280H06
Chromosome15 (Build37)
Map Location 21,533,146 - 21,668,294
singlet/doubletdoublet
Overlap genenone
Upstream geneAcot10, LOC100040302, Cdh12
Downstream geneLOC100040351, EG545091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H06.bB6Ng01-280H06.g
ACCGA080174GA080175
length1,1391,131
definitionB6Ng01-280H06.b B6Ng01-280H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,667,162 - 21,668,294)(21,533,146 - 21,534,262)
sequence
gaattcttataaaatgagaacaaagacattaaaatatttaaagcatggtt
atgtagctacagctgtaaaacattttagccatagatctttgaaactggtc
atcttccttgtagttttgtctccttttgaccttttatgatgctatattaa
cagaatctggaatattcttttcattaccatagggtttagaataaggcttc
ttgacaccacgtgcattactaatttgatgtagttctttgtggaatgatgg
ataattcaattagctaacttgttattcattgtggagactgaaaacaagac
aggaagtctctaatctcttggtatttaatttaaattcagcaaggaacatt
ttgaagcatgttaaccacaattttttttttcatttttgatatgtggcttc
tcagtgtggtctttattatgtaaagacttgattattatcaatagcaaaaa
agtatttcctgtagcaaaaatgttaaattttaaagataatttaatagatt
agattgtccaaacatagataagcaacatacctctcagtttgttttctttt
atctctacatggtaaaatgctgtgtgaaaatgctcccctaatcaaagaag
aaaaggcattttatccttcctcactatattaaagcatcatgaaaatcaac
cactatatatccagctgatgatgaccatgaaattgaccttattattaatg
gaagcccagattctaggtagatcatcgtttatgagcacaagttggtgtca
aggcagtggggtcctgtggatatttctttagtatattttccagtgaatgc
accttgtagactgtgcagacatatggaaacatgacaaagacttcagagta
ctaacatgcttttatttctcgtaaaggctgtcaaagagatgaagtttggc
ttacccactttactgtcaagattttagatttagaaataaaagtgtggtga
tgttagatagattttttttcagatattatactgaatatgacttccataca
tagtgctatcttttcagaaaacatttctctttcctatatgtagcctggag
aaacaattcagcctccaaatgacttgttgagatgcaccagttaattttcc
acagtggattgaattaactcttggagattcttatccctc

gaattcattttaggaaagattcttgctattaatatgcttttcctgttatt
attggtcagacataacaatcactaggtattatcccacccattttgagcag
atctctgcagatctatgaaggtgtactgtattttagtgatttcctataga
caaatagatgatttcagtcttaatgatgaccctataagaattcctaaatc
agaaagaagaaaaaaaattcctaaaattatatcagtgattattaatctct
tttatagtgggactgctattaggtccttttctgatagtcaaaactgcaat
gagaactctgtcagtctcccatgttatgccagttaattgcttttaggtag
taaccagactttctcgtactcagagcacattctaagatgttgtagaacaa
ttaaccaaaggtcataaaagggaactaatgatttattataggtgctagga
cagaagtaaaatatcgactgggtttatctacacaaacttcactaatagct
tagttatggtttggtctttcaatgaacctgaggagctgtgacaggtgatg
gacgtttaaccagataattactcctactggatatgcatataaacattctg
ttatgaacttctatgtcaatttatgatttgatattttgtgtgaacttgtg
atgaacttgtgatgaactttaaaacatgtgattatgtattctgaaagatg
tgtaaatactgaggacaaagagaaaaagagaagacattttcccttgcccg
gcttaggatcttcccatttttttcccttagatggttttcataggaaactt
tttacaactaaaatgctataatcacttttcaaagtgtccctttttctttc
agtgacttccaattagcaggctgaatgttagagccatgcagttcctgctg
agagagtattaaagctattctcagaggatcacagaggcaggtcagccaac
aatagcaaggtaacttagaacttagtttaggtaaactttttattattacc
acagcaaccctaaaatatctcataagaacaaagttctttaaaccctccac
aaccctgcctccttgctgcttcagaggcaacagcaagaaaaaaaagactc
agtactacaagtgcattggtctcctcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21667162_21668294
seq2: B6Ng01-280H06.b_44_1182 (reverse)

seq1  GAGGGATAGGATTCTCCAAGAAGTAAATCAAACCACTGTAGAAAATT-AC  49
      |||||||| || |||||||||  ||| |||| ||||||| ||||||| ||
seq2  GAGGGATAAGAATCTCCAAGAGTTAATTCAATCCACTGTGGAAAATTAAC  50

seq1  T-GTGCATCTCA--CAGTCATTTGGA-GCTGAATTGTTTCTTCCAGCTAC  95
      | ||||||||||   ||||||||||| |||||||||||||| |  |||||
seq2  TGGTGCATCTCAACAAGTCATTTGGAGGCTGAATTGTTTCTCCAGGCTAC  100

seq1  AATATAGGAAAGAGAAATG-TTTCTG-AAAGATAGCACTATGTATGGAAG  143
       |||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  -ATATAGGAAAGAGAAATGTTTTCTGAAAAGATAGCACTATGTATGGAAG  149

seq1  TCATATTCAGTATAATATCTGAAAAAAAATCTTATCTAACATCACCACAC  193
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCATATTCAGTATAATATCTGAAAAAAAATC-TATCTAACATCACCACAC  198

seq1  TTTTATTTCTAAATCTAAAATCTTGACAGTAAAGTGGGTAAGCCAAACTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTAAATCTAAAATCTTGACAGTAAAGTGGGTAAGCCAAACTT  248

seq1  CATCTCTTTGACAGCC-TTACGAGAAATAAAAGCATGTTAGTACTCTGAA  292
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCTCTTTGACAGCCTTTACGAGAAATAAAAGCATGTTAGTACTCTGAA  298

seq1  GTCTTTGTCATGTTTCCATATGTCTGCACAGTCTACAAGGTGCATTCACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTCATGTTTCCATATGTCTGCACAGTCTACAAGGTGCATTCACT  348

seq1  GGAAAATATACTAAAGAAATATCCACAGGACCCCACTGCCTTGACACCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATACTAAAGAAATATCCACAGGACCCCACTGCCTTGACACCAA  398

seq1  CTTGTGCTCATAAACGATGATCTACCTAGAATCTGGGCTTCCATTAATAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTCATAAACGATGATCTACCTAGAATCTGGGCTTCCATTAATAA  448

seq1  TAAGGTCAATTTCATGGTCATCATCAGCTGGATATATAGTGGTTGATTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAATTTCATGGTCATCATCAGCTGGATATATAGTGGTTGATTTT  498

seq1  CATGATGCTTTAATATAGTGAGGAAGGATAAAATGCCTTTTCTTCTTTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCTTTAATATAGTGAGGAAGGATAAAATGCCTTTTCTTCTTTGA  548

seq1  TTAGGGGAGCATTTTCACACAGCATTTTACCATGTAGAGATAAAAGAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAGCATTTTCACACAGCATTTTACCATGTAGAGATAAAAGAAAA  598

seq1  CAAACTGAGAGGTATGTTGCTTATCTATGTTTGGACAATCTAATCTATTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAGAGGTATGTTGCTTATCTATGTTTGGACAATCTAATCTATTA  648

seq1  AATTATCTTTAAAATTTAACATTTTTGCTACAGGAAATACTTTTTTGCTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTTTAAAATTTAACATTTTTGCTACAGGAAATACTTTTTTGCTA  698

seq1  TTGATAATAATCAAGTCTTTACATAATAAAGACCACACTGAGAAGCCACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATAATCAAGTCTTTACATAATAAAGACCACACTGAGAAGCCACA  748

seq1  TATCAAAAATGAAAAAAAAAATTGTGGTTAACATGCTTCAAAATGTTCCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAATGAAAAAAAAAATTGTGGTTAACATGCTTCAAAATGTTCCT  798

seq1  TGCTGAATTTAAATTAAATACCAAGAGATTAGAGACTTCCTGTCTTGTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATTTAAATTAAATACCAAGAGATTAGAGACTTCCTGTCTTGTTT  848

seq1  TCAGTCTCCACAATGAATAACAAGTTAGCTAATTGAATTATCCATCATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCACAATGAATAACAAGTTAGCTAATTGAATTATCCATCATTC  898

seq1  CACAAAGAACTACATCAAATTAGTAATGCACGTGGTGTCAAGAAGCCTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAACTACATCAAATTAGTAATGCACGTGGTGTCAAGAAGCCTTA  948

seq1  TTCTAAACCCTATGGTAATGAAAAGAATATTCCAGATTCTGTTAATATAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACCCTATGGTAATGAAAAGAATATTCCAGATTCTGTTAATATAG  998

seq1  CATCATAAAAGGTCAAAAGGAGACAAAACTACAAGGAAGATGACCAGTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAAAGGTCAAAAGGAGACAAAACTACAAGGAAGATGACCAGTTT  1048

seq1  CAAAGATCTATGGCTAAAATGTTTTACAGCTGTAGCTACATAACCATGCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCTATGGCTAAAATGTTTTACAGCTGTAGCTACATAACCATGCT  1098

seq1  TTAAATATTTTAATGTCTTTGTTCTCATTTTATAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTTAATGTCTTTGTTCTCATTTTATAAGAATTC  1139


seq1: chr15_21533146_21534262
seq2: B6Ng01-280H06.g_292_1195

seq1  TATATCAGTGATTATTAATCTCTTTTATAGTGGGACTGCTATTAGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGTGATTATTAATCTCTTTTATAGTGGGACTGCTATTAGGTCCT  50

seq1  TTTCTGATAGTCAAAACTGCAATGAGAACTCTGTCAGTCTCCCATGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATAGTCAAAACTGCAATGAGAACTCTGTCAGTCTCCCATGTTAT  100

seq1  GCCAGTTAATTGCTTTTAGGTAGTAACCAGACTTTCTCGTACTCAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTAATTGCTTTTAGGTAGTAACCAGACTTTCTCGTACTCAGAGCA  150

seq1  CATTCTAAGATGTTGTAGAACAATTAACCAAAGGTCATAAAAGGGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAGATGTTGTAGAACAATTAACCAAAGGTCATAAAAGGGAACTA  200

seq1  ATGATTTATTATAGGTGCTAGGACAGAAGTAAAATATCGACTGGGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATTATAGGTGCTAGGACAGAAGTAAAATATCGACTGGGTTTAT  250

seq1  CTACACAAACTTCACTAATAGCTTAGTTATGGTTTGGTCTTTCAATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAACTTCACTAATAGCTTAGTTATGGTTTGGTCTTTCAATGAAC  300

seq1  CTGAGGAGCTGTGACAGGTGATGGACGTTTAACCAGATAATTACTCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGCTGTGACAGGTGATGGACGTTTAACCAGATAATTACTCCTAC  350

seq1  TGGATATGCATATAAACATTCTGTTATGAACTTCTATGTCAATTTATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGCATATAAACATTCTGTTATGAACTTCTATGTCAATTTATGAT  400

seq1  TTGATATTTTGTGTGAACTTGTGATGAACTTGTGATGAACTTTAAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTTGTGTGAACTTGTGATGAACTTGTGATGAACTTTAAAACAT  450

seq1  GTGATTATGTATTCTGAAAGATGTGTAAATACTGAGGACAAAGAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATGTATTCTGAAAGATGTGTAAATACTGAGGACAAAGAGAAAAA  500

seq1  GAGAAGACATTTTCCCTTGCCCGGCTTAGGATCTTCCCATTTTTTTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACATTTTCCCTTGCCCGGCTTAGGATCTTCCCATTTTTTTCCCT  550

seq1  TAGATGGTTTTCATAGGAAACTTTTTACAACTAAAATGCTATAATCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTTTTCATAGGAAACTTTTTACAACTAAAATGCTATAATCACTT  600

seq1  TTCAAAGTGTCCCTTTTTCTTTCAGTGACTTCCAATTAGCAGGCTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTGTCCCTTTTTCTTTCAGTGACTTCCAATTAGCAGGCTGAATG  650

seq1  TTAGAGCCATGCAGTTCCTGCTGAGAGAGTATTAAAGCTATTCTCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCATGCAGTTCCTGCTGAGAGAGTATTAAAGCTATTCTCAGAGG  700

seq1  ATCACAGAGGCAGGTCAGCC-ACAATAGCAAGGTAACTTAG-ACTTAG-T  747
      |||||||||||||||||||| |||||||||||||||||||| |||||| |
seq2  ATCACAGAGGCAGGTCAGCCAACAATAGCAAGGTAACTTAGAACTTAGTT  750

seq1  TAAGTAAACTTTTTATTATTA-CACAGCAACCCT-AAATATCTCATAAG-  794
      || |||||||||||||||||| |||||||||||| |||||||||||||| 
seq2  TAGGTAAACTTTTTATTATTACCACAGCAACCCTAAAATATCTCATAAGA  800

seq1  ACAAAG-TCTT--AACCCTCCACCAACCCTGCCTCTTTGGCTGCCTCAAG  841
      |||||| ||||  ||||||||| |||||||||||| || ||||| || ||
seq2  ACAAAGTTCTTTAAACCCTCCA-CAACCCTGCCTCCTT-GCTGCTTC-AG  847

seq1  AAGCAACAGCAAG--AAAAAAGACTCCAATTTCACTACAAAAGTGGCTAT  889
      | |||||||||||  |||||||||||  | |  |||||  |||||   ||
seq2  AGGCAACAGCAAGAAAAAAAAGACTC--AGT--ACTAC--AAGTG--CAT  889

seq1  TTGTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  938
      | ||||| ||| ||||                                  
seq2  TGGTCTC-CTCTTCTC----------------------------------  904

seq1  TCTCTCTCTCTCTCTCTCTCTCTTCCCTCTCTCTCTCTCTCTTGCCTTCT  988
                                                        
seq2  --------------------------------------------------  904

seq1  AGCTCCCACTCTTTTCTTATTCCCTTCCCGCTCTCTCTCCACAGCCTCAT  1038
                                                        
seq2  --------------------------------------------------  904

seq1  GTCAGACCTCCACTTCTCCCTCTCCCTCCCCTTCTCCCCCTCTCATTCTC  1088
                                                        
seq2  --------------------------------------------------  904

seq1  TCCCCCTCTCCCCCTTTCCTCCTCTTCTC  1117
                                   
seq2  -----------------------------  904


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